RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SLC16A10Q8TF71 515 aa14.26□□□□□ -0.13
SCFD1-220ENST00000556486 PHF12Q96QT6 1004 aa14.26□□□□□ -0.13
SCFD1-220ENST00000556486 SIN3AQ96ST3 1273 aa14.26□□□□□ -0.13
SCFD1-220ENST00000556486 RGPD2P0DJD1 1756 aa14.25□□□□□ -0.13
SCFD1-220ENST00000556486 PRIM1P49642 420 aaKnown RBP14.25□□□□□ -0.13
SCFD1-220ENST00000556486 SLC27A3Q5K4L6 730 aa14.24□□□□□ -0.13
SCFD1-220ENST00000556486 GPBP1L1Q9HC44 474 aaPredicted RBP14.24□□□□□ -0.13
SCFD1-220ENST00000556486 GRIN3BO60391 1043 aa14.23□□□□□ -0.13
SCFD1-220ENST00000556486 COL23A1Q86Y22 540 aaPredicted RBP14.23□□□□□ -0.13
SCFD1-220ENST00000556486 CCNL1Q9UK58 526 aaPredicted RBP14.23□□□□□ -0.13
SCFD1-220ENST00000556486 USP54Q70EL1 1684 aa14.23□□□□□ -0.13
SCFD1-220ENST00000556486 NSD2O96028 1365 aa14.22□□□□□ -0.13
SCFD1-220ENST00000556486 USP31Q70CQ4 1352 aa14.22□□□□□ -0.13
SCFD1-220ENST00000556486 CD163L1Q9NR16 1453 aa14.21□□□□□ -0.13
SCFD1-220ENST00000556486 TMC1Q8TDI8 760 aa14.21□□□□□ -0.13
SCFD1-220ENST00000556486 C5P01031 1676 aa14.2□□□□□ -0.14
SCFD1-220ENST00000556486 HSPA6P17066 643 aa14.2□□□□□ -0.14
SCFD1-220ENST00000556486 ANKRD36BQ8N2N9 1353 aa14.2□□□□□ -0.14
SCFD1-220ENST00000556486 FBLN1P23142 703 aa14.19□□□□□ -0.14
SCFD1-220ENST00000556486 NEUROD1Q13562 356 aa14.19□□□□□ -0.14
SCFD1-220ENST00000556486 SMIM5Q71RC9 77 aa14.19□□□□□ -0.14
SCFD1-220ENST00000556486 PUS7Q96PZ0 661 aaKnown RBP14.19□□□□□ -0.14
SCFD1-220ENST00000556486 FAM208AQ9UK61 1670 aaKnown RBP14.19□□□□□ -0.14
SCFD1-220ENST00000556486 MEGF6O75095 1541 aa14.18□□□□□ -0.14
SCFD1-220ENST00000556486 GALR2O43603 387 aaPredicted RBP14.17□□□□□ -0.14
SCFD1-220ENST00000556486 USHBP1Q8N6Y0 703 aa14.17□□□□□ -0.14
SCFD1-220ENST00000556486 SLC12A5Q9H2X9 1139 aa14.17□□□□□ -0.14
SCFD1-220ENST00000556486 ADCY9O60503 1353 aa14.17□□□□□ -0.14
SCFD1-220ENST00000556486 TAF1LQ8IZX4 1826 aa14.16□□□□□ -0.14
SCFD1-220ENST00000556486 USP47Q96K76 1375 aa14.16□□□□□ -0.14
SCFD1-220ENST00000556486 PYGBP11216 843 aa14.15□□□□□ -0.14
SCFD1-220ENST00000556486 IP6K1Q92551 441 aa14.15□□□□□ -0.14
SCFD1-220ENST00000556486 CARD11Q9BXL7 1154 aa14.15□□□□□ -0.14
SCFD1-220ENST00000556486 EDC4Q6P2E9 1401 aaKnown RBP14.15□□□□□ -0.14
SCFD1-220ENST00000556486 A0A1W2PP64 1363 aa14.14□□□□□ -0.15
SCFD1-220ENST00000556486 PHF14O94880 888 aa14.14□□□□□ -0.15
SCFD1-220ENST00000556486 HDGFL2Q7Z4V5 671 aaPredicted RBP14.14□□□□□ -0.15
SCFD1-220ENST00000556486 AMIGO3Q86WK7 504 aa14.14□□□□□ -0.15
SCFD1-220ENST00000556486 ZCRB1Q8TBF4 217 aaKnown RBP14.14□□□□□ -0.15
SCFD1-220ENST00000556486 IGSF1Q8N6C5 1336 aa14.14□□□□□ -0.15
SCFD1-220ENST00000556486 TOGARAM1Q9Y4F4 1720 aa14.13□□□□□ -0.15
SCFD1-220ENST00000556486 KIF12Q96FN5 646 aa14.13□□□□□ -0.15
SCFD1-220ENST00000556486 CD2APQ9Y5K6 639 aa14.13□□□□□ -0.15
SCFD1-220ENST00000556486 HOXC9P31274 260 aa14.12□□□□□ -0.15
SCFD1-220ENST00000556486 MAP3K19Q56UN5 1328 aa14.12□□□□□ -0.15
SCFD1-220ENST00000556486 TONSLQ96HA7 1378 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 KIF3CO14782 793 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 C4BP0C0L5 1744 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 POTEIP0CG38 1075 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 AMPHP49418 695 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 WDR70Q9NW82 654 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 TERF2IPQ9NYB0 399 aa14.11□□□□□ -0.15
SCFD1-220ENST00000556486 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.1□□□□□ -0.15
SCFD1-220ENST00000556486 KCNV2Q8TDN2 545 aa14.1□□□□□ -0.15
SCFD1-220ENST00000556486 TESK2Q96S53 571 aa14.1□□□□□ -0.15
SCFD1-220ENST00000556486 UBR3Q6ZT12 1888 aa14.1□□□□□ -0.15
SCFD1-220ENST00000556486 PALLDQ8WX93 1383 aa14.09□□□□□ -0.15
SCFD1-220ENST00000556486 RRS1Q15050 365 aaKnown RBP14.09□□□□□ -0.15
SCFD1-220ENST00000556486 NBPF6Q5VWK0 638 aa14.09□□□□□ -0.15
SCFD1-220ENST00000556486 MPRIPQ6WCQ1 1025 aa14.09□□□□□ -0.15
SCFD1-220ENST00000556486 NBPF4Q96M43 638 aa14.09□□□□□ -0.15
SCFD1-220ENST00000556486 N4BP2Q86UW6 1770 aaPredicted RBP14.09□□□□□ -0.15
SCFD1-220ENST00000556486 ITGB4P16144 1822 aa14.08□□□□□ -0.15
SCFD1-220ENST00000556486 HTRA3P83110 453 aa14.08□□□□□ -0.16
SCFD1-220ENST00000556486 MS4A3Q96HJ5 214 aa14.08□□□□□ -0.16
SCFD1-220ENST00000556486 AK7Q96M32 723 aa14.08□□□□□ -0.16
SCFD1-220ENST00000556486 COG3Q96JB2 828 aa14.07□□□□□ -0.16
SCFD1-220ENST00000556486 MAP3K13O43283 966 aa14.06□□□□□ -0.16
SCFD1-220ENST00000556486 WDR90Q96KV7 1748 aa14.05□□□□□ -0.16
SCFD1-220ENST00000556486 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.05□□□□□ -0.16
SCFD1-220ENST00000556486 APLP1P51693 650 aa14.05□□□□□ -0.16
SCFD1-220ENST00000556486 RAPGEF4Q8WZA2 1011 aa14.05□□□□□ -0.16
SCFD1-220ENST00000556486 DCBLD2Q96PD2 775 aa14.05□□□□□ -0.16
SCFD1-220ENST00000556486 DNAJC5GQ8N7S2 189 aa14.04□□□□□ -0.16
SCFD1-220ENST00000556486 FLAD1Q8NFF5 587 aa14.04□□□□□ -0.16
SCFD1-220ENST00000556486 NMRK2Q9NPI5 230 aa14.04□□□□□ -0.16
SCFD1-220ENST00000556486 KIAA1551Q9HCM1 1747 aa14.04□□□□□ -0.16
SCFD1-220ENST00000556486 ST20-MTHFSA0A0A6YYL1 179 aa14.03□□□□□ -0.16
SCFD1-220ENST00000556486 TATP17735 454 aaPredicted RBP14.03□□□□□ -0.16
SCFD1-220ENST00000556486 COL13A1Q5TAT6 717 aaPredicted RBP14.03□□□□□ -0.16
SCFD1-220ENST00000556486 LINC00116Q8NCU8 138 aa14.03□□□□□ -0.16
SCFD1-220ENST00000556486 CICQ96RK0 1608 aaPredicted RBP14.02□□□□□ -0.16
SCFD1-220ENST00000556486 PCDH11XQ9BZA7 1347 aa14.02□□□□□ -0.17
SCFD1-220ENST00000556486 PCDH11YQ9BZA8 1340 aa14.02□□□□□ -0.17
SCFD1-220ENST00000556486 CYP27B1O15528 508 aa14.02□□□□□ -0.17
SCFD1-220ENST00000556486 GGNBP2Q9H3C7 697 aa14.02□□□□□ -0.17
SCFD1-220ENST00000556486 BCS1LQ9Y276 419 aa14.01□□□□□ -0.17
SCFD1-220ENST00000556486 MAP2P11137 1827 aaKnown RBP14.01□□□□□ -0.17
SCFD1-220ENST00000556486 PXDNLA1KZ92 1463 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 SMG6Q86US8 1419 aaKnown RBP14□□□□□ -0.17
SCFD1-220ENST00000556486 RTL1A6NKG5 1358 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 PCNTO95613 3336 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 A0A0G2JLW4 131 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 GNPATO15228 680 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 TOMM70O94826 608 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 HSP90AB2PQ58FF8 381 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 ARHGAP27Q6ZUM4 889 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 PIGBQ92521 554 aa14□□□□□ -0.17
SCFD1-220ENST00000556486 MMP10P09238 476 aa13.99□□□□□ -0.17
SCFD1-220ENST00000556486 ITPK1Q13572 414 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms