RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 WBP1LQ9NX94 342 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 ARFGEF1Q9Y6D6 1849 aa13.71□□□□□ -0.21
NEDD1-211ENST00000557454 ZC3H4Q9UPT8 1303 aaKnown RBP13.71□□□□□ -0.21
NEDD1-211ENST00000557454 DALRD3Q5D0E6 543 aaKnown RBP13.71□□□□□ -0.21
NEDD1-211ENST00000557454 MPRIPQ6WCQ1 1025 aa13.71□□□□□ -0.21
NEDD1-211ENST00000557454 NME9Q86XW9 330 aa13.71□□□□□ -0.21
NEDD1-211ENST00000557454 PIM2Q9P1W9 311 aa13.71□□□□□ -0.21
NEDD1-211ENST00000557454 FAM208AQ9UK61 1670 aaKnown RBP13.71□□□□□ -0.21
NEDD1-211ENST00000557454 VEGFBP49765 207 aa13.7□□□□□ -0.22
NEDD1-211ENST00000557454 TNRC18O15417 2968 aaPredicted RBP13.7□□□□□ -0.22
NEDD1-211ENST00000557454 KDM6AO15550 1401 aaPredicted RBP13.68□□□□□ -0.22
NEDD1-211ENST00000557454 POTECB2RU33 542 aa13.68□□□□□ -0.22
NEDD1-211ENST00000557454 IP6K1Q92551 441 aa13.68□□□□□ -0.22
NEDD1-211ENST00000557454 SMARCC1Q92922 1105 aaPredicted RBP13.68□□□□□ -0.22
NEDD1-211ENST00000557454 CFAP44Q96MT7 982 aa13.68□□□□□ -0.22
NEDD1-211ENST00000557454 EVC2Q86UK5 1308 aa13.67□□□□□ -0.22
NEDD1-211ENST00000557454 TMF1P82094 1093 aa13.67□□□□□ -0.22
NEDD1-211ENST00000557454 C4AP0C0L4 1744 aa13.67□□□□□ -0.22
NEDD1-211ENST00000557454 SBF1O95248 1867 aa13.66□□□□□ -0.22
NEDD1-211ENST00000557454 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
NEDD1-211ENST00000557454 NLGN1Q8N2Q7 840 aa13.66□□□□□ -0.22
NEDD1-211ENST00000557454 LOC102724428A0A0B4J2F2 783 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 POTEIP0CG38 1075 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 POTEJP0CG39 1038 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 LMNB1P20700 586 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 CHRNA5P30532 468 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 SIK1P57059 783 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 ITPK1Q13572 414 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 PARP3Q9Y6F1 533 aa13.65□□□□□ -0.22
NEDD1-211ENST00000557454 SBNO2Q9Y2G9 1366 aa13.64□□□□□ -0.23
NEDD1-211ENST00000557454 USHBP1Q8N6Y0 703 aa13.64□□□□□ -0.23
NEDD1-211ENST00000557454 FOXD4L1Q9NU39 408 aa13.64□□□□□ -0.23
NEDD1-211ENST00000557454 MON2Q7Z3U7 1717 aa13.64□□□□□ -0.23
NEDD1-211ENST00000557454 GYS1P13807 737 aa13.63□□□□□ -0.23
NEDD1-211ENST00000557454 PIGBQ92521 554 aa13.63□□□□□ -0.23
NEDD1-211ENST00000557454 PCDH11XQ9BZA7 1347 aa13.63□□□□□ -0.23
NEDD1-211ENST00000557454 PCDH11YQ9BZA8 1340 aa13.63□□□□□ -0.23
NEDD1-211ENST00000557454 MAP2P11137 1827 aaKnown RBP13.62□□□□□ -0.23
NEDD1-211ENST00000557454 CGNL1Q0VF96 1302 aa13.62□□□□□ -0.23
NEDD1-211ENST00000557454 PASKQ96RG2 1323 aa13.62□□□□□ -0.23
NEDD1-211ENST00000557454 TIAM2Q8IVF5 1701 aa13.61□□□□□ -0.23
NEDD1-211ENST00000557454 HOXC9P31274 260 aa13.61□□□□□ -0.23
NEDD1-211ENST00000557454 TRAPPC3LQ5T215 181 aa13.61□□□□□ -0.23
NEDD1-211ENST00000557454 RAPGEF4Q8WZA2 1011 aa13.61□□□□□ -0.23
NEDD1-211ENST00000557454 CYP27B1O15528 508 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 NBPF6Q5VWK0 638 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 NBPF4Q96M43 638 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
NEDD1-211ENST00000557454 RGPD2P0DJD1 1756 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 CD163L1Q9NR16 1453 aa13.6□□□□□ -0.23
NEDD1-211ENST00000557454 VIRMAQ69YN4 1812 aaKnown RBP13.6□□□□□ -0.23
NEDD1-211ENST00000557454 TMEM88BA6NKF7 163 aa13.59□□□□□ -0.23
NEDD1-211ENST00000557454 TATP17735 454 aaPredicted RBP13.59□□□□□ -0.23
NEDD1-211ENST00000557454 MAP2K1Q02750 393 aaPredicted RBP13.59□□□□□ -0.23
NEDD1-211ENST00000557454 ARHGEF1Q92888 912 aaKnown RBP13.59□□□□□ -0.23
NEDD1-211ENST00000557454 MAP3K19Q56UN5 1328 aa13.59□□□□□ -0.23
NEDD1-211ENST00000557454 DPY19L2Q6NUT2 758 aa13.58□□□□□ -0.24
NEDD1-211ENST00000557454 AMPHP49418 695 aa13.57□□□□□ -0.24
NEDD1-211ENST00000557454 DDR1Q08345 913 aa13.57□□□□□ -0.24
NEDD1-211ENST00000557454 MCOLN1Q9GZU1 580 aa13.57□□□□□ -0.24
NEDD1-211ENST00000557454 ASAP1Q9ULH1 1129 aa13.57□□□□□ -0.24
NEDD1-211ENST00000557454 ITGB4P16144 1822 aa13.57□□□□□ -0.24
NEDD1-211ENST00000557454 RASSF10A6NK89 507 aa13.56□□□□□ -0.24
NEDD1-211ENST00000557454 NFKBIEO00221 500 aa13.56□□□□□ -0.24
NEDD1-211ENST00000557454 SLC4A2P04920 1241 aa13.56□□□□□ -0.24
NEDD1-211ENST00000557454 RFC4P35249 363 aa13.56□□□□□ -0.24
NEDD1-211ENST00000557454 PRPF38BQ5VTL8 546 aaKnown RBP13.56□□□□□ -0.24
NEDD1-211ENST00000557454 WDR33Q9C0J8 1336 aaKnown RBP13.56□□□□□ -0.24
NEDD1-211ENST00000557454 FBLN1P23142 703 aa13.55□□□□□ -0.24
NEDD1-211ENST00000557454 EDC4Q6P2E9 1401 aaKnown RBP13.55□□□□□ -0.24
NEDD1-211ENST00000557454 DEFB115Q30KQ5 88 aa13.54□□□□□ -0.24
NEDD1-211ENST00000557454 TSKSQ9UJT2 592 aa13.54□□□□□ -0.24
NEDD1-211ENST00000557454 FKBP8Q14318 412 aa13.53□□□□□ -0.24
NEDD1-211ENST00000557454 LDHDQ86WU2 507 aa13.53□□□□□ -0.24
NEDD1-211ENST00000557454 TMOD3Q9NYL9 352 aa13.53□□□□□ -0.24
NEDD1-211ENST00000557454 SRP68Q9UHB9 627 aaKnown RBP13.53□□□□□ -0.24
NEDD1-211ENST00000557454 KDRP35968 1356 aa13.53□□□□□ -0.24
NEDD1-211ENST00000557454 DDNO94850 711 aaPredicted RBP13.52□□□□□ -0.25
NEDD1-211ENST00000557454 ITGBL1O95965 494 aaPredicted RBP13.52□□□□□ -0.25
NEDD1-211ENST00000557454 ERFEQ4G0M1 354 aa13.52□□□□□ -0.25
NEDD1-211ENST00000557454 BEGAINQ9BUH8 593 aa13.52□□□□□ -0.25
NEDD1-211ENST00000557454 RTL1A6NKG5 1358 aa13.51□□□□□ -0.25
NEDD1-211ENST00000557454 RAB3GAP2Q9H2M9 1393 aa13.51□□□□□ -0.25
NEDD1-211ENST00000557454 HDGFL2Q7Z4V5 671 aaPredicted RBP13.51□□□□□ -0.25
NEDD1-211ENST00000557454 SLC4A9Q96Q91 983 aa13.51□□□□□ -0.25
NEDD1-211ENST00000557454 ATG3Q9NT62 314 aa13.51□□□□□ -0.25
NEDD1-211ENST00000557454 SMG6Q86US8 1419 aaKnown RBP13.5□□□□□ -0.25
NEDD1-211ENST00000557454 CNTNAP4Q9C0A0 1308 aa13.5□□□□□ -0.25
NEDD1-211ENST00000557454 POLRMTO00411 1230 aaKnown RBP13.5□□□□□ -0.25
NEDD1-211ENST00000557454 RPS6KA4O75676 772 aa13.5□□□□□ -0.25
NEDD1-211ENST00000557454 TMC1Q8TDI8 760 aa13.5□□□□□ -0.25
NEDD1-211ENST00000557454 ABT1Q9ULW3 272 aaKnown RBP13.5□□□□□ -0.25
NEDD1-211ENST00000557454 THSD7BQ9C0I4 1608 aa13.5□□□□□ -0.25
NEDD1-211ENST00000557454 A0A1W2PP64 1363 aa13.49□□□□□ -0.25
NEDD1-211ENST00000557454 SOX10P56693 466 aa13.49□□□□□ -0.25
NEDD1-211ENST00000557454 NKX1-1Q15270 411 aaPredicted RBP13.49□□□□□ -0.25
NEDD1-211ENST00000557454 RC3H1Q5TC82 1133 aaKnown RBP13.49□□□□□ -0.25
NEDD1-211ENST00000557454 TTLL6Q8N841 843 aa13.49□□□□□ -0.25
NEDD1-211ENST00000557454 TAF1DQ9H5J8 278 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms