RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 ONECUT3O60422 494 aaPredicted RBP12.8□□□□□ -0.36
TMEM260-204ENST00000553335 TMPOP42166 694 aaKnown RBP12.8□□□□□ -0.36
TMEM260-204ENST00000553335 RIPK4P57078 832 aa12.8□□□□□ -0.36
TMEM260-204ENST00000553335 LMOD3Q0VAK6 560 aa12.8□□□□□ -0.36
TMEM260-204ENST00000553335 AKAP4Q5JQC9 854 aa12.8□□□□□ -0.36
TMEM260-204ENST00000553335 ZNF530Q6P9A1 599 aaPredicted RBP12.8□□□□□ -0.36
TMEM260-204ENST00000553335 IFNL2Q8IZJ0 200 aa12.8□□□□□ -0.36
TMEM260-204ENST00000553335 BRWD3Q6RI45 1802 aa12.8□□□□□ -0.36
TMEM260-204ENST00000553335 SCN11AQ9UI33 1791 aa12.79□□□□□ -0.36
TMEM260-204ENST00000553335 GNAT3A8MTJ3 354 aa12.79□□□□□ -0.36
TMEM260-204ENST00000553335 HSP90AB1P08238 724 aaKnown RBP12.79□□□□□ -0.36
TMEM260-204ENST00000553335 HNRNPUQ00839 825 aaKnown RBP eCLIP12.79□□□□□ -0.36
TMEM260-204ENST00000553335 NEUROD2Q15784 382 aa12.79□□□□□ -0.36
TMEM260-204ENST00000553335 RTF1Q92541 710 aaKnown RBP12.79□□□□□ -0.36
TMEM260-204ENST00000553335 HTATSF1O43719 755 aaKnown RBP12.78□□□□□ -0.36
TMEM260-204ENST00000553335 PDE3BQ13370 1112 aa12.78□□□□□ -0.36
TMEM260-204ENST00000553335 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
TMEM260-204ENST00000553335 SEPT12Q8IYM1 358 aa12.78□□□□□ -0.36
TMEM260-204ENST00000553335 SPRYD3Q8NCJ5 442 aa12.78□□□□□ -0.36
TMEM260-204ENST00000553335 RRP7AQ9Y3A4 280 aaKnown RBP12.78□□□□□ -0.36
TMEM260-204ENST00000553335 MAP3K5Q99683 1374 aa12.78□□□□□ -0.36
TMEM260-204ENST00000553335 PHKG2P15735 406 aa12.77□□□□□ -0.37
TMEM260-204ENST00000553335 CCDC27Q2M243 656 aa12.77□□□□□ -0.37
TMEM260-204ENST00000553335 DDX54Q8TDD1 881 aaKnown RBP12.77□□□□□ -0.37
TMEM260-204ENST00000553335 SALL2Q9Y467 1007 aaPredicted RBP12.77□□□□□ -0.37
TMEM260-204ENST00000553335 CYP27B1O15528 508 aa12.76□□□□□ -0.37
TMEM260-204ENST00000553335 MNX1P50219 401 aaPredicted RBP12.76□□□□□ -0.37
TMEM260-204ENST00000553335 ADAMTS7Q9UKP4 1686 aa12.76□□□□□ -0.37
TMEM260-204ENST00000553335 SENP3-EIF4A1A0A087X0R7 540 aa12.75□□□□□ -0.37
TMEM260-204ENST00000553335 YTHDC1Q96MU7 727 aaKnown RBP12.75□□□□□ -0.37
TMEM260-204ENST00000553335 ITGB4P16144 1822 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 DOT1LQ8TEK3 1739 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 CALD1Q05682 793 aaKnown RBP12.74□□□□□ -0.37
TMEM260-204ENST00000553335 NKX1-1Q15270 411 aaPredicted RBP12.74□□□□□ -0.37
TMEM260-204ENST00000553335 MPRIPQ6WCQ1 1025 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 UPF1Q92900 1129 aaKnown RBP eCLIP12.74□□□□□ -0.37
TMEM260-204ENST00000553335 DCAF5Q96JK2 942 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 TRIM35Q9UPQ4 493 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 KAT6BQ8WYB5 2073 aa12.74□□□□□ -0.37
TMEM260-204ENST00000553335 RGS12O14924 1447 aa12.73□□□□□ -0.37
TMEM260-204ENST00000553335 SIPA1L3O60292 1781 aaPredicted RBP12.73□□□□□ -0.37
TMEM260-204ENST00000553335 SBF2Q86WG5 1849 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 ZBED9Q6R2W3 1325 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 TOGARAM1Q9Y4F4 1720 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 RNMTO43148 476 aaKnown RBP12.72□□□□□ -0.37
TMEM260-204ENST00000553335 TEFQ10587 303 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 MCM10Q7L590 875 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 KRT27Q7Z3Y8 459 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 WWC1Q8IX03 1113 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 MARCH10Q8NA82 808 aaPredicted RBP12.72□□□□□ -0.37
TMEM260-204ENST00000553335 RNF25Q96BH1 459 aaPredicted RBP12.72□□□□□ -0.37
TMEM260-204ENST00000553335 FAM212AQ96EL1 285 aa12.72□□□□□ -0.37
TMEM260-204ENST00000553335 ERVV-2B6SEH9 535 aa12.71□□□□□ -0.37
TMEM260-204ENST00000553335 DCTN1Q14203 1278 aa12.71□□□□□ -0.37
TMEM260-204ENST00000553335 HS6ST3Q8IZP7 471 aa12.71□□□□□ -0.37
TMEM260-204ENST00000553335 IL17REQ8NFR9 667 aa12.71□□□□□ -0.37
TMEM260-204ENST00000553335 LGR6Q9HBX8 967 aa12.71□□□□□ -0.37
TMEM260-204ENST00000553335 KDM6AO15550 1401 aaPredicted RBP12.71□□□□□ -0.38
TMEM260-204ENST00000553335 CEMIPQ8WUJ3 1361 aa12.7□□□□□ -0.38
TMEM260-204ENST00000553335 CABP4P57796 275 aa12.7□□□□□ -0.38
TMEM260-204ENST00000553335 GOLGA2Q08379 1002 aa12.69□□□□□ -0.38
TMEM260-204ENST00000553335 TAOK2Q9UL54 1235 aa12.69□□□□□ -0.38
TMEM260-204ENST00000553335 NHSQ6T4R5 1651 aa12.69□□□□□ -0.38
TMEM260-204ENST00000553335 BCL9O00512 1426 aa12.69□□□□□ -0.38
TMEM260-204ENST00000553335 IL16Q14005 1332 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 ZNF521Q96K83 1311 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 MRC1P22897 1456 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 PITPNM1O00562 1244 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 GNAI1P63096 354 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 TAF7Q15545 349 aaPredicted RBP12.68□□□□□ -0.38
TMEM260-204ENST00000553335 FAM196AQ6ZSG2 479 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 THUMPD2Q9BTF0 503 aaKnown RBP12.68□□□□□ -0.38
TMEM260-204ENST00000553335 SLC52A2Q9HAB3 445 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 KDM3BQ7LBC6 1761 aa12.68□□□□□ -0.38
TMEM260-204ENST00000553335 NFATC2IPQ8NCF5 419 aa12.67□□□□□ -0.38
TMEM260-204ENST00000553335 SYTL4Q96C24 671 aaPredicted RBP12.67□□□□□ -0.38
TMEM260-204ENST00000553335 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
TMEM260-204ENST00000553335 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
TMEM260-204ENST00000553335 TMOD3Q9NYL9 352 aa12.67□□□□□ -0.38
TMEM260-204ENST00000553335 LAS1LQ9Y4W2 734 aaKnown RBP12.67□□□□□ -0.38
TMEM260-204ENST00000553335 BTBD11A6QL63 1104 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 E9PSI1 815 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 RIOK3O14730 519 aaKnown RBP12.66□□□□□ -0.38
TMEM260-204ENST00000553335 FAM182BQ5T319 152 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 ACSBG1Q96GR2 724 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 PAPPAQ13219 1627 aa12.66□□□□□ -0.38
TMEM260-204ENST00000553335 BTAF1O14981 1849 aa12.65□□□□□ -0.38
TMEM260-204ENST00000553335 CHRM1P11229 460 aaPredicted RBP12.65□□□□□ -0.38
TMEM260-204ENST00000553335 PRIM1P49642 420 aaKnown RBP12.65□□□□□ -0.38
TMEM260-204ENST00000553335 SLFN5Q08AF3 891 aa12.64□□□□□ -0.39
TMEM260-204ENST00000553335 RASEFQ8IZ41 740 aa12.64□□□□□ -0.39
TMEM260-204ENST00000553335 TTC5Q8N0Z6 440 aa12.64□□□□□ -0.39
TMEM260-204ENST00000553335 TSPYL4Q9UJ04 414 aa12.64□□□□□ -0.39
TMEM260-204ENST00000553335 UBR2Q8IWV8 1755 aa12.64□□□□□ -0.39
TMEM260-204ENST00000553335 CHL1O00533 1208 aa12.63□□□□□ -0.39
TMEM260-204ENST00000553335 ZNF853P0CG23 659 aa12.63□□□□□ -0.39
TMEM260-204ENST00000553335 TSHZ2Q9NRE2 1034 aa12.63□□□□□ -0.39
TMEM260-204ENST00000553335 PIGBQ92521 554 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms