RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 GNAI1P63096 354 aa13.31□□□□□ -0.28
SYNE2-215ENST00000554997 GOLGA2Q08379 1002 aa13.31□□□□□ -0.28
SYNE2-215ENST00000554997 SYTL4Q96C24 671 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-215ENST00000554997 IFT57Q9NWB7 429 aa13.31□□□□□ -0.28
SYNE2-215ENST00000554997 ZBED9Q6R2W3 1325 aa13.31□□□□□ -0.28
SYNE2-215ENST00000554997 EP400Q96L91 3159 aa13.3□□□□□ -0.28
SYNE2-215ENST00000554997 SHANK3Q9BYB0 1731 aa13.3□□□□□ -0.28
SYNE2-215ENST00000554997 TRIM37O94972 964 aa13.29□□□□□ -0.28
SYNE2-215ENST00000554997 SLFN5Q08AF3 891 aa13.29□□□□□ -0.28
SYNE2-215ENST00000554997 PTF1AQ7RTS3 328 aa13.29□□□□□ -0.28
SYNE2-215ENST00000554997 YTHDC1Q96MU7 727 aaKnown RBP13.29□□□□□ -0.28
SYNE2-215ENST00000554997 MIS18AQ9NYP9 233 aa13.29□□□□□ -0.28
SYNE2-215ENST00000554997 LAS1LQ9Y4W2 734 aaKnown RBP13.29□□□□□ -0.28
SYNE2-215ENST00000554997 E9PSI1 815 aa13.28□□□□□ -0.28
SYNE2-215ENST00000554997 ZNF790Q6PG37 636 aa13.28□□□□□ -0.28
SYNE2-215ENST00000554997 TRMT2AQ8IZ69 625 aaKnown RBP13.28□□□□□ -0.28
SYNE2-215ENST00000554997 SPINK5Q9NQ38 1064 aaPredicted RBP13.28□□□□□ -0.28
SYNE2-215ENST00000554997 ATG3Q9NT62 314 aa13.28□□□□□ -0.28
SYNE2-215ENST00000554997 ADAMTS7Q9UKP4 1686 aa13.28□□□□□ -0.28
SYNE2-215ENST00000554997 SLC39A6Q13433 755 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 CCDC125Q86Z20 511 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 SMARCC1Q92922 1105 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-215ENST00000554997 CDCA7LQ96GN5 454 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 MYH16Q9H6N6 1097 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 MBIPQ9NS73 344 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 TSPYL4Q9UJ04 414 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 ASAP1Q9ULH1 1129 aa13.27□□□□□ -0.29
SYNE2-215ENST00000554997 TTC5Q8N0Z6 440 aa13.26□□□□□ -0.29
SYNE2-215ENST00000554997 MRC1P22897 1456 aa13.25□□□□□ -0.29
SYNE2-215ENST00000554997 PLSCR1O15162 318 aa13.25□□□□□ -0.29
SYNE2-215ENST00000554997 KCNQ3O43525 872 aa13.25□□□□□ -0.29
SYNE2-215ENST00000554997 DLG5Q8TDM6 1919 aa13.25□□□□□ -0.29
SYNE2-215ENST00000554997 APBA3O96018 575 aa13.24□□□□□ -0.29
SYNE2-215ENST00000554997 EIF4A1P60842 406 aaKnown RBP13.24□□□□□ -0.29
SYNE2-215ENST00000554997 SCN11AQ9UI33 1791 aa13.23□□□□□ -0.29
SYNE2-215ENST00000554997 VSIG10Q8N0Z9 540 aa13.23□□□□□ -0.29
SYNE2-215ENST00000554997 TSR2Q969E8 191 aaKnown RBP13.23□□□□□ -0.29
SYNE2-215ENST00000554997 ZNF496Q96IT1 587 aaPredicted RBP13.23□□□□□ -0.29
SYNE2-215ENST00000554997 FMNL2Q96PY5 1086 aa13.23□□□□□ -0.29
SYNE2-215ENST00000554997 FANCIQ9NVI1 1328 aa13.22□□□□□ -0.29
SYNE2-215ENST00000554997 PTCD1O75127 700 aaKnown RBP13.22□□□□□ -0.29
SYNE2-215ENST00000554997 SF3B2Q13435 895 aaKnown RBP13.22□□□□□ -0.29
SYNE2-215ENST00000554997 DUSP27Q5VZP5 1158 aa13.22□□□□□ -0.29
SYNE2-215ENST00000554997 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
SYNE2-215ENST00000554997 HEG1Q9ULI3 1381 aa13.21□□□□□ -0.29
SYNE2-215ENST00000554997 GIGYF1O75420 1035 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-215ENST00000554997 SNRPA1P09661 255 aaKnown RBP13.21□□□□□ -0.29
SYNE2-215ENST00000554997 UPF1Q92900 1129 aaKnown RBP eCLIP13.21□□□□□ -0.29
SYNE2-215ENST00000554997 TEX13AQ9BXU3 409 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-215ENST00000554997 TOGARAM1Q9Y4F4 1720 aa13.21□□□□□ -0.3
SYNE2-215ENST00000554997 PALLDQ8WX93 1383 aa13.2□□□□□ -0.3
SYNE2-215ENST00000554997 LOC102724428A0A0B4J2F2 783 aa13.2□□□□□ -0.3
SYNE2-215ENST00000554997 HMGB2P26583 209 aaKnown RBP13.2□□□□□ -0.3
SYNE2-215ENST00000554997 SIK1P57059 783 aa13.2□□□□□ -0.3
SYNE2-215ENST00000554997 EXOSC9Q06265 439 aaKnown RBP13.2□□□□□ -0.3
SYNE2-215ENST00000554997 PROM2Q8N271 834 aa13.2□□□□□ -0.3
SYNE2-215ENST00000554997 C8orf58Q8NAV2 365 aa13.2□□□□□ -0.3
SYNE2-215ENST00000554997 DOT1LQ8TEK3 1739 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 SOS1Q07889 1333 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-215ENST00000554997 VAMP4O75379 141 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 HOXB7P09629 217 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 SLC27A3Q5K4L6 730 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 SLC4A9Q96Q91 983 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 CAMKK2Q96RR4 588 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 CHMP4AQ9BY43 222 aa13.19□□□□□ -0.3
SYNE2-215ENST00000554997 NHSQ6T4R5 1651 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 ELL2O00472 640 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-215ENST00000554997 BAG6P46379 1132 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 KRT24Q2M2I5 525 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 TSPYL6Q8N831 410 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 USP16Q9Y5T5 823 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 ITGB4P16144 1822 aa13.18□□□□□ -0.3
SYNE2-215ENST00000554997 SIPA1L3O60292 1781 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-215ENST00000554997 STARD3NLO95772 234 aa13.17□□□□□ -0.3
SYNE2-215ENST00000554997 CT47B1P0C2W7 299 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-215ENST00000554997 TXNRD1Q16881 649 aa13.17□□□□□ -0.3
SYNE2-215ENST00000554997 TWISTNBQ3B726 338 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-215ENST00000554997 CCNL1Q9UK58 526 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-215ENST00000554997 SBF2Q86WG5 1849 aa13.17□□□□□ -0.3
SYNE2-215ENST00000554997 PRAMEF22A3QJZ6 481 aa13.16□□□□□ -0.3
SYNE2-215ENST00000554997 EN1Q05925 392 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-215ENST00000554997 ITPK1Q13572 414 aa13.16□□□□□ -0.3
SYNE2-215ENST00000554997 DNAJC10Q8IXB1 793 aa13.16□□□□□ -0.3
SYNE2-215ENST00000554997 LRRC4BQ9NT99 713 aa13.16□□□□□ -0.3
SYNE2-215ENST00000554997 KCPQ6ZWJ8 1503 aa13.15□□□□□ -0.3
SYNE2-215ENST00000554997 CYP19A1P11511 503 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-215ENST00000554997 EZH2Q15910 746 aaKnown RBP13.15□□□□□ -0.3
SYNE2-215ENST00000554997 ZNF428Q96B54 188 aa13.15□□□□□ -0.3
SYNE2-215ENST00000554997 TNS1Q9HBL0 1735 aaKnown RBP13.15□□□□□ -0.3
SYNE2-215ENST00000554997 EIF2S2P20042 333 aaKnown RBP13.14□□□□□ -0.31
SYNE2-215ENST00000554997 KCNQ4P56696 695 aa13.14□□□□□ -0.31
SYNE2-215ENST00000554997 RC3H1Q5TC82 1133 aaKnown RBP13.14□□□□□ -0.31
SYNE2-215ENST00000554997 CCDC30Q5VVM6 783 aa13.14□□□□□ -0.31
SYNE2-215ENST00000554997 DEFB132Q7Z7B7 95 aa13.14□□□□□ -0.31
SYNE2-215ENST00000554997 POTEDQ86YR6 584 aa13.14□□□□□ -0.31
SYNE2-215ENST00000554997 KAT6BQ8WYB5 2073 aa13.13□□□□□ -0.31
SYNE2-215ENST00000554997 HDGFL1Q5TGJ6 251 aa13.13□□□□□ -0.31
SYNE2-215ENST00000554997 BTAF1O14981 1849 aa13.13□□□□□ -0.31
SYNE2-215ENST00000554997 VIRMAQ69YN4 1812 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms