RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 WDR90Q96KV7 1748 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 CPSF1Q10570 1443 aaKnown RBP7.47□□□□□ -1.21
CKAP4-203ENST00000553039 C10orf71Q711Q0 1435 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 GLTPD2A6NH11 291 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 PHF14O94880 888 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 MMP10P09238 476 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 DPEP1P16444 411 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 MAP2K1Q02750 393 aaPredicted RBP7.47□□□□□ -1.21
CKAP4-203ENST00000553039 WBP1LQ9NX94 342 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 ERBB3P21860 1342 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 TTC21BQ7Z4L5 1316 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 TTC21AQ8NDW8 1320 aa7.47□□□□□ -1.21
CKAP4-203ENST00000553039 NSD3Q9BZ95 1437 aa7.46□□□□□ -1.21
CKAP4-203ENST00000553039 PAPPAQ13219 1627 aa7.46□□□□□ -1.21
CKAP4-203ENST00000553039 BRPF1P55201 1214 aaPredicted RBP7.46□□□□□ -1.22
CKAP4-203ENST00000553039 TMF1P82094 1093 aa7.46□□□□□ -1.22
CKAP4-203ENST00000553039 COL24A1Q17RW2 1714 aa7.45□□□□□ -1.22
CKAP4-203ENST00000553039 TRAPPC3LQ5T215 181 aa7.45□□□□□ -1.22
CKAP4-203ENST00000553039 DCAF8Q5TAQ9 597 aa7.45□□□□□ -1.22
CKAP4-203ENST00000553039 BEGAINQ9BUH8 593 aa7.45□□□□□ -1.22
CKAP4-203ENST00000553039 PARP3Q9Y6F1 533 aa7.45□□□□□ -1.22
CKAP4-203ENST00000553039 CHADLQ6NUI6 762 aa7.44□□□□□ -1.22
CKAP4-203ENST00000553039 MPRIPQ6WCQ1 1025 aa7.44□□□□□ -1.22
CKAP4-203ENST00000553039 KCNV2Q8TDN2 545 aa7.44□□□□□ -1.22
CKAP4-203ENST00000553039 DCAF5Q96JK2 942 aa7.44□□□□□ -1.22
CKAP4-203ENST00000553039 NHSQ6T4R5 1651 aa7.44□□□□□ -1.22
CKAP4-203ENST00000553039 AKAP12Q02952 1782 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 LMNB1P20700 586 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 VEGFBP49765 207 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 PPARGC1BQ86YN6 1023 aaKnown RBP7.43□□□□□ -1.22
CKAP4-203ENST00000553039 IP6K1Q92551 441 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 FAM212AQ96EL1 285 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 CGNL1Q0VF96 1302 aa7.43□□□□□ -1.22
CKAP4-203ENST00000553039 KCPQ6ZWJ8 1503 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 QSER1Q2KHR3 1735 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.42□□□□□ -1.22
CKAP4-203ENST00000553039 KCNA3P22001 575 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 DEFB115Q30KQ5 88 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 SMIM5Q71RC9 77 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 LTV1Q96GA3 475 aaPredicted RBP7.42□□□□□ -1.22
CKAP4-203ENST00000553039 ZFP91Q96JP5 570 aaPredicted RBP7.42□□□□□ -1.22
CKAP4-203ENST00000553039 STK24Q9Y6E0 443 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 EVC2Q86UK5 1308 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 PXDNLA1KZ92 1463 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 SLIT3O75094 1523 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 ABCC6O95255 1503 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 ADGRB1O14514 1584 aa7.42□□□□□ -1.22
CKAP4-203ENST00000553039 TMEM88BA6NKF7 163 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 GNPATO15228 680 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 HSPA8P11142 646 aaKnown RBP7.41□□□□□ -1.22
CKAP4-203ENST00000553039 RAPGEF4Q8WZA2 1011 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 RTCBQ9Y3I0 505 aaKnown RBP7.41□□□□□ -1.22
CKAP4-203ENST00000553039 CENPJQ9HC77 1338 aaPredicted RBP7.41□□□□□ -1.22
CKAP4-203ENST00000553039 CNTNAP1P78357 1384 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 PALLDQ8WX93 1383 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 TRPM1Q7Z4N2 1603 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 ITSN1Q15811 1721 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 BTAF1O14981 1849 aa7.41□□□□□ -1.22
CKAP4-203ENST00000553039 RFC4P35249 363 aa7.4□□□□□ -1.22
CKAP4-203ENST00000553039 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.4□□□□□ -1.22
CKAP4-203ENST00000553039 LOC102724428A0A0B4J2F2 783 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 TATP17735 454 aaPredicted RBP7.39□□□□□ -1.23
CKAP4-203ENST00000553039 ATP6V1AP38606 617 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 AMPHP49418 695 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 SIK1P57059 783 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 GCC1Q96CN9 775 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 WDR70Q9NW82 654 aa7.39□□□□□ -1.23
CKAP4-203ENST00000553039 COL18A1P39060 1754 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 PCNTO95613 3336 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 NSD2O96028 1365 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 IQCA1LA6NCM1 817 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 POTECB2RU33 542 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 MNX1P50219 401 aaPredicted RBP7.38□□□□□ -1.23
CKAP4-203ENST00000553039 PRPF38BQ5VTL8 546 aaKnown RBP7.38□□□□□ -1.23
CKAP4-203ENST00000553039 AMIGO3Q86WK7 504 aa7.38□□□□□ -1.23
CKAP4-203ENST00000553039 CICQ96RK0 1608 aaPredicted RBP7.38□□□□□ -1.23
CKAP4-203ENST00000553039 USP31Q70CQ4 1352 aa7.37□□□□□ -1.23
CKAP4-203ENST00000553039 KTN1Q86UP2 1357 aaKnown RBP7.37□□□□□ -1.23
CKAP4-203ENST00000553039 WDR33Q9C0J8 1336 aaKnown RBP7.37□□□□□ -1.23
CKAP4-203ENST00000553039 ECE1P42892 770 aa7.37□□□□□ -1.23
CKAP4-203ENST00000553039 RC3H1Q5TC82 1133 aaKnown RBP7.37□□□□□ -1.23
CKAP4-203ENST00000553039 LDHDQ86WU2 507 aa7.37□□□□□ -1.23
CKAP4-203ENST00000553039 LINC00116Q8NCU8 138 aa7.37□□□□□ -1.23
CKAP4-203ENST00000553039 PIGBQ92521 554 aa7.37□□□□□ -1.23
CKAP4-203ENST00000553039 ARHGEF1Q92888 912 aaKnown RBP7.37□□□□□ -1.23
CKAP4-203ENST00000553039 RASSF10A6NK89 507 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 CA12O43570 354 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 NBPF1Q3BBV0 1214 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 ERFEQ4G0M1 354 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 HDGFL2Q7Z4V5 671 aaPredicted RBP7.36□□□□□ -1.23
CKAP4-203ENST00000553039 TTLL6Q8N841 843 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 ZC3H15Q8WU90 426 aaKnown RBP7.36□□□□□ -1.23
CKAP4-203ENST00000553039 CLEC11AQ9Y240 323 aa7.36□□□□□ -1.23
CKAP4-203ENST00000553039 PASKQ96RG2 1323 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 PCDH11XQ9BZA7 1347 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 PCDH11YQ9BZA8 1340 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 RPS6KA4O75676 772 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 GYS1P13807 737 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 CHRNA5P30532 468 aa7.35□□□□□ -1.23
CKAP4-203ENST00000553039 NME9Q86XW9 330 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms