RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IFT57Q9NWB7 429 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 NCKAP5LQ9HCH0 1330 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 GNAI1P63096 354 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 CUL4AQ13619 759 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 AEBP1Q8IUX7 1158 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 COG3Q96JB2 828 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 YEATS2Q9ULM3 1422 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 IL13P35225 146 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 GIMAP6Q6P9H5 292 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 G2E3Q7L622 706 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 NME9Q86XW9 330 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 SPC24Q8NBT2 197 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 CFAP44Q96MT7 982 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 SRCIN1Q9C0H9 1055 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 RIOK3O14730 519 aaKnown RBP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 ZBTB22O15209 634 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 MBD3O95983 291 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 GTF2F1P35269 517 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 FKBP5Q13451 457 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 LMOD2Q6P5Q4 547 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 MCM10Q7L590 875 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 ZNF428Q96B54 188 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 DLG5Q8TDM6 1919 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 ABCC3O15438 1527 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 REC8O95072 547 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 CPA1P15085 419 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 NUTM2GQ5VZR2 741 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 ESYT1Q9BSJ8 1104 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 API5Q9BZZ5 524 aaKnown RBP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 ANO2Q9NQ90 1003 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 SLC52A1Q9NWF4 448 aa5.88□□□□□ -1.47
LIMA1-214ENST00000552783 RPAP1Q9BWH6 1393 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 MAP2P11137 1827 aaKnown RBP5.88□□□□□ -1.47
LIMA1-214ENST00000552783 KIDINS220Q9ULH0 1771 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 MAP4K4O95819 1239 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 COL9A3Q14050 684 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 UTP14CQ5TAP6 766 aaKnown RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 MTERF4Q7Z6M4 381 aaKnown RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 SPTLC3Q9NUV7 552 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 KIF3AQ9Y496 699 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 SIGLEC1Q9BZZ2 1709 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 HMGN5P82970 282 aaKnown RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 RILPL2Q969X0 211 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 PUS7Q96PZ0 661 aaKnown RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 YTHDC2Q9H6S0 1430 aaKnown RBP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 RPGRIP1LQ68CZ1 1315 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 PNMA6EA0A0J9YXQ4 647 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.87□□□□□ -1.47
LIMA1-214ENST00000552783 RIMS2Q9UQ26 1411 aa5.87□□□□□ -1.47
LIMA1-214ENST00000552783 PTPRMP28827 1452 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 KDM4AO75164 1064 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 LARGE1O95461 756 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 CHMLP26374 656 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 SULT6B1Q6IMI4 303 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 RPAP2Q8IXW5 612 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-214ENST00000552783 KIAA1524Q8TCG1 905 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 RTF1Q92541 710 aaKnown RBP5.86□□□□□ -1.47
LIMA1-214ENST00000552783 PRIMPOLQ96LW4 560 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 SALL3Q9BXA9 1300 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 NEXMIFQ5QGS0 1516 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 FIBPO43427 364 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 LRMPQ12912 555 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 CASC1Q6TDU7 716 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 NGDNQ8NEJ9 315 aaKnown RBP5.86□□□□□ -1.47
LIMA1-214ENST00000552783 DDX54Q8TDD1 881 aaKnown RBP5.86□□□□□ -1.47
LIMA1-214ENST00000552783 SLC26A8Q96RN1 970 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 FUCA2Q9BTY2 467 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 CHMP3Q9Y3E7 222 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 REREQ9P2R6 1566 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 TRIM6-TRIM34B2RNG4 842 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 SLC4A2P04920 1241 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 RASEFQ8IZ41 740 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 PDCL2Q8N4E4 241 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 CHMP4BQ9H444 224 aaKnown RBP5.86□□□□□ -1.47
LIMA1-214ENST00000552783 NRBP1Q9UHY1 535 aa5.86□□□□□ -1.47
LIMA1-214ENST00000552783 CDC42BPGQ6DT37 1551 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 FOXO3O43524 673 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 ANKRD26Q9UPS8 1709 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 MX1P20591 662 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 PTGS1P23219 599 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 FAM173BQ6P4H8 233 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 ANKRD7Q92527 254 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 IL1RAPL2Q9NP60 686 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 ABCA9Q8IUA7 1624 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 SYT1P21579 422 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 AMPHP49418 695 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 DNM1Q05193 864 aaKnown RBP5.85□□□□□ -1.47
LIMA1-214ENST00000552783 CCDC183Q5T5S1 534 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 RUFY3Q7L099 469 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 INTS4Q96HW7 963 aaKnown RBP5.85□□□□□ -1.47
LIMA1-214ENST00000552783 OSBPL3Q9H4L5 887 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 FRMPD1Q5SYB0 1578 aa5.85□□□□□ -1.47
LIMA1-214ENST00000552783 LMTK2Q8IWU2 1503 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 FGD1P98174 961 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 NCBP1Q09161 790 aaKnown RBP5.84□□□□□ -1.47
LIMA1-214ENST00000552783 CAMK4Q16566 473 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 AK2P54819 239 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 LUZP1Q86V48 1076 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 NUTM1Q86Y26 1132 aa5.84□□□□□ -1.47
LIMA1-214ENST00000552783 NUDT16Q96DE0 195 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms