RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PAPPAQ13219 1627 aa12.51□□□□□ -0.41
LIMA1-211ENST00000552338 DCAF8L1A6NGE4 600 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 RXRBP28702 533 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 DCTN1Q14203 1278 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 MPRIPQ6WCQ1 1025 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 UBR2Q8IWV8 1755 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 CACNA1FO60840 1977 aa12.5□□□□□ -0.41
LIMA1-211ENST00000552338 DOT1LQ8TEK3 1739 aa12.49□□□□□ -0.41
LIMA1-211ENST00000552338 HEG1Q9ULI3 1381 aa12.49□□□□□ -0.41
LIMA1-211ENST00000552338 SOS1Q07889 1333 aaPredicted RBP12.49□□□□□ -0.41
LIMA1-211ENST00000552338 DDX54Q8TDD1 881 aaKnown RBP12.49□□□□□ -0.41
LIMA1-211ENST00000552338 CDCA7LQ96GN5 454 aa12.49□□□□□ -0.41
LIMA1-211ENST00000552338 MYH16Q9H6N6 1097 aa12.49□□□□□ -0.41
LIMA1-211ENST00000552338 SALL2Q9Y467 1007 aaPredicted RBP12.49□□□□□ -0.41
LIMA1-211ENST00000552338 KAT6BQ8WYB5 2073 aa12.49□□□□□ -0.41
LIMA1-211ENST00000552338 ZNF831Q5JPB2 1677 aa12.48□□□□□ -0.41
LIMA1-211ENST00000552338 CT47B1P0C2W7 299 aaPredicted RBP12.48□□□□□ -0.41
LIMA1-211ENST00000552338 YTHDC1Q96MU7 727 aaKnown RBP12.48□□□□□ -0.41
LIMA1-211ENST00000552338 NHSQ6T4R5 1651 aa12.48□□□□□ -0.41
LIMA1-211ENST00000552338 TEFQ10587 303 aa12.47□□□□□ -0.41
LIMA1-211ENST00000552338 THUMPD2Q9BTF0 503 aaKnown RBP12.47□□□□□ -0.41
LIMA1-211ENST00000552338 CICQ96RK0 1608 aaPredicted RBP12.47□□□□□ -0.41
LIMA1-211ENST00000552338 NFATC2IPQ8NCF5 419 aa12.46□□□□□ -0.41
LIMA1-211ENST00000552338 ZNF428Q96B54 188 aa12.46□□□□□ -0.41
LIMA1-211ENST00000552338 MBIPQ9NS73 344 aa12.46□□□□□ -0.41
LIMA1-211ENST00000552338 RGS12O14924 1447 aa12.45□□□□□ -0.42
LIMA1-211ENST00000552338 FANCIQ9NVI1 1328 aa12.45□□□□□ -0.42
LIMA1-211ENST00000552338 HOXB7P09629 217 aa12.45□□□□□ -0.42
LIMA1-211ENST00000552338 KRT27Q7Z3Y8 459 aa12.45□□□□□ -0.42
LIMA1-211ENST00000552338 SENP3-EIF4A1A0A087X0R7 540 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 BTBD11A6QL63 1104 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 CABP4P57796 275 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 ZNF790Q6PG37 636 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 FAM196AQ6ZSG2 479 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 PIGBQ92521 554 aa12.44□□□□□ -0.42
LIMA1-211ENST00000552338 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
LIMA1-211ENST00000552338 EIF4A1P60842 406 aaKnown RBP12.43□□□□□ -0.42
LIMA1-211ENST00000552338 BTAF1O14981 1849 aa12.43□□□□□ -0.42
LIMA1-211ENST00000552338 LY75O60449 1722 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 VAMP4O75379 141 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 VSIG10Q8N0Z9 540 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 TMOD3Q9NYL9 352 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 TSPYL4Q9UJ04 414 aa12.42□□□□□ -0.42
LIMA1-211ENST00000552338 CENPBP07199 599 aaPredicted RBP12.41□□□□□ -0.42
LIMA1-211ENST00000552338 PRIM1P49642 420 aaKnown RBP12.41□□□□□ -0.42
LIMA1-211ENST00000552338 CHMP4AQ9BY43 222 aa12.41□□□□□ -0.42
LIMA1-211ENST00000552338 LAMB4A4D0S4 1761 aa12.41□□□□□ -0.42
LIMA1-211ENST00000552338 RGPD3A6NKT7 1758 aaPredicted RBP12.41□□□□□ -0.42
LIMA1-211ENST00000552338 RGPD4Q7Z3J3 1758 aa12.41□□□□□ -0.42
LIMA1-211ENST00000552338 EXOSC9Q06265 439 aaKnown RBP12.4□□□□□ -0.42
LIMA1-211ENST00000552338 TSR2Q969E8 191 aaKnown RBP12.4□□□□□ -0.42
LIMA1-211ENST00000552338 BCL11BQ9C0K0 894 aaPredicted RBP12.4□□□□□ -0.42
LIMA1-211ENST00000552338 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
LIMA1-211ENST00000552338 KCNQ3O43525 872 aa12.39□□□□□ -0.43
LIMA1-211ENST00000552338 GIGYF1O75420 1035 aaPredicted RBP12.39□□□□□ -0.43
LIMA1-211ENST00000552338 ALDH1L2Q3SY69 923 aa12.39□□□□□ -0.43
LIMA1-211ENST00000552338 C8orf58Q8NAV2 365 aa12.39□□□□□ -0.43
LIMA1-211ENST00000552338 SMARCC1Q92922 1105 aaPredicted RBP12.39□□□□□ -0.43
LIMA1-211ENST00000552338 MIS18AQ9NYP9 233 aa12.39□□□□□ -0.43
LIMA1-211ENST00000552338 LAS1LQ9Y4W2 734 aaKnown RBP12.39□□□□□ -0.43
LIMA1-211ENST00000552338 RNF123Q5XPI4 1314 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 A0A0G2JS52 829 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 MYT1Q01538 1121 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 TWISTNBQ3B726 338 aaPredicted RBP12.38□□□□□ -0.43
LIMA1-211ENST00000552338 TSPYL6Q8N831 410 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 FMNL2Q96PY5 1086 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 C5P01031 1676 aa12.38□□□□□ -0.43
LIMA1-211ENST00000552338 TNS1Q9HBL0 1735 aaKnown RBP12.37□□□□□ -0.43
LIMA1-211ENST00000552338 KCNQ2O43526 872 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 SNRPA1P09661 255 aaKnown RBP12.37□□□□□ -0.43
LIMA1-211ENST00000552338 SLC39A6Q13433 755 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 TTC5Q8N0Z6 440 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
LIMA1-211ENST00000552338 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
LIMA1-211ENST00000552338 ASAP1Q9ULH1 1129 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 TAF1LQ8IZX4 1826 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 COL5A3P25940 1745 aaPredicted RBP12.37□□□□□ -0.43
LIMA1-211ENST00000552338 TJP1Q07157 1748 aa12.37□□□□□ -0.43
LIMA1-211ENST00000552338 RREB1Q92766 1687 aa12.36□□□□□ -0.43
LIMA1-211ENST00000552338 PLSCR1O15162 318 aa12.36□□□□□ -0.43
LIMA1-211ENST00000552338 HMGB2P26583 209 aaKnown RBP12.36□□□□□ -0.43
LIMA1-211ENST00000552338 RARSP54136 660 aaKnown RBP12.36□□□□□ -0.43
LIMA1-211ENST00000552338 CACNB1Q02641 598 aaPredicted RBP12.36□□□□□ -0.43
LIMA1-211ENST00000552338 ERBB4Q15303 1308 aa12.36□□□□□ -0.43
LIMA1-211ENST00000552338 KCNA4P22459 653 aa12.35□□□□□ -0.43
LIMA1-211ENST00000552338 ACSBG1Q96GR2 724 aa12.35□□□□□ -0.43
LIMA1-211ENST00000552338 RCAN3Q9UKA8 241 aa12.35□□□□□ -0.43
LIMA1-211ENST00000552338 KRT24Q2M2I5 525 aa12.34□□□□□ -0.43
LIMA1-211ENST00000552338 SLC4A9Q96Q91 983 aa12.34□□□□□ -0.43
LIMA1-211ENST00000552338 PALLDQ8WX93 1383 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 MYH14Q7Z406 1995 aaKnown RBP12.33□□□□□ -0.44
LIMA1-211ENST00000552338 LOC102724428A0A0B4J2F2 783 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 SIK1P57059 783 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 FAM182BQ5T319 152 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 CCDC30Q5VVM6 783 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 PTF1AQ7RTS3 328 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 USP16Q9Y5T5 823 aa12.33□□□□□ -0.44
LIMA1-211ENST00000552338 PDIA6Q15084 440 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms