RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 A0A1W2PP64 1363 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 PLEKHG1Q9ULL1 1385 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 AKAP12Q02952 1782 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 ATP7BP35670 1465 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 FAM187AA6NFU0 413 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 SRPK2P78362 688 aaKnown RBP7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 TTC13Q8NBP0 860 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 TSHZ2Q9NRE2 1034 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 MINK1Q8N4C8 1332 aaPredicted RBP7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 METP08581 1390 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 PLEKHH1Q9ULM0 1364 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 ADAMTS13Q76LX8 1427 aa7.93□□□□□ -1.14
VIPAS39-204ENST00000553576 WASLO00401 505 aaPredicted RBP7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 FYB1O15117 783 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 MTHFSP49914 203 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 RRP1P56182 461 aaKnown RBP7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 IRX6P78412 446 aaPredicted RBP7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 SLFN5Q08AF3 891 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 DUSP27Q5VZP5 1158 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 HDGFL2Q7Z4V5 671 aaPredicted RBP7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 ANKLE1Q8NAG6 615 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 CFAP53Q96M91 514 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 PCDHB3Q9Y5E6 796 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 CPSF1Q10570 1443 aaKnown RBP7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 ADGRB2O60241 1585 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 CDC42BPGQ6DT37 1551 aa7.92□□□□□ -1.14
VIPAS39-204ENST00000553576 GRXCR2A6NFK2 248 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 ST8SIA5O15466 376 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 TLL1O43897 1013 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 GDF9O60383 454 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 SAFB2Q14151 953 aaKnown RBP eCLIP7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 CCDC27Q2M243 656 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 ZNF697Q5TEC3 545 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 BLOC1S3Q6QNY0 202 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 LIAT1Q6ZQX7 453 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 WAPLQ7Z5K2 1190 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 RUNDC1Q96C34 613 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 PRR14Q9BWN1 585 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 TBX22Q9Y458 520 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 PNPLA6Q8IY17 1366 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 MON2Q7Z3U7 1717 aa7.91□□□□□ -1.14
VIPAS39-204ENST00000553576 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 DIP2AQ14689 1571 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 TNFRSF10AO00220 468 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 APAF1O14727 1248 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 LTKP29376 864 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 THEMISQ8N1K5 641 aaPredicted RBP7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 AAASQ9NRG9 546 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 CABP1Q9NZU7 370 aa7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 SALL2Q9Y467 1007 aaPredicted RBP7.9□□□□□ -1.14
VIPAS39-204ENST00000553576 ITSN1Q15811 1721 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 E9PSI1 815 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 OSBPP22059 807 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 SLC4A3P48751 1232 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 PADI6Q6TGC4 694 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 TXNDC2Q86VQ3 553 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 WDR63Q8IWG1 891 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 EID1Q9Y6B2 187 aa7.89□□□□□ -1.15
VIPAS39-204ENST00000553576 COL3A1P02461 1466 aaPredicted RBP7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 IQSEC2Q5JU85 1478 aa7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 EDC4Q6P2E9 1401 aaKnown RBP7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 PLEKHG3A1L390 1219 aa7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 PPEF1O14829 653 aaPredicted RBP7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 S1PR4O95977 384 aa7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 WWC1Q8IX03 1113 aa7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 NUDT16Q96DE0 195 aaKnown RBP7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 TOPAZ1Q8N9V7 1692 aa7.88□□□□□ -1.15
VIPAS39-204ENST00000553576 NKTRP30414 1462 aaKnown RBP7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 AATKQ6ZMQ8 1374 aa7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 PIK3R4Q99570 1358 aa7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 ADAMTSL3P82987 1691 aa7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 SENP3-EIF4A1A0A087X0R7 540 aa7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 CEBPAP49715 358 aaPredicted RBP7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 CCDC146Q8IYE0 955 aa7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 PNNQ9H307 717 aaKnown RBP7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 CHD2O14647 1828 aaKnown RBP7.87□□□□□ -1.15
VIPAS39-204ENST00000553576 PPIP5K1Q6PFW1 1433 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 ROBO2Q9HCK4 1378 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 ZNF142P52746 1687 aaPredicted RBP7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 RIMS1Q86UR5 1692 aaKnown RBP7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 B4GALNT3Q6L9W6 998 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 TCP11L2Q8N4U5 519 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 PLEKHF1Q96S99 279 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 EYA1Q99502 592 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 GGNBP2Q9H3C7 697 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 XRN1Q8IZH2 1706 aaKnown RBP7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 PTCH1Q13635 1447 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 PTPRUQ92729 1446 aa7.86□□□□□ -1.15
VIPAS39-204ENST00000553576 RGPD8O14715 1765 aaPredicted RBP7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 TNNT2P45379 298 aaPredicted RBP7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 CCDC136Q96JN2 1154 aa7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 NPDC1Q9NQX5 325 aaPredicted RBP7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 ARIH1Q9Y4X5 557 aaPredicted RBP7.85□□□□□ -1.15
VIPAS39-204ENST00000553576 CEP170BQ9Y4F5 1589 aaPredicted RBP7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 DIAPH1O60610 1272 aaKnown RBP7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 FCHSD2O94868 740 aa7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 EXOC6Q8TAG9 804 aa7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 BBXQ8WY36 941 aaPredicted RBP7.84□□□□□ -1.15
VIPAS39-204ENST00000553576 POLKQ9UBT6 870 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms