RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 BMP2KLQ5H9B9 411 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 MPRIPQ6WCQ1 1025 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 C22orf23Q9BZE7 217 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 APBB1O00213 710 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 ATF3P18847 181 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 RTL5Q5HYW3 569 aaPredicted RBP12.66□□□□□ -0.38
TMEM260-211ENST00000556648 BABAM1Q9NWV8 329 aa12.66□□□□□ -0.38
TMEM260-211ENST00000556648 XIRP1Q702N8 1843 aaKnown RBP12.65□□□□□ -0.38
TMEM260-211ENST00000556648 GSPT1P15170 499 aaKnown RBP12.65□□□□□ -0.38
TMEM260-211ENST00000556648 CCT4P50991 539 aaKnown RBP12.65□□□□□ -0.38
TMEM260-211ENST00000556648 HDGFL1Q5TGJ6 251 aa12.65□□□□□ -0.38
TMEM260-211ENST00000556648 PLEKHM2Q8IWE5 1019 aa12.65□□□□□ -0.38
TMEM260-211ENST00000556648 PHAXQ9H814 394 aaKnown RBP12.65□□□□□ -0.38
TMEM260-211ENST00000556648 EIF4A1P60842 406 aaKnown RBP12.64□□□□□ -0.39
TMEM260-211ENST00000556648 PLEKHO1Q53GL0 409 aaPredicted RBP12.64□□□□□ -0.39
TMEM260-211ENST00000556648 AKAP4Q5JQC9 854 aa12.64□□□□□ -0.39
TMEM260-211ENST00000556648 RPAP2Q8IXW5 612 aaPredicted RBP12.64□□□□□ -0.39
TMEM260-211ENST00000556648 TBC1D2Q9BYX2 928 aa12.64□□□□□ -0.39
TMEM260-211ENST00000556648 RNMTO43148 476 aaKnown RBP12.64□□□□□ -0.39
TMEM260-211ENST00000556648 CABLES1Q8TDN4 633 aa12.64□□□□□ -0.39
TMEM260-211ENST00000556648 COL18A1P39060 1754 aa12.64□□□□□ -0.39
TMEM260-211ENST00000556648 CRYBG1Q9Y4K1 1723 aa12.64□□□□□ -0.39
TMEM260-211ENST00000556648 CACNA1FO60840 1977 aa12.63□□□□□ -0.39
TMEM260-211ENST00000556648 EIF2S2P20042 333 aaKnown RBP12.63□□□□□ -0.39
TMEM260-211ENST00000556648 DEKP35659 375 aaKnown RBP12.63□□□□□ -0.39
TMEM260-211ENST00000556648 DCCP43146 1447 aa12.63□□□□□ -0.39
TMEM260-211ENST00000556648 TBC1D9Q6ZT07 1266 aa12.63□□□□□ -0.39
TMEM260-211ENST00000556648 SIPA1L3O60292 1781 aaPredicted RBP12.63□□□□□ -0.39
TMEM260-211ENST00000556648 ERBB3P21860 1342 aa12.63□□□□□ -0.39
TMEM260-211ENST00000556648 ANXA1P04083 346 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 NFKBIBQ15653 356 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 SOS1Q07889 1333 aaPredicted RBP12.62□□□□□ -0.39
TMEM260-211ENST00000556648 BTBD11A6QL63 1104 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 TEFQ10587 303 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 BECN1Q14457 450 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 CHPF2Q9P2E5 772 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 PXDNLA1KZ92 1463 aa12.62□□□□□ -0.39
TMEM260-211ENST00000556648 AMOTQ4VCS5 1084 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 C1orf141Q5JVX7 400 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 TTC22Q5TAA0 569 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 SLKQ9H2G2 1235 aaPredicted RBP12.61□□□□□ -0.39
TMEM260-211ENST00000556648 ADAMTS7Q9UKP4 1686 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 TNS3Q68CZ2 1445 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 PRAMEF22A3QJZ6 481 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 GNAI2P04899 355 aa12.61□□□□□ -0.39
TMEM260-211ENST00000556648 MEGF6O75095 1541 aa12.6□□□□□ -0.39
TMEM260-211ENST00000556648 PNMA6EA0A0J9YXQ4 647 aa12.6□□□□□ -0.39
TMEM260-211ENST00000556648 CHRNA2Q15822 529 aa12.6□□□□□ -0.39
TMEM260-211ENST00000556648 EXOC6BQ9Y2D4 811 aa12.6□□□□□ -0.39
TMEM260-211ENST00000556648 SPRYD3Q8NCJ5 442 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 LRRFIP2Q9Y608 721 aaKnown RBP12.59□□□□□ -0.39
TMEM260-211ENST00000556648 STRCQ7RTU9 1775 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 OVOS2A0A0G2JMS6 1433 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 RBM25P49756 843 aaKnown RBP12.59□□□□□ -0.39
TMEM260-211ENST00000556648 USP44Q9H0E7 712 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 NLRP2Q9NX02 1062 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 NCOA3Q9Y6Q9 1424 aa12.59□□□□□ -0.39
TMEM260-211ENST00000556648 CDC45O75419 566 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 PROSER3Q2NL68 480 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 CADPS2Q86UW7 1296 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 ANTXR1Q9H6X2 564 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 KDM6AO15550 1401 aaPredicted RBP12.58□□□□□ -0.4
TMEM260-211ENST00000556648 C5P01031 1676 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 ADCY9O60503 1353 aa12.58□□□□□ -0.4
TMEM260-211ENST00000556648 HMMRO75330 724 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
TMEM260-211ENST00000556648 GNAI3P08754 354 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 NPHP3Q7Z494 1330 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 SCN11AQ9UI33 1791 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 HOXB7P09629 217 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 TSHZ3Q63HK5 1081 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 KIF2CQ99661 725 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 LMTK3Q96Q04 1460 aa12.57□□□□□ -0.4
TMEM260-211ENST00000556648 ATP8B2P98198 1209 aa12.56□□□□□ -0.4
TMEM260-211ENST00000556648 USP35Q9P2H5 1018 aa12.56□□□□□ -0.4
TMEM260-211ENST00000556648 SPATA31A3Q5VYP0 1347 aa12.56□□□□□ -0.4
TMEM260-211ENST00000556648 TUBGCP6Q96RT7 1819 aa12.56□□□□□ -0.4
TMEM260-211ENST00000556648 HEG1Q9ULI3 1381 aa12.56□□□□□ -0.4
TMEM260-211ENST00000556648 GIGYF1O75420 1035 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-211ENST00000556648 SDSP20132 328 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 PI4KAP2A4QPH2 592 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 UBTFL1P0CB47 393 aaPredicted RBP12.55□□□□□ -0.4
TMEM260-211ENST00000556648 CSB-PGBD3P0DP91 1061 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 SLC39A6Q13433 755 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 BEND3Q5T5X7 828 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 BRINP3Q76B58 766 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 PI4KAP1Q8N8J0 262 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 RAPGEF4Q8WZA2 1011 aa12.55□□□□□ -0.4
TMEM260-211ENST00000556648 DNAAF4Q8WXU2 420 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 SRCIN1Q9C0H9 1055 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 SALL3Q9BXA9 1300 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 IBTKQ9P2D0 1353 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-211ENST00000556648 PKD1L3Q7Z443 1732 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 CD2BP2O95400 341 aaKnown RBP12.54□□□□□ -0.4
TMEM260-211ENST00000556648 NBPF7P0C2Y1 421 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-211ENST00000556648 PHKG2P15735 406 aa12.54□□□□□ -0.4
TMEM260-211ENST00000556648 TATP17735 454 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-211ENST00000556648 RBM42Q9BTD8 480 aaKnown RBP12.54□□□□□ -0.4
TMEM260-211ENST00000556648 ZNF335Q9H4Z2 1342 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms