RNA–Protein interactions for RNA: ENST00000556712.5

SNX6-208, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 851 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-208ENST00000556712 U2AF1Q01081 240 aaKnown RBP eCLIP13.91□□□□□ -0.18
SNX6-208ENST00000556712 LGR6Q9HBX8 967 aa13.91□□□□□ -0.18
SNX6-208ENST00000556712 ZNF831Q5JPB2 1677 aa13.91□□□□□ -0.18
SNX6-208ENST00000556712 COL24A1Q17RW2 1714 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 LOC102724428A0A0B4J2F2 783 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 SIK1P57059 783 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 ITPK1Q13572 414 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 PHACTR3Q96KR7 559 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 SPON1Q9HCB6 807 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 TFCP2L1Q9NZI6 479 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 ATF5Q9Y2D1 282 aaPredicted RBP13.9□□□□□ -0.18
SNX6-208ENST00000556712 MAP3K5Q99683 1374 aa13.9□□□□□ -0.18
SNX6-208ENST00000556712 RNMTO43148 476 aaKnown RBP13.89□□□□□ -0.19
SNX6-208ENST00000556712 SMIM5Q71RC9 77 aa13.89□□□□□ -0.19
SNX6-208ENST00000556712 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
SNX6-208ENST00000556712 LINC00116Q8NCU8 138 aa13.89□□□□□ -0.19
SNX6-208ENST00000556712 RBM42Q9BTD8 480 aaKnown RBP13.89□□□□□ -0.19
SNX6-208ENST00000556712 NUDCQ9Y266 331 aa13.89□□□□□ -0.19
SNX6-208ENST00000556712 DLG5Q8TDM6 1919 aa13.89□□□□□ -0.19
SNX6-208ENST00000556712 CICQ96RK0 1608 aaPredicted RBP13.89□□□□□ -0.19
SNX6-208ENST00000556712 UBR2Q8IWV8 1755 aa13.88□□□□□ -0.19
SNX6-208ENST00000556712 ATP6V1AP38606 617 aa13.88□□□□□ -0.19
SNX6-208ENST00000556712 RALBP1Q15311 655 aa13.88□□□□□ -0.19
SNX6-208ENST00000556712 AMIGO3Q86WK7 504 aa13.88□□□□□ -0.19
SNX6-208ENST00000556712 PIAS4Q8N2W9 510 aaPredicted RBP13.88□□□□□ -0.19
SNX6-208ENST00000556712 SLC4A9Q96Q91 983 aa13.88□□□□□ -0.19
SNX6-208ENST00000556712 KCPQ6ZWJ8 1503 aa13.87□□□□□ -0.19
SNX6-208ENST00000556712 PTGER2P43116 358 aa13.87□□□□□ -0.19
SNX6-208ENST00000556712 MTFR1LQ9H019 292 aa13.87□□□□□ -0.19
SNX6-208ENST00000556712 SLC52A2Q9HAB3 445 aa13.87□□□□□ -0.19
SNX6-208ENST00000556712 PPP1R1BQ9UD71 204 aaPredicted RBP13.87□□□□□ -0.19
SNX6-208ENST00000556712 MYH14Q7Z406 1995 aaKnown RBP13.86□□□□□ -0.19
SNX6-208ENST00000556712 PTCD1O75127 700 aaKnown RBP13.86□□□□□ -0.19
SNX6-208ENST00000556712 PHF14O94880 888 aa13.86□□□□□ -0.19
SNX6-208ENST00000556712 COL23A1Q86Y22 540 aaPredicted RBP13.86□□□□□ -0.19
SNX6-208ENST00000556712 GAS2L2Q8NHY3 880 aa13.86□□□□□ -0.19
SNX6-208ENST00000556712 AK7Q96M32 723 aa13.86□□□□□ -0.19
SNX6-208ENST00000556712 C4AP0C0L4 1744 aa13.86□□□□□ -0.19
SNX6-208ENST00000556712 MYBBP1AQ9BQG0 1328 aaKnown RBP13.86□□□□□ -0.19
SNX6-208ENST00000556712 MSH5O43196 834 aa13.85□□□□□ -0.19
SNX6-208ENST00000556712 SLC39A6Q13433 755 aa13.85□□□□□ -0.19
SNX6-208ENST00000556712 GNAT3A8MTJ3 354 aa13.84□□□□□ -0.19
SNX6-208ENST00000556712 MSL1Q68DK7 614 aa13.84□□□□□ -0.19
SNX6-208ENST00000556712 SGIP1Q9BQI5 828 aa13.84□□□□□ -0.19
SNX6-208ENST00000556712 GNPATO15228 680 aa13.83□□□□□ -0.2
SNX6-208ENST00000556712 FCHSD2O94868 740 aa13.83□□□□□ -0.2
SNX6-208ENST00000556712 IL17REQ8NFR9 667 aa13.83□□□□□ -0.2
SNX6-208ENST00000556712 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.82□□□□□ -0.2
SNX6-208ENST00000556712 PRKRIP1Q9H875 184 aaPredicted RBP13.82□□□□□ -0.2
SNX6-208ENST00000556712 CEMIPQ8WUJ3 1361 aa13.82□□□□□ -0.2
SNX6-208ENST00000556712 ZNF316A6NFI3 1004 aaPredicted RBP13.81□□□□□ -0.2
SNX6-208ENST00000556712 DCTN1Q14203 1278 aa13.81□□□□□ -0.2
SNX6-208ENST00000556712 MCM10Q7L590 875 aa13.81□□□□□ -0.2
SNX6-208ENST00000556712 SLC16A10Q8TF71 515 aa13.81□□□□□ -0.2
SNX6-208ENST00000556712 SSFA2P28290 1259 aa13.8□□□□□ -0.2
SNX6-208ENST00000556712 TEFQ10587 303 aa13.8□□□□□ -0.2
SNX6-208ENST00000556712 DNAJC10Q8IXB1 793 aa13.8□□□□□ -0.2
SNX6-208ENST00000556712 PLEKHF1Q96S99 279 aa13.8□□□□□ -0.2
SNX6-208ENST00000556712 CNTNAP4Q9C0A0 1308 aa13.8□□□□□ -0.2
SNX6-208ENST00000556712 ARXQ96QS3 562 aa13.79□□□□□ -0.2
SNX6-208ENST00000556712 FHDC1Q9C0D6 1143 aaPredicted RBP13.79□□□□□ -0.2
SNX6-208ENST00000556712 CRKLP46109 303 aaKnown RBP13.78□□□□□ -0.2
SNX6-208ENST00000556712 KLHL34Q8N239 644 aa13.78□□□□□ -0.2
SNX6-208ENST00000556712 FLAD1Q8NFF5 587 aa13.78□□□□□ -0.2
SNX6-208ENST00000556712 KDM3BQ7LBC6 1761 aa13.78□□□□□ -0.2
SNX6-208ENST00000556712 KCNQ3O43525 872 aa13.77□□□□□ -0.21
SNX6-208ENST00000556712 NEFMP07197 916 aa13.77□□□□□ -0.21
SNX6-208ENST00000556712 HMGB2P26583 209 aaKnown RBP13.77□□□□□ -0.21
SNX6-208ENST00000556712 POLD1P28340 1107 aa13.77□□□□□ -0.21
SNX6-208ENST00000556712 TTC5Q8N0Z6 440 aa13.77□□□□□ -0.21
SNX6-208ENST00000556712 RTF1Q92541 710 aaKnown RBP13.77□□□□□ -0.21
SNX6-208ENST00000556712 MAPK8IP3Q9UPT6 1336 aa13.77□□□□□ -0.21
SNX6-208ENST00000556712 RTCBQ9Y3I0 505 aaKnown RBP13.77□□□□□ -0.21
SNX6-208ENST00000556712 NFE2L2Q16236 605 aa13.76□□□□□ -0.21
SNX6-208ENST00000556712 ZNF790Q6PG37 636 aa13.76□□□□□ -0.21
SNX6-208ENST00000556712 CCDC146Q8IYE0 955 aa13.76□□□□□ -0.21
SNX6-208ENST00000556712 ZNF496Q96IT1 587 aaPredicted RBP13.76□□□□□ -0.21
SNX6-208ENST00000556712 HEG1Q9ULI3 1381 aa13.75□□□□□ -0.21
SNX6-208ENST00000556712 BTBD11A6QL63 1104 aa13.75□□□□□ -0.21
SNX6-208ENST00000556712 RC3H1Q5TC82 1133 aaKnown RBP13.75□□□□□ -0.21
SNX6-208ENST00000556712 INTS5Q6P9B9 1019 aaKnown RBP13.75□□□□□ -0.21
SNX6-208ENST00000556712 THUMPD2Q9BTF0 503 aaKnown RBP13.75□□□□□ -0.21
SNX6-208ENST00000556712 LAMB4A4D0S4 1761 aa13.75□□□□□ -0.21
SNX6-208ENST00000556712 RPS6KA4O75676 772 aa13.74□□□□□ -0.21
SNX6-208ENST00000556712 CYP19A1P11511 503 aaPredicted RBP13.74□□□□□ -0.21
SNX6-208ENST00000556712 WDR43Q15061 677 aaKnown RBP eCLIP13.74□□□□□ -0.21
SNX6-208ENST00000556712 TRAPPC3LQ5T215 181 aa13.74□□□□□ -0.21
SNX6-208ENST00000556712 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
SNX6-208ENST00000556712 SYT17Q9BSW7 474 aa13.74□□□□□ -0.21
SNX6-208ENST00000556712 CCDC87Q9NVE4 849 aa13.74□□□□□ -0.21
SNX6-208ENST00000556712 ZBTB1Q9Y2K1 713 aa13.74□□□□□ -0.21
SNX6-208ENST00000556712 SRP68Q9UHB9 627 aaKnown RBP13.73□□□□□ -0.21
SNX6-208ENST00000556712 RRP7AQ9Y3A4 280 aaKnown RBP13.73□□□□□ -0.21
SNX6-208ENST00000556712 SCN7AQ01118 1682 aa13.72□□□□□ -0.21
SNX6-208ENST00000556712 SOS1Q07889 1333 aaPredicted RBP13.72□□□□□ -0.21
SNX6-208ENST00000556712 HTATSF1O43719 755 aaKnown RBP13.72□□□□□ -0.21
SNX6-208ENST00000556712 CCDC184Q52MB2 194 aa13.72□□□□□ -0.21
SNX6-208ENST00000556712 NLGN2Q8NFZ4 835 aa13.72□□□□□ -0.21
SNX6-208ENST00000556712 PNNQ9H307 717 aaKnown RBP13.72□□□□□ -0.21
SNX6-208ENST00000556712 MIS18AQ9NYP9 233 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms