RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 EXOC6BQ9Y2D4 811 aa11.4□□□□□ -0.59
SIX4-202ENST00000554079 MED14O60244 1454 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 MAGEA9P43362 315 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 CLCN6P51797 869 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 DNAJC21Q5F1R6 531 aaKnown RBP11.39□□□□□ -0.59
SIX4-202ENST00000554079 CCDC91Q7Z6B0 441 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 ITPRIPQ8IWB1 547 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 GOLGA5Q8TBA6 731 aa11.39□□□□□ -0.59
SIX4-202ENST00000554079 POLR3AO14802 1390 aaPredicted RBP11.38□□□□□ -0.59
SIX4-202ENST00000554079 IRF6O14896 467 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 CDC42BPAQ5VT25 1732 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 NOS1P29475 1434 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 RPAP1Q9BWH6 1393 aaPredicted RBP11.38□□□□□ -0.59
SIX4-202ENST00000554079 SLU7O95391 586 aaKnown RBP11.38□□□□□ -0.59
SIX4-202ENST00000554079 MCCP23508 829 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 PLCB2Q00722 1185 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 TPD52L1Q16890 204 aaPredicted RBP11.38□□□□□ -0.59
SIX4-202ENST00000554079 ZSCAN25Q6NSZ9 544 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 NYAP1Q6ZVC0 841 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 CCDC186Q7Z3E2 898 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 GDPD2Q9HCC8 539 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 RAI14Q9P0K7 980 aa11.38□□□□□ -0.59
SIX4-202ENST00000554079 PPIP5K1Q6PFW1 1433 aa11.37□□□□□ -0.59
SIX4-202ENST00000554079 GSPT1P15170 499 aaKnown RBP11.37□□□□□ -0.59
SIX4-202ENST00000554079 REXO1L1PQ8IX06 675 aa11.37□□□□□ -0.59
SIX4-202ENST00000554079 MNS1Q8NEH6 495 aa11.37□□□□□ -0.59
SIX4-202ENST00000554079 DISP1Q96F81 1524 aa11.37□□□□□ -0.59
SIX4-202ENST00000554079 CCDC171Q6TFL3 1326 aa11.37□□□□□ -0.59
SIX4-202ENST00000554079 U2SURPO15042 1029 aaKnown RBP11.36□□□□□ -0.59
SIX4-202ENST00000554079 POLR3GO15318 223 aaPredicted RBP11.36□□□□□ -0.59
SIX4-202ENST00000554079 HTATSF1O43719 755 aaKnown RBP11.36□□□□□ -0.59
SIX4-202ENST00000554079 CUL4AQ13619 759 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 MCTP2Q6DN12 878 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 DEF6Q9H4E7 631 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 NUP155O75694 1391 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 TDO2P48775 406 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 NOM1Q5C9Z4 860 aaKnown RBP11.36□□□□□ -0.59
SIX4-202ENST00000554079 TMEM57Q8N5G2 664 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 ZNF592Q92610 1267 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 SGSM3Q96HU1 749 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 PSD3Q9NYI0 1048 aa11.36□□□□□ -0.59
SIX4-202ENST00000554079 TUBGCP6Q96RT7 1819 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 CT47B1P0C2W7 299 aaPredicted RBP11.35□□□□□ -0.59
SIX4-202ENST00000554079 GPS2Q13227 327 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 CCDC27Q2M243 656 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 ATF7IPQ6VMQ6 1270 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 FAM43BQ6ZT52 329 aaPredicted RBP11.35□□□□□ -0.59
SIX4-202ENST00000554079 RNF217Q8TC41 542 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 STK26Q9P289 416 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 RRP7AQ9Y3A4 280 aaKnown RBP11.35□□□□□ -0.59
SIX4-202ENST00000554079 ATAD2Q6PL18 1390 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 CPP00450 1065 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 ARHGEF5Q12774 1597 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 E2F4Q16254 413 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 ANKRD45Q5TZF3 282 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 RUNDC1Q96C34 613 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 GCC1Q96CN9 775 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 TMX3Q96JJ7 454 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 NRBP1Q9UHY1 535 aa11.35□□□□□ -0.59
SIX4-202ENST00000554079 KNDC1Q76NI1 1749 aa11.34□□□□□ -0.59
SIX4-202ENST00000554079 USP27XA6NNY8 438 aa11.34□□□□□ -0.59
SIX4-202ENST00000554079 GOLIM4O00461 696 aa11.34□□□□□ -0.59
SIX4-202ENST00000554079 NPM1P06748 294 aaKnown RBP eCLIP11.34□□□□□ -0.59
SIX4-202ENST00000554079 MAP2K1Q02750 393 aaPredicted RBP11.34□□□□□ -0.59
SIX4-202ENST00000554079 OAS2P29728 719 aaKnown RBP11.33□□□□□ -0.6
SIX4-202ENST00000554079 GIMAP6Q6P9H5 292 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 TCP11L2Q8N4U5 519 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 CACTINQ8WUQ7 758 aaKnown RBP11.33□□□□□ -0.6
SIX4-202ENST00000554079 CEP89Q96ST8 783 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 SPAG9O60271 1321 aaKnown RBP11.33□□□□□ -0.6
SIX4-202ENST00000554079 ATP6V1AP38606 617 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 NEUROD2Q15784 382 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 ERCC6LQ2NKX8 1250 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.33□□□□□ -0.6
SIX4-202ENST00000554079 PLA2G4DQ86XP0 818 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 L2HGDHQ9H9P8 463 aa11.33□□□□□ -0.6
SIX4-202ENST00000554079 MADDQ8WXG6 1647 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 ATP8B1O43520 1251 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 UBE2HP62256 183 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 LRRN4CLQ8ND94 238 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 EXOC4Q96A65 974 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 INTS4Q96HW7 963 aaKnown RBP11.32□□□□□ -0.6
SIX4-202ENST00000554079 ZSCAN16Q9H4T2 348 aaPredicted RBP11.32□□□□□ -0.6
SIX4-202ENST00000554079 MYOM2P54296 1465 aa11.32□□□□□ -0.6
SIX4-202ENST00000554079 ZNF853P0CG23 659 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 ACTN2P35609 894 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 ZNF75DP51815 510 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 PTPN14Q15678 1187 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 MMS22LQ6ZRQ5 1243 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 PPM1EQ8WY54 764 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 SSH1Q8WYL5 1049 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 ELP1O95163 1332 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 ZC3H13Q5T200 1668 aaKnown RBP11.31□□□□□ -0.6
SIX4-202ENST00000554079 ADGRL1O94910 1474 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 SHANK2Q9UPX8 1470 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 EIF3CLB5ME19 914 aaKnown RBP11.31□□□□□ -0.6
SIX4-202ENST00000554079 CCDC93Q567U6 631 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 FAM200AQ8TCP9 573 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
SIX4-202ENST00000554079 AK7Q96M32 723 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms