RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 FIGNL2A6NMB9 653 aa9.05□□□□□ -0.96
SCAF11-213ENST00000550629 ZNF330Q9Y3S2 320 aaPredicted RBP9.05□□□□□ -0.96
SCAF11-213ENST00000550629 CASKIN1Q8WXD9 1431 aa9.05□□□□□ -0.96
SCAF11-213ENST00000550629 FYCO1Q9BQS8 1478 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 SPINT1O43278 529 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 Q6ZVU0 165 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 SEPT12Q8IYM1 358 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 ZNF784Q8NCA9 323 aaPredicted RBP9.04□□□□□ -0.96
SCAF11-213ENST00000550629 ABCC2Q92887 1545 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 VPS8Q8N3P4 1428 aa9.04□□□□□ -0.96
SCAF11-213ENST00000550629 PLB1Q6P1J6 1458 aa9.03□□□□□ -0.96
SCAF11-213ENST00000550629 RAPGEF6Q8TEU7 1601 aa9.03□□□□□ -0.96
SCAF11-213ENST00000550629 ABL2P42684 1182 aa9.03□□□□□ -0.96
SCAF11-213ENST00000550629 MCCD1P59942 119 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-213ENST00000550629 TMEM151AQ8N4L1 468 aa9.03□□□□□ -0.96
SCAF11-213ENST00000550629 CYB5RLQ6IPT4 315 aa9.02□□□□□ -0.97
SCAF11-213ENST00000550629 CCDC155Q8N6L0 562 aa9.02□□□□□ -0.97
SCAF11-213ENST00000550629 CNTNAP3BQ96NU0 1288 aa9.02□□□□□ -0.97
SCAF11-213ENST00000550629 CNTNAP3Q9BZ76 1288 aa9.02□□□□□ -0.97
SCAF11-213ENST00000550629 ADD1P35611 737 aaKnown RBP9.01□□□□□ -0.97
SCAF11-213ENST00000550629 ZNF592Q92610 1267 aa9.01□□□□□ -0.97
SCAF11-213ENST00000550629 HECW1Q76N89 1606 aa9.01□□□□□ -0.97
SCAF11-213ENST00000550629 ADCY10Q96PN6 1610 aa9.01□□□□□ -0.97
SCAF11-213ENST00000550629 NUP153P49790 1475 aaKnown RBP9.01□□□□□ -0.97
SCAF11-213ENST00000550629 KDM5BQ9UGL1 1544 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 LILRA1O75019 489 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 GDF11O95390 407 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 RELBQ01201 579 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 KRT76Q01546 638 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 VAC14Q08AM6 782 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 AGBL1Q96MI9 1066 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 POLMQ9NP87 494 aaPredicted RBP9□□□□□ -0.97
SCAF11-213ENST00000550629 COG6Q9Y2V7 657 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 CCDC18Q5T9S5 1454 aa9□□□□□ -0.97
SCAF11-213ENST00000550629 PCF11O94913 1555 aaKnown RBP8.99□□□□□ -0.97
SCAF11-213ENST00000550629 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-213ENST00000550629 RNF20Q5VTR2 975 aa8.99□□□□□ -0.97
SCAF11-213ENST00000550629 GPR161Q8N6U8 529 aaKnown RBP8.99□□□□□ -0.97
SCAF11-213ENST00000550629 COL25A1Q9BXS0 654 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-213ENST00000550629 CYLDQ9NQC7 956 aa8.99□□□□□ -0.97
SCAF11-213ENST00000550629 CEP126Q9P2H0 1117 aa8.99□□□□□ -0.97
SCAF11-213ENST00000550629 TTBK1Q5TCY1 1321 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-213ENST00000550629 CDC14CA4D256 554 aa8.98□□□□□ -0.97
SCAF11-213ENST00000550629 RNF225M0QZC1 329 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-213ENST00000550629 CTSOP43234 321 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-213ENST00000550629 EIF4G2P78344 907 aaKnown RBP eCLIP8.98□□□□□ -0.97
SCAF11-213ENST00000550629 RASSF7Q02833 373 aa8.98□□□□□ -0.97
SCAF11-213ENST00000550629 FLIIQ13045 1269 aa8.98□□□□□ -0.97
SCAF11-213ENST00000550629 POM121Q96HA1 1249 aa8.98□□□□□ -0.97
SCAF11-213ENST00000550629 INSM2Q96T92 566 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-213ENST00000550629 EPRSP07814 1512 aaKnown RBP8.98□□□□□ -0.97
SCAF11-213ENST00000550629 MAP3K1Q13233 1512 aa8.98□□□□□ -0.97
SCAF11-213ENST00000550629 NANOS1Q8WY41 292 aaKnown RBP8.97□□□□□ -0.97
SCAF11-213ENST00000550629 ATP10BO94823 1461 aa8.96□□□□□ -0.97
SCAF11-213ENST00000550629 MAPKBP1O60336 1514 aa8.96□□□□□ -0.97
SCAF11-213ENST00000550629 ADH1AP07327 375 aa8.96□□□□□ -0.98
SCAF11-213ENST00000550629 ITGA6P23229 1130 aa8.96□□□□□ -0.98
SCAF11-213ENST00000550629 WASHC4Q2M389 1173 aa8.96□□□□□ -0.98
SCAF11-213ENST00000550629 CCDC125Q86Z20 511 aa8.96□□□□□ -0.98
SCAF11-213ENST00000550629 SVOPQ8N4V2 548 aa8.96□□□□□ -0.98
SCAF11-213ENST00000550629 KDF1Q8NAX2 398 aaPredicted RBP8.96□□□□□ -0.98
SCAF11-213ENST00000550629 ZNF395Q9H8N7 513 aaPredicted RBP8.96□□□□□ -0.98
SCAF11-213ENST00000550629 ZCCHC11Q5TAX3 1644 aaKnown RBP8.95□□□□□ -0.98
SCAF11-213ENST00000550629 SLC35F4A4IF30 521 aa8.95□□□□□ -0.98
SCAF11-213ENST00000550629 CDK11AQ9UQ88 783 aaPredicted RBP8.95□□□□□ -0.98
SCAF11-213ENST00000550629 PCDHB11Q9Y5F2 797 aa8.95□□□□□ -0.98
SCAF11-213ENST00000550629 ERVK-9P63128 1117 aa8.94□□□□□ -0.98
SCAF11-213ENST00000550629 SV2AQ7L0J3 742 aa8.94□□□□□ -0.98
SCAF11-213ENST00000550629 RNF217Q8TC41 542 aa8.94□□□□□ -0.98
SCAF11-213ENST00000550629 KRTAP9-2Q9BYQ4 174 aa8.94□□□□□ -0.98
SCAF11-213ENST00000550629 PTGIRP43119 386 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 SCTRP47872 440 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 RNFT1Q5M7Z0 435 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 CC2D2BQ6DHV5 1058 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 VWA5B2Q8N398 1253 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 TRIM52Q96A61 297 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 CCDC85AQ96PX6 553 aaPredicted RBP8.93□□□□□ -0.98
SCAF11-213ENST00000550629 ADAMTS8Q9UP79 889 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 TIAM1Q13009 1591 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 CFAP43Q8NDM7 1665 aa8.93□□□□□ -0.98
SCAF11-213ENST00000550629 CDK13Q14004 1512 aaKnown RBP8.92□□□□□ -0.98
SCAF11-213ENST00000550629 WDR7Q9Y4E6 1490 aa8.92□□□□□ -0.98
SCAF11-213ENST00000550629 ASXL2Q76L83 1435 aa8.92□□□□□ -0.98
SCAF11-213ENST00000550629 RAD21O60216 631 aa8.92□□□□□ -0.98
SCAF11-213ENST00000550629 TSGA10IPQ3SY00 556 aa8.92□□□□□ -0.98
SCAF11-213ENST00000550629 PHTF2Q8N3S3 785 aa8.92□□□□□ -0.98
SCAF11-213ENST00000550629 CDCA7Q9BWT1 371 aaPredicted RBP8.92□□□□□ -0.98
SCAF11-213ENST00000550629 LRRIQ1Q96JM4 1722 aa8.91□□□□□ -0.98
SCAF11-213ENST00000550629 KRTAP9-6A0A140TA67 174 aa8.91□□□□□ -0.98
SCAF11-213ENST00000550629 PLEKHD1A6NEE1 506 aa8.91□□□□□ -0.98
SCAF11-213ENST00000550629 ATP5J2-PTCD1G3V325 749 aa8.91□□□□□ -0.98
SCAF11-213ENST00000550629 ZNF385CQ66K41 422 aaPredicted RBP8.91□□□□□ -0.98
SCAF11-213ENST00000550629 GPAT2Q6NUI2 795 aa8.91□□□□□ -0.98
SCAF11-213ENST00000550629 TROQ12816 1431 aaPredicted RBP8.9□□□□□ -0.98
SCAF11-213ENST00000550629 SEMA3FQ13275 785 aa8.9□□□□□ -0.98
SCAF11-213ENST00000550629 SLFNL1Q499Z3 407 aa8.9□□□□□ -0.98
SCAF11-213ENST00000550629 LRRC9Q6ZRR7 1453 aa8.89□□□□□ -0.99
SCAF11-213ENST00000550629 RNF135Q8IUD6 432 aa8.89□□□□□ -0.99
SCAF11-213ENST00000550629 OSBPL3Q9H4L5 887 aa8.89□□□□□ -0.99
SCAF11-213ENST00000550629 EHBP1L1Q8N3D4 1523 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms