RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 TMEM57Q8N5G2 664 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 DCAF5Q96JK2 942 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 STK31Q9BXU1 1019 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 KDM2BQ8NHM5 1336 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 PARP4Q9UKK3 1724 aaKnown RBP15.87■□□□□ 0.13
SHMT2-233ENST00000557529 LARP1Q6PKG0 1096 aaKnown RBP15.87■□□□□ 0.13
SHMT2-233ENST00000557529 ABCC4O15439 1325 aa15.86■□□□□ 0.13
SHMT2-233ENST00000557529 KDM3BQ7LBC6 1761 aa15.86■□□□□ 0.13
SHMT2-233ENST00000557529 EIF4A1P60842 406 aaKnown RBP15.86■□□□□ 0.13
SHMT2-233ENST00000557529 ZCRB1Q8TBF4 217 aaKnown RBP15.86■□□□□ 0.13
SHMT2-233ENST00000557529 BTG4Q9NY30 223 aa15.86■□□□□ 0.13
SHMT2-233ENST00000557529 PCDH11XQ9BZA7 1347 aa15.86■□□□□ 0.13
SHMT2-233ENST00000557529 PCDH11YQ9BZA8 1340 aa15.86■□□□□ 0.13
SHMT2-233ENST00000557529 CYP27B1O15528 508 aa15.85■□□□□ 0.13
SHMT2-233ENST00000557529 SLC4A2P04920 1241 aa15.85■□□□□ 0.13
SHMT2-233ENST00000557529 KDM6AO15550 1401 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-233ENST00000557529 SLC52A2Q9HAB3 445 aa15.84■□□□□ 0.13
SHMT2-233ENST00000557529 MRC1P22897 1456 aa15.83■□□□□ 0.12
SHMT2-233ENST00000557529 SCN11AQ9UI33 1791 aa15.83■□□□□ 0.12
SHMT2-233ENST00000557529 VIRMAQ69YN4 1812 aaKnown RBP15.82■□□□□ 0.12
SHMT2-233ENST00000557529 HDGFL1Q5TGJ6 251 aa15.82■□□□□ 0.12
SHMT2-233ENST00000557529 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-233ENST00000557529 SIPA1L3O60292 1781 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-233ENST00000557529 INTS3Q68E01 1043 aaKnown RBP15.81■□□□□ 0.12
SHMT2-233ENST00000557529 ZBTB40Q9NUA8 1239 aa15.81■□□□□ 0.12
SHMT2-233ENST00000557529 RGS12O14924 1447 aa15.81■□□□□ 0.12
SHMT2-233ENST00000557529 HEG1Q9ULI3 1381 aa15.8■□□□□ 0.12
SHMT2-233ENST00000557529 KCNQ3O43525 872 aa15.8■□□□□ 0.12
SHMT2-233ENST00000557529 NKX1-1Q15270 411 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-233ENST00000557529 PCDHB15Q9Y5E8 787 aa15.8■□□□□ 0.12
SHMT2-233ENST00000557529 CABP4P57796 275 aa15.79■□□□□ 0.12
SHMT2-233ENST00000557529 NFATC2IPQ8NCF5 419 aa15.79■□□□□ 0.12
SHMT2-233ENST00000557529 CERKQ8TCT0 537 aa15.79■□□□□ 0.12
SHMT2-233ENST00000557529 ERVV-2B6SEH9 535 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 ZBTB7BO15156 539 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-233ENST00000557529 GIGYF1O75420 1035 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-233ENST00000557529 ADAMTS2O95450 1211 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 IGHDP01880 384 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 FLIIQ13045 1269 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 ZNF790Q6PG37 636 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 TSHZ2Q9NRE2 1034 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 CACNA1FO60840 1977 aa15.78■□□□□ 0.12
SHMT2-233ENST00000557529 CCT4P50991 539 aaKnown RBP15.77■□□□□ 0.12
SHMT2-233ENST00000557529 HDAC1Q13547 482 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-233ENST00000557529 G2E3Q7L622 706 aa15.77■□□□□ 0.12
SHMT2-233ENST00000557529 CDCA7Q9BWT1 371 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-233ENST00000557529 DISP2A7MBM2 1401 aa15.77■□□□□ 0.12
SHMT2-233ENST00000557529 JCADQ9P266 1359 aa15.77■□□□□ 0.11
SHMT2-233ENST00000557529 PLCH1Q4KWH8 1693 aa15.77■□□□□ 0.11
SHMT2-233ENST00000557529 EIF2S2P20042 333 aaKnown RBP15.76■□□□□ 0.11
SHMT2-233ENST00000557529 TTC5Q8N0Z6 440 aa15.76■□□□□ 0.11
SHMT2-233ENST00000557529 NECTIN2Q92692 538 aa15.76■□□□□ 0.11
SHMT2-233ENST00000557529 USP35Q9P2H5 1018 aa15.76■□□□□ 0.11
SHMT2-233ENST00000557529 NUTM2BA6NNL0 878 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 NUTM2EB1AL46 878 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 FKBP5Q13451 457 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 NUTM2AQ8IVF1 878 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 DBF4Q9UBU7 674 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 THRAP3Q9Y2W1 955 aaKnown RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 DDX54Q8TDD1 881 aaKnown RBP15.75■□□□□ 0.11
SHMT2-233ENST00000557529 SLC39A6Q13433 755 aa15.74■□□□□ 0.11
SHMT2-233ENST00000557529 FMNL2Q96PY5 1086 aa15.74■□□□□ 0.11
SHMT2-233ENST00000557529 PXDNLA1KZ92 1463 aa15.73■□□□□ 0.11
SHMT2-233ENST00000557529 NRAPQ86VF7 1730 aa15.73■□□□□ 0.11
SHMT2-233ENST00000557529 SHANK3Q9BYB0 1731 aa15.73■□□□□ 0.11
SHMT2-233ENST00000557529 NWD2Q9ULI1 1742 aa15.73■□□□□ 0.11
SHMT2-233ENST00000557529 CHPF2Q9P2E5 772 aa15.73■□□□□ 0.11
SHMT2-233ENST00000557529 SLIT2O94813 1529 aa15.72■□□□□ 0.11
SHMT2-233ENST00000557529 SPATA31A1Q5TZJ5 1347 aa15.72■□□□□ 0.11
SHMT2-233ENST00000557529 SNRPA1P09661 255 aaKnown RBP15.72■□□□□ 0.11
SHMT2-233ENST00000557529 ZNF496Q96IT1 587 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-233ENST00000557529 HYPKQ9NX55 129 aa15.72■□□□□ 0.11
SHMT2-233ENST00000557529 SPATA31A6Q5VVP1 1343 aa15.71■□□□□ 0.11
SHMT2-233ENST00000557529 F6X3S4 739 aa15.71■□□□□ 0.11
SHMT2-233ENST00000557529 EXOC5O00471 708 aa15.71■□□□□ 0.11
SHMT2-233ENST00000557529 SLC4A10Q6U841 1118 aa15.71■□□□□ 0.11
SHMT2-233ENST00000557529 PHAXQ9H814 394 aaKnown RBP15.7■□□□□ 0.1
SHMT2-233ENST00000557529 DDX21Q9NR30 783 aaKnown RBP eCLIP15.7■□□□□ 0.1
SHMT2-233ENST00000557529 SPATA31A5Q5VU36 1347 aa15.7■□□□□ 0.1
SHMT2-233ENST00000557529 SPATA31A7Q8IWB4 1347 aa15.7■□□□□ 0.1
SHMT2-233ENST00000557529 SMC5Q8IY18 1101 aa15.69■□□□□ 0.1
SHMT2-233ENST00000557529 TNS2Q63HR2 1409 aa15.69■□□□□ 0.1
SHMT2-233ENST00000557529 WNK3Q9BYP7 1800 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 GNAI3P08754 354 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 BARGINQ6ZT62 677 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 UNC5CLQ8IV45 518 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 TMOD3Q9NYL9 352 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 LRP6O75581 1613 aa15.68■□□□□ 0.1
SHMT2-233ENST00000557529 PRAMEF22A3QJZ6 481 aa15.67■□□□□ 0.1
SHMT2-233ENST00000557529 DDX58O95786 925 aaKnown RBP15.67■□□□□ 0.1
SHMT2-233ENST00000557529 RPAP2Q8IXW5 612 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-233ENST00000557529 DNAAF4Q8WXU2 420 aa15.67■□□□□ 0.1
SHMT2-233ENST00000557529 C1orf115Q9H7X2 142 aa15.67■□□□□ 0.1
SHMT2-233ENST00000557529 ERBB4Q15303 1308 aa15.67■□□□□ 0.1
SHMT2-233ENST00000557529 N4BP2Q86UW6 1770 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-233ENST00000557529 GCC1Q96CN9 775 aa15.66■□□□□ 0.1
SHMT2-233ENST00000557529 NGLY1Q96IV0 654 aa15.66■□□□□ 0.1
SHMT2-233ENST00000557529 MEIS3Q99687 375 aa15.66■□□□□ 0.1
SHMT2-233ENST00000557529 SRCIN1Q9C0H9 1055 aa15.66■□□□□ 0.1
SHMT2-233ENST00000557529 PDZRN3Q9UPQ7 1066 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms