RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	ZIC2	O95409	532 aa	Predicted RBP	7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	GMPR	P36959	345 aa		7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	QPCT	Q16769	361 aa		7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	TNR	Q92752	1358 aa		7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	MED14	O60244	1454 aa		7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	NPHP4	O75161	1426 aa	Predicted RBP	7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	KIAA1107	Q9UPP5	1409 aa		7.78	□□□□□ -1.16
SCFD1-223	ENST00000557076	MROH2A	A6NES4	1674 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	C4orf48	Q5BLP8	95 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	RSPH6A	Q9H0K4	717 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	LRRC7	Q96NW7	1537 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	EEA1	Q15075	1411 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	MIA2	Q96PC5	1412 aa		7.77	□□□□□ -1.17
SCFD1-223	ENST00000557076	A2M	P01023	1474 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	MYO5C	Q9NQX4	1742 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	CLK2	P49760	499 aa	Known RBP	7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	SH3RF1	Q7Z6J0	888 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	ITPKC	Q96DU7	683 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	C1QTNF2	Q9BXJ5	285 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	MAP4K5	Q9Y4K4	846 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	DNMT1	P26358	1616 aa	Known RBP	7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	KIDINS220	Q9ULH0	1771 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	WASHC2C	Q9Y4E1	1318 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	VWDE	Q8N2E2	1590 aa		7.76	□□□□□ -1.17
SCFD1-223	ENST00000557076	UPP2	O95045	317 aa		7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	UBTF	P17480	764 aa	Known RBP	7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	GRM5	P41594	1212 aa		7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	VEGFB	P49765	207 aa		7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	ZSCAN1	Q8NBB4	408 aa		7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	ZFAND3	Q9H8U3	227 aa		7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	CFDP1	Q9UEE9	299 aa	Predicted RBP	7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	ZNF142	P52746	1687 aa	Predicted RBP	7.75	□□□□□ -1.17
SCFD1-223	ENST00000557076	DHX29	Q7Z478	1369 aa	Known RBP	7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	ABCC1	P33527	1531 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	KIF3B	O15066	747 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	NR3C2	P08235	984 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	SH3BP5L	Q7L8J4	393 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	TRMT44	Q8IYL2	757 aa	Known RBP	7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	SLC24A3	Q9HC58	644 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	SAMD9L	Q8IVG5	1584 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	KIF14	Q15058	1648 aa		7.74	□□□□□ -1.17
SCFD1-223	ENST00000557076	NEURL4	Q96JN8	1562 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	MAN1A2	O60476	641 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	ZNF772	Q68DY9	489 aa	Predicted RBP	7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	VASH1	Q7L8A9	365 aa	Predicted RBP	7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	MEIOB	Q8N635	442 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	MYO3A	Q8NEV4	1616 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	ERBB4	Q15303	1308 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	FAM135A	Q9P2D6	1515 aa		7.73	□□□□□ -1.17
SCFD1-223	ENST00000557076	VSIG8	P0DPA2	414 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	FSHR	P23945	695 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	RTL5	Q5HYW3	569 aa	Predicted RBP	7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	C6orf118	Q5T5N4	469 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	TXNDC2	Q86VQ3	553 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	LINC00528	Q8N1L1	170 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	EMILIN1	Q9Y6C2	1016 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	NLRP1	Q9C000	1473 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	CDC42BPB	Q9Y5S2	1711 aa		7.72	□□□□□ -1.17
SCFD1-223	ENST00000557076	MAGEB6P1	A0A0J9YX57	407 aa		7.71	□□□□□ -1.18
SCFD1-223	ENST00000557076	SOBP	A7XYQ1	873 aa		7.71	□□□□□ -1.18
SCFD1-223	ENST00000557076	BMP2	P12643	396 aa		7.71	□□□□□ -1.18
SCFD1-223	ENST00000557076	LTK	P29376	864 aa		7.71	□□□□□ -1.18
SCFD1-223	ENST00000557076	GPATCH8	Q9UKJ3	1502 aa	Known RBP	7.71	□□□□□ -1.18
SCFD1-223	ENST00000557076	RTEL1-TNFRSF6B	F6WH68	1400 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	PZP	P20742	1482 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	PLEKHH2	Q8IVE3	1493 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	KCNA6	P17658	529 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	LOR	P23490	312 aa	Predicted RBP	7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	RXRB	P28702	533 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	CCDC116	Q8IYX3	515 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	SLAIN2	Q9P270	581 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	DEPDC5	O75140	1603 aa		7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	CLTC	Q00610	1675 aa	Known RBP	7.7	□□□□□ -1.18
SCFD1-223	ENST00000557076	ARHGAP35	Q9NRY4	1499 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	PLXNC1	O60486	1568 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	UGGT1	Q9NYU2	1555 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	TSEN34	Q9BSV6	310 aa	Known RBP	7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	POLR3E	Q9NVU0	708 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	CDV3	Q9UKY7	258 aa	Known RBP	7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	EID1	Q9Y6B2	187 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	JCAD	Q9P266	1359 aa		7.69	□□□□□ -1.18
SCFD1-223	ENST00000557076	ATP7A	Q04656	1500 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	PDXDC2P	Q6P474	469 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	PROSER2	Q86WR7	435 aa	Predicted RBP	7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	TRIM52	Q96A61	297 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	CARD14	Q9BXL6	1004 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	SUPT6H	Q7KZ85	1726 aa	Known RBP	7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	SOS2	Q07890	1332 aa	Predicted RBP	7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	SPATA31A6	Q5VVP1	1343 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	ZNF644	Q9H582	1327 aa	Predicted RBP	7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	KDM5D	Q9BY66	1539 aa		7.68	□□□□□ -1.18
SCFD1-223	ENST00000557076	ITSN2	Q9NZM3	1697 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	ERFE	Q4G0M1	354 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	PGPEP1	Q9NXJ5	209 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	TMEM94	Q12767	1356 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	CCNB3	Q8WWL7	1395 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	CASKIN1	Q8WXD9	1431 aa		7.67	□□□□□ -1.18
SCFD1-223	ENST00000557076	PREX2	Q70Z35	1606 aa		7.67	□□□□□ -1.18

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