RNA–Protein interactions for RNA: ENST00000557599.5

PRKCH-227, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-227	ENST00000557599	COL3A1	P02461	1466 aa	Predicted RBP	13.9	□□□□□ -0.18
PRKCH-227	ENST00000557599	SYTL4	Q96C24	671 aa	Predicted RBP	13.89	□□□□□ -0.19
PRKCH-227	ENST00000557599	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
PRKCH-227	ENST00000557599	CCNL1	Q9UK58	526 aa	Predicted RBP	13.89	□□□□□ -0.19
PRKCH-227	ENST00000557599	RUNDC1	Q96C34	613 aa		13.88	□□□□□ -0.19
PRKCH-227	ENST00000557599	ZBED9	Q6R2W3	1325 aa		13.88	□□□□□ -0.19
PRKCH-227	ENST00000557599	KIAA1551	Q9HCM1	1747 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	FCHSD2	O94868	740 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	IL13	P35225	146 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	COL23A1	Q86Y22	540 aa	Predicted RBP	13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	EYA1	Q99502	592 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	TFCP2L1	Q9NZI6	479 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	KIF13B	Q9NQT8	1826 aa		13.87	□□□□□ -0.19
PRKCH-227	ENST00000557599	KDR	P35968	1356 aa		13.86	□□□□□ -0.19
PRKCH-227	ENST00000557599	DCAF8L1	A6NGE4	600 aa		13.86	□□□□□ -0.19
PRKCH-227	ENST00000557599	EIF4A2	Q14240	407 aa	Known RBP	13.86	□□□□□ -0.19
PRKCH-227	ENST00000557599	IGSF1	Q8N6C5	1336 aa		13.86	□□□□□ -0.19
PRKCH-227	ENST00000557599	AMIGO3	Q86WK7	504 aa		13.85	□□□□□ -0.19
PRKCH-227	ENST00000557599	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.85	□□□□□ -0.19
PRKCH-227	ENST00000557599	CCDC146	Q8IYE0	955 aa		13.84	□□□□□ -0.19
PRKCH-227	ENST00000557599	PIGB	Q92521	554 aa		13.84	□□□□□ -0.19
PRKCH-227	ENST00000557599	ADAMTS7	Q9UKP4	1686 aa		13.84	□□□□□ -0.19
PRKCH-227	ENST00000557599	PHKG2	P15735	406 aa		13.83	□□□□□ -0.2
PRKCH-227	ENST00000557599	POLD1	P28340	1107 aa		13.83	□□□□□ -0.2
PRKCH-227	ENST00000557599	NLGN2	Q8NFZ4	835 aa		13.83	□□□□□ -0.2
PRKCH-227	ENST00000557599	C4A	P0C0L4	1744 aa		13.83	□□□□□ -0.2
PRKCH-227	ENST00000557599	KDM6A	O15550	1401 aa	Predicted RBP	13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	TJP1	Q07157	1748 aa		13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	SCN11A	Q9UI33	1791 aa		13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	HMOX1	P09601	288 aa		13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	HMGB2	P26583	209 aa	Known RBP	13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	PRKAR2B	P31323	418 aa		13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	MPRIP	Q6WCQ1	1025 aa		13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	SMARCC1	Q92922	1105 aa	Predicted RBP	13.82	□□□□□ -0.2
PRKCH-227	ENST00000557599	APAF1	O14727	1248 aa		13.81	□□□□□ -0.2
PRKCH-227	ENST00000557599	SULT6B1	Q6IMI4	303 aa		13.81	□□□□□ -0.2
PRKCH-227	ENST00000557599	FLAD1	Q8NFF5	587 aa		13.81	□□□□□ -0.2
PRKCH-227	ENST00000557599	SPG7	Q9UQ90	795 aa		13.81	□□□□□ -0.2
PRKCH-227	ENST00000557599	LMOD3	Q0VAK6	560 aa		13.8	□□□□□ -0.2
PRKCH-227	ENST00000557599	NCBP3	Q53F19	620 aa	Known RBP	13.8	□□□□□ -0.2
PRKCH-227	ENST00000557599	RSPH6A	Q9H0K4	717 aa		13.8	□□□□□ -0.2
PRKCH-227	ENST00000557599	SALL2	Q9Y467	1007 aa	Predicted RBP	13.8	□□□□□ -0.2
PRKCH-227	ENST00000557599	VIRMA	Q69YN4	1812 aa	Known RBP	13.8	□□□□□ -0.2
PRKCH-227	ENST00000557599	BRCA1	P38398	1863 aa	Known RBP	13.79	□□□□□ -0.2
PRKCH-227	ENST00000557599	ITPK1	Q13572	414 aa		13.79	□□□□□ -0.2
PRKCH-227	ENST00000557599	IFNL2	Q8IZJ0	200 aa		13.79	□□□□□ -0.2
PRKCH-227	ENST00000557599	LINC00116	Q8NCU8	138 aa		13.79	□□□□□ -0.2
PRKCH-227	ENST00000557599	MRC1	P22897	1456 aa		13.79	□□□□□ -0.2
PRKCH-227	ENST00000557599	LOC102724428	A0A0B4J2F2	783 aa		13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	YBX3	P16989	372 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	SSFA2	P28290	1259 aa		13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	SIK1	P57059	783 aa		13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	CD2AP	Q9Y5K6	639 aa		13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	ADCY9	O60503	1353 aa		13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	MYH14	Q7Z406	1995 aa	Known RBP	13.78	□□□□□ -0.2
PRKCH-227	ENST00000557599	CALD1	Q05682	793 aa	Known RBP	13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	NEUROD2	Q15784	382 aa		13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	GAS2L2	Q8NHY3	880 aa		13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	SLC4A9	Q96Q91	983 aa		13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	ATG3	Q9NT62	314 aa		13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	ASAP1	Q9ULH1	1129 aa		13.77	□□□□□ -0.21
PRKCH-227	ENST00000557599	CEP350	Q5VT06	3117 aa		13.76	□□□□□ -0.21
PRKCH-227	ENST00000557599	NFE2L2	Q16236	605 aa		13.76	□□□□□ -0.21
PRKCH-227	ENST00000557599	PLEKHF1	Q96S99	279 aa		13.76	□□□□□ -0.21
PRKCH-227	ENST00000557599	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	ERVV-2	B6SEH9	535 aa		13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	TMPO	P42166	694 aa	Known RBP	13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	CCDC27	Q2M243	656 aa		13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	MSL1	Q68DK7	614 aa		13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	TMOD3	Q9NYL9	352 aa		13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	UBR2	Q8IWV8	1755 aa		13.75	□□□□□ -0.21
PRKCH-227	ENST00000557599	RIPK4	P57078	832 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	GOLGA2	Q08379	1002 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	GPR162	Q16538	588 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	AEBP1	Q8IUX7	1158 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	DCAF5	Q96JK2	942 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	AK7	Q96M32	723 aa		13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	RRP7A	Q9Y3A4	280 aa	Known RBP	13.74	□□□□□ -0.21
PRKCH-227	ENST00000557599	SENP3-EIF4A1	A0A087X0R7	540 aa		13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	AMOT	Q4VCS5	1084 aa		13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	SMIM5	Q71RC9	77 aa		13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	RTF1	Q92541	710 aa	Known RBP	13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	PXDNL	A1KZ92	1463 aa		13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	C10orf71	Q711Q0	1435 aa		13.73	□□□□□ -0.21
PRKCH-227	ENST00000557599	CNTNAP4	Q9C0A0	1308 aa		13.72	□□□□□ -0.21
PRKCH-227	ENST00000557599	GRIN3B	O60391	1043 aa		13.72	□□□□□ -0.21
PRKCH-227	ENST00000557599	WDR63	Q8IWG1	891 aa		13.72	□□□□□ -0.21
PRKCH-227	ENST00000557599	SIPA1L3	O60292	1781 aa	Predicted RBP	13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	KCP	Q6ZWJ8	1503 aa		13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599		E9PSI1	815 aa		13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	HSP90AB1	P08238	724 aa	Known RBP	13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	ATP6V1A	P38606	617 aa		13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	RC3H1	Q5TC82	1133 aa	Known RBP	13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	WWC1	Q8IX03	1113 aa		13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	MYH16	Q9H6N6	1097 aa		13.71	□□□□□ -0.21
PRKCH-227	ENST00000557599	ARFGEF1	Q9Y6D6	1849 aa		13.7	□□□□□ -0.22
PRKCH-227	ENST00000557599	MSH5	O43196	834 aa		13.7	□□□□□ -0.22
PRKCH-227	ENST00000557599	C1QTNF8	P60827	252 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms