RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 AMIGO3Q86WK7 504 aa25.93■■□□□ 1.74
PTCH1-227ENST00000553256 PHACTR3Q96KR7 559 aa25.92■■□□□ 1.74
PTCH1-227ENST00000553256 C4BP0C0L5 1744 aa25.91■■□□□ 1.74
PTCH1-227ENST00000553256 RNMTO43148 476 aaKnown RBP25.91■■□□□ 1.74
PTCH1-227ENST00000553256 NFATC2IPQ8NCF5 419 aa25.91■■□□□ 1.74
PTCH1-227ENST00000553256 MTFR1LQ9H019 292 aa25.91■■□□□ 1.74
PTCH1-227ENST00000553256 LINC00116Q8NCU8 138 aa25.9■■□□□ 1.74
PTCH1-227ENST00000553256 CABP4P57796 275 aa25.89■■□□□ 1.74
PTCH1-227ENST00000553256 PRKAR2BP31323 418 aa25.88■■□□□ 1.73
PTCH1-227ENST00000553256 RALBP1Q15311 655 aa25.88■■□□□ 1.73
PTCH1-227ENST00000553256 COL23A1Q86Y22 540 aaPredicted RBP25.88■■□□□ 1.73
PTCH1-227ENST00000553256 SLC52A2Q9HAB3 445 aa25.88■■□□□ 1.73
PTCH1-227ENST00000553256 TFCP2L1Q9NZI6 479 aa25.88■■□□□ 1.73
PTCH1-227ENST00000553256 FCHSD2O94868 740 aa25.87■■□□□ 1.73
PTCH1-227ENST00000553256 SLC16A10Q8TF71 515 aa25.87■■□□□ 1.73
PTCH1-227ENST00000553256 NUDCQ9Y266 331 aa25.87■■□□□ 1.73
PTCH1-227ENST00000553256 ATF5Q9Y2D1 282 aaPredicted RBP25.87■■□□□ 1.73
PTCH1-227ENST00000553256 CICQ96RK0 1608 aaPredicted RBP25.87■■□□□ 1.73
PTCH1-227ENST00000553256 IL17REQ8NFR9 667 aa25.86■■□□□ 1.73
PTCH1-227ENST00000553256 UBR3Q6ZT12 1888 aa25.85■■□□□ 1.73
PTCH1-227ENST00000553256 CEMIPQ8WUJ3 1361 aa25.84■■□□□ 1.73
PTCH1-227ENST00000553256 MAP3K5Q99683 1374 aa25.84■■□□□ 1.73
PTCH1-227ENST00000553256 U2AF1L5P0DN76 240 aaPredicted RBP25.84■■□□□ 1.73
PTCH1-227ENST00000553256 ATP6V1AP38606 617 aa25.84■■□□□ 1.73
PTCH1-227ENST00000553256 U2AF1Q01081 240 aaKnown RBP eCLIP25.84■■□□□ 1.73
PTCH1-227ENST00000553256 GAS2L2Q8NHY3 880 aa25.84■■□□□ 1.73
PTCH1-227ENST00000553256 VIRMAQ69YN4 1812 aaKnown RBP25.84■■□□□ 1.73
PTCH1-227ENST00000553256 HMGB2P26583 209 aaKnown RBP25.83■■□□□ 1.73
PTCH1-227ENST00000553256 COL5A3P25940 1745 aaPredicted RBP25.83■■□□□ 1.72
PTCH1-227ENST00000553256 PLEKHF1Q96S99 279 aa25.82■■□□□ 1.72
PTCH1-227ENST00000553256 KCPQ6ZWJ8 1503 aa25.82■■□□□ 1.72
PTCH1-227ENST00000553256 GNAT3A8MTJ3 354 aa25.8■■□□□ 1.72
PTCH1-227ENST00000553256 SMIM5Q71RC9 77 aa25.8■■□□□ 1.72
PTCH1-227ENST00000553256 TJP1Q07157 1748 aa25.8■■□□□ 1.72
PTCH1-227ENST00000553256 SIPA1L3O60292 1781 aaPredicted RBP25.79■■□□□ 1.72
PTCH1-227ENST00000553256 RC3H1Q5TC82 1133 aaKnown RBP25.78■■□□□ 1.72
PTCH1-227ENST00000553256 MYBBP1AQ9BQG0 1328 aaKnown RBP25.78■■□□□ 1.72
PTCH1-227ENST00000553256 CNTNAP4Q9C0A0 1308 aa25.78■■□□□ 1.72
PTCH1-227ENST00000553256 SSFA2P28290 1259 aa25.77■■□□□ 1.72
PTCH1-227ENST00000553256 FLAD1Q8NFF5 587 aa25.77■■□□□ 1.72
PTCH1-227ENST00000553256 RBM42Q9BTD8 480 aaKnown RBP25.77■■□□□ 1.72
PTCH1-227ENST00000553256 PRKRIP1Q9H875 184 aaPredicted RBP25.77■■□□□ 1.72
PTCH1-227ENST00000553256 MYH14Q7Z406 1995 aaKnown RBP25.76■■□□□ 1.72
PTCH1-227ENST00000553256 PTCD1O75127 700 aaKnown RBP25.76■■□□□ 1.71
PTCH1-227ENST00000553256 SLC39A6Q13433 755 aa25.76■■□□□ 1.71
PTCH1-227ENST00000553256 AK7Q96M32 723 aa25.76■■□□□ 1.71
PTCH1-227ENST00000553256 UBR2Q8IWV8 1755 aa25.76■■□□□ 1.71
PTCH1-227ENST00000553256 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.75■■□□□ 1.71
PTCH1-227ENST00000553256 ARXQ96QS3 562 aa25.73■■□□□ 1.71
PTCH1-227ENST00000553256 GNPATO15228 680 aa25.72■■□□□ 1.71
PTCH1-227ENST00000553256 FHDC1Q9C0D6 1143 aaPredicted RBP25.71■■□□□ 1.71
PTCH1-227ENST00000553256 PPP1R1BQ9UD71 204 aaPredicted RBP25.71■■□□□ 1.71
PTCH1-227ENST00000553256 HTATSF1O43719 755 aaKnown RBP25.7■■□□□ 1.7
PTCH1-227ENST00000553256 RPS6KA4O75676 772 aa25.7■■□□□ 1.7
PTCH1-227ENST00000553256 INTS5Q6P9B9 1019 aaKnown RBP25.7■■□□□ 1.7
PTCH1-227ENST00000553256 VSIG10Q8N0Z9 540 aa25.7■■□□□ 1.7
PTCH1-227ENST00000553256 SYT17Q9BSW7 474 aa25.7■■□□□ 1.7
PTCH1-227ENST00000553256 UTRNP46939 3433 aa25.7■■□□□ 1.7
PTCH1-227ENST00000553256 DNAJC10Q8IXB1 793 aa25.69■■□□□ 1.7
PTCH1-227ENST00000553256 PHF14O94880 888 aa25.68■■□□□ 1.7
PTCH1-227ENST00000553256 CRKLP46109 303 aaKnown RBP25.68■■□□□ 1.7
PTCH1-227ENST00000553256 ZNF790Q6PG37 636 aa25.68■■□□□ 1.7
PTCH1-227ENST00000553256 ZNF316A6NFI3 1004 aaPredicted RBP25.67■■□□□ 1.7
PTCH1-227ENST00000553256 CYP19A1P11511 503 aaPredicted RBP25.67■■□□□ 1.7
PTCH1-227ENST00000553256 MCM10Q7L590 875 aa25.67■■□□□ 1.7
PTCH1-227ENST00000553256 ADRA2BP18089 450 aa25.66■■□□□ 1.7
PTCH1-227ENST00000553256 TEFQ10587 303 aa25.66■■□□□ 1.7
PTCH1-227ENST00000553256 MSL1Q68DK7 614 aa25.66■■□□□ 1.7
PTCH1-227ENST00000553256 ARHGEF1Q92888 912 aaKnown RBP25.66■■□□□ 1.7
PTCH1-227ENST00000553256 ZNF496Q96IT1 587 aaPredicted RBP25.66■■□□□ 1.7
PTCH1-227ENST00000553256 MSH5O43196 834 aa25.65■■□□□ 1.7
PTCH1-227ENST00000553256 KCNQ3O43525 872 aa25.65■■□□□ 1.7
PTCH1-227ENST00000553256 DCTN1Q14203 1278 aa25.65■■□□□ 1.7
PTCH1-227ENST00000553256 RTCBQ9Y3I0 505 aaKnown RBP25.65■■□□□ 1.7
PTCH1-227ENST00000553256 POLD1P28340 1107 aa25.64■■□□□ 1.7
PTCH1-227ENST00000553256 NFE2L2Q16236 605 aa25.64■■□□□ 1.7
PTCH1-227ENST00000553256 DLG5Q8TDM6 1919 aa25.63■■□□□ 1.69
PTCH1-227ENST00000553256 HEG1Q9ULI3 1381 aa25.63■■□□□ 1.69
PTCH1-227ENST00000553256 C4AP0C0L4 1744 aa25.63■■□□□ 1.69
PTCH1-227ENST00000553256 TRAPPC3LQ5T215 181 aa25.62■■□□□ 1.69
PTCH1-227ENST00000553256 SOS1Q07889 1333 aaPredicted RBP25.62■■□□□ 1.69
PTCH1-227ENST00000553256 CCDC87Q9NVE4 849 aa25.61■■□□□ 1.69
PTCH1-227ENST00000553256 GOLGB1Q14789 3259 aaKnown RBP25.61■■□□□ 1.69
PTCH1-227ENST00000553256 GYS1P13807 737 aa25.6■■□□□ 1.69
PTCH1-227ENST00000553256 BTBD11A6QL63 1104 aa25.59■■□□□ 1.69
PTCH1-227ENST00000553256 RTF1Q92541 710 aaKnown RBP25.59■■□□□ 1.69
PTCH1-227ENST00000553256 ZBTB1Q9Y2K1 713 aa25.59■■□□□ 1.69
PTCH1-227ENST00000553256 TTC5Q8N0Z6 440 aa25.58■■□□□ 1.69
PTCH1-227ENST00000553256 PNNQ9H307 717 aaKnown RBP25.58■■□□□ 1.69
PTCH1-227ENST00000553256 ADAMTS8Q9UP79 889 aa25.57■■□□□ 1.68
PTCH1-227ENST00000553256 NLGN2Q8NFZ4 835 aa25.56■■□□□ 1.68
PTCH1-227ENST00000553256 FMNL2Q96PY5 1086 aa25.56■■□□□ 1.68
PTCH1-227ENST00000553256 USP42Q9H9J4 1324 aaKnown RBP25.56■■□□□ 1.68
PTCH1-227ENST00000553256 TAF7Q15545 349 aaPredicted RBP25.55■■□□□ 1.68
PTCH1-227ENST00000553256 TMPOP42166 694 aaKnown RBP25.54■■□□□ 1.68
PTCH1-227ENST00000553256 EIF5P55010 431 aaKnown RBP25.54■■□□□ 1.68
PTCH1-227ENST00000553256 CCDC184Q52MB2 194 aa25.54■■□□□ 1.68
PTCH1-227ENST00000553256 THUMPD2Q9BTF0 503 aaKnown RBP25.54■■□□□ 1.68
PTCH1-227ENST00000553256 SRP68Q9UHB9 627 aaKnown RBP25.54■■□□□ 1.68
PTCH1-227ENST00000553256 NLGN1Q8N2Q7 840 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms