RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 TUBGCP6Q96RT7 1819 aa30.51■■■□□ 2.47
TDP1-216ENST00000556867 MAP3K5Q99683 1374 aa30.51■■■□□ 2.47
TDP1-216ENST00000556867 HMGB2P26583 209 aaKnown RBP30.5■■■□□ 2.47
TDP1-216ENST00000556867 LOC102724428A0A0B4J2F2 783 aa30.49■■■□□ 2.47
TDP1-216ENST00000556867 SIK1P57059 783 aa30.49■■■□□ 2.47
TDP1-216ENST00000556867 LGR6Q9HBX8 967 aa30.49■■■□□ 2.47
TDP1-216ENST00000556867 ZNF831Q5JPB2 1677 aa30.49■■■□□ 2.47
TDP1-216ENST00000556867 NFATC2IPQ8NCF5 419 aa30.48■■■□□ 2.47
TDP1-216ENST00000556867 SLC52A2Q9HAB3 445 aa30.48■■■□□ 2.47
TDP1-216ENST00000556867 GNAT3A8MTJ3 354 aa30.46■■■□□ 2.47
TDP1-216ENST00000556867 PDGFDQ9GZP0 370 aaPredicted RBP30.46■■■□□ 2.47
TDP1-216ENST00000556867 C4BP0C0L5 1744 aa30.46■■■□□ 2.47
TDP1-216ENST00000556867 TFCP2L1Q9NZI6 479 aa30.42■■■□□ 2.46
TDP1-216ENST00000556867 PNPLA7Q6ZV29 1317 aa30.41■■■□□ 2.46
TDP1-216ENST00000556867 SIPA1L3O60292 1781 aaPredicted RBP30.41■■■□□ 2.46
TDP1-216ENST00000556867 ATP6V1AP38606 617 aa30.4■■■□□ 2.46
TDP1-216ENST00000556867 ITPK1Q13572 414 aa30.4■■■□□ 2.46
TDP1-216ENST00000556867 IL17REQ8NFR9 667 aa30.4■■■□□ 2.46
TDP1-216ENST00000556867 SPON1Q9HCB6 807 aa30.4■■■□□ 2.46
TDP1-216ENST00000556867 CEMIPQ8WUJ3 1361 aa30.4■■■□□ 2.46
TDP1-216ENST00000556867 CICQ96RK0 1608 aaPredicted RBP30.4■■■□□ 2.46
TDP1-216ENST00000556867 SLC4A9Q96Q91 983 aa30.39■■■□□ 2.46
TDP1-216ENST00000556867 PLEKHF1Q96S99 279 aa30.39■■■□□ 2.46
TDP1-216ENST00000556867 COL5A3P25940 1745 aaPredicted RBP30.39■■■□□ 2.45
TDP1-216ENST00000556867 NEFMP07197 916 aa30.38■■■□□ 2.45
TDP1-216ENST00000556867 LINC00116Q8NCU8 138 aa30.38■■■□□ 2.45
TDP1-216ENST00000556867 RBM42Q9BTD8 480 aaKnown RBP30.38■■■□□ 2.45
TDP1-216ENST00000556867 PNNQ9H307 717 aaKnown RBP30.38■■■□□ 2.45
TDP1-216ENST00000556867 UBR3Q6ZT12 1888 aa30.38■■■□□ 2.45
TDP1-216ENST00000556867 DLG5Q8TDM6 1919 aa30.36■■■□□ 2.45
TDP1-216ENST00000556867 ZBTB7AO95365 584 aa30.36■■■□□ 2.45
TDP1-216ENST00000556867 TEFQ10587 303 aa30.35■■■□□ 2.45
TDP1-216ENST00000556867 AK7Q96M32 723 aa30.35■■■□□ 2.45
TDP1-216ENST00000556867 MTFR1LQ9H019 292 aa30.35■■■□□ 2.45
TDP1-216ENST00000556867 UBR2Q8IWV8 1755 aa30.35■■■□□ 2.45
TDP1-216ENST00000556867 TJP1Q07157 1748 aa30.34■■■□□ 2.45
TDP1-216ENST00000556867 KCPQ6ZWJ8 1503 aa30.34■■■□□ 2.45
TDP1-216ENST00000556867 PTCD1O75127 700 aaKnown RBP30.34■■■□□ 2.45
TDP1-216ENST00000556867 HTATSF1O43719 755 aaKnown RBP30.33■■■□□ 2.45
TDP1-216ENST00000556867 SLC16A10Q8TF71 515 aa30.33■■■□□ 2.45
TDP1-216ENST00000556867 RTF1Q92541 710 aaKnown RBP30.32■■■□□ 2.44
TDP1-216ENST00000556867 COL24A1Q17RW2 1714 aa30.31■■■□□ 2.44
TDP1-216ENST00000556867 MAPK8IP3Q9UPT6 1336 aa30.31■■■□□ 2.44
TDP1-216ENST00000556867 SLC39A6Q13433 755 aa30.31■■■□□ 2.44
TDP1-216ENST00000556867 FLAD1Q8NFF5 587 aa30.31■■■□□ 2.44
TDP1-216ENST00000556867 COL23A1Q86Y22 540 aaPredicted RBP30.3■■■□□ 2.44
TDP1-216ENST00000556867 ATF5Q9Y2D1 282 aaPredicted RBP30.3■■■□□ 2.44
TDP1-216ENST00000556867 PTGER2P43116 358 aa30.29■■■□□ 2.44
TDP1-216ENST00000556867 WDR43Q15061 677 aaKnown RBP eCLIP30.29■■■□□ 2.44
TDP1-216ENST00000556867 NFE2L2Q16236 605 aa30.29■■■□□ 2.44
TDP1-216ENST00000556867 CNTNAP4Q9C0A0 1308 aa30.28■■■□□ 2.44
TDP1-216ENST00000556867 MCM10Q7L590 875 aa30.28■■■□□ 2.44
TDP1-216ENST00000556867 MYH14Q7Z406 1995 aaKnown RBP30.28■■■□□ 2.44
TDP1-216ENST00000556867 SSFA2P28290 1259 aa30.27■■■□□ 2.44
TDP1-216ENST00000556867 RC3H1Q5TC82 1133 aaKnown RBP30.27■■■□□ 2.44
TDP1-216ENST00000556867 AMIGO3Q86WK7 504 aa30.27■■■□□ 2.44
TDP1-216ENST00000556867 GNPATO15228 680 aa30.26■■■□□ 2.43
TDP1-216ENST00000556867 SGIP1Q9BQI5 828 aa30.26■■■□□ 2.43
TDP1-216ENST00000556867 TTC5Q8N0Z6 440 aa30.25■■■□□ 2.43
TDP1-216ENST00000556867 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.24■■■□□ 2.43
TDP1-216ENST00000556867 DCTN1Q14203 1278 aa30.24■■■□□ 2.43
TDP1-216ENST00000556867 ZNF790Q6PG37 636 aa30.24■■■□□ 2.43
TDP1-216ENST00000556867 MSH5O43196 834 aa30.23■■■□□ 2.43
TDP1-216ENST00000556867 ANP32CO43423 234 aa30.23■■■□□ 2.43
TDP1-216ENST00000556867 VSIG10Q8N0Z9 540 aa30.23■■■□□ 2.43
TDP1-216ENST00000556867 PPP1R1BQ9UD71 204 aaPredicted RBP30.23■■■□□ 2.43
TDP1-216ENST00000556867 PHF14O94880 888 aa30.22■■■□□ 2.43
TDP1-216ENST00000556867 ADAMTS8Q9UP79 889 aa30.22■■■□□ 2.43
TDP1-216ENST00000556867 BTBD11A6QL63 1104 aa30.21■■■□□ 2.43
TDP1-216ENST00000556867 DNAJC10Q8IXB1 793 aa30.21■■■□□ 2.43
TDP1-216ENST00000556867 CRKLP46109 303 aaKnown RBP30.2■■■□□ 2.43
TDP1-216ENST00000556867 SMIM5Q71RC9 77 aa30.2■■■□□ 2.43
TDP1-216ENST00000556867 RTCBQ9Y3I0 505 aaKnown RBP30.2■■■□□ 2.43
TDP1-216ENST00000556867 RUNDC1Q96C34 613 aa30.19■■■□□ 2.42
TDP1-216ENST00000556867 ZNF496Q96IT1 587 aaPredicted RBP30.19■■■□□ 2.42
TDP1-216ENST00000556867 HEG1Q9ULI3 1381 aa30.18■■■□□ 2.42
TDP1-216ENST00000556867 RPS6KA4O75676 772 aa30.18■■■□□ 2.42
TDP1-216ENST00000556867 CCDC146Q8IYE0 955 aa30.18■■■□□ 2.42
TDP1-216ENST00000556867 ADRA2BP18089 450 aa30.17■■■□□ 2.42
TDP1-216ENST00000556867 TMPOP42166 694 aaKnown RBP30.17■■■□□ 2.42
TDP1-216ENST00000556867 CYP19A1P11511 503 aaPredicted RBP30.16■■■□□ 2.42
TDP1-216ENST00000556867 TAF7Q15545 349 aaPredicted RBP30.16■■■□□ 2.42
TDP1-216ENST00000556867 FMNL2Q96PY5 1086 aa30.16■■■□□ 2.42
TDP1-216ENST00000556867 C4AP0C0L4 1744 aa30.16■■■□□ 2.42
TDP1-216ENST00000556867 KCNQ3O43525 872 aa30.15■■■□□ 2.42
TDP1-216ENST00000556867 POLD1P28340 1107 aa30.15■■■□□ 2.42
TDP1-216ENST00000556867 RIPK4P57078 832 aa30.15■■■□□ 2.42
TDP1-216ENST00000556867 CCDC184Q52MB2 194 aa30.15■■■□□ 2.42
TDP1-216ENST00000556867 INTS5Q6P9B9 1019 aaKnown RBP30.15■■■□□ 2.42
TDP1-216ENST00000556867 KDM3BQ7LBC6 1761 aa30.14■■■□□ 2.42
TDP1-216ENST00000556867 ARXQ96QS3 562 aa30.14■■■□□ 2.42
TDP1-216ENST00000556867 CCDC87Q9NVE4 849 aa30.14■■■□□ 2.42
TDP1-216ENST00000556867 LMOD3Q0VAK6 560 aa30.13■■■□□ 2.41
TDP1-216ENST00000556867 TRAPPC3LQ5T215 181 aa30.13■■■□□ 2.41
TDP1-216ENST00000556867 MSL1Q68DK7 614 aa30.13■■■□□ 2.41
TDP1-216ENST00000556867 THUMPD2Q9BTF0 503 aaKnown RBP30.13■■■□□ 2.41
TDP1-216ENST00000556867 PNISRQ8TF01 805 aaKnown RBP30.11■■■□□ 2.41
TDP1-216ENST00000556867 ARHGEF1Q92888 912 aaKnown RBP30.11■■■□□ 2.41
TDP1-216ENST00000556867 TEX13AQ9BXU3 409 aaPredicted RBP30.11■■■□□ 2.41
TDP1-216ENST00000556867 RRP7AQ9Y3A4 280 aaKnown RBP30.1■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms