RNA–Protein interactions for RNA: ENST00000550274.1

LETMD1-222, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 809 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-222ENST00000550274 ITPK1Q13572 414 aa17.41■□□□□ 0.38
LETMD1-222ENST00000550274 EIF4A2Q14240 407 aaKnown RBP17.41■□□□□ 0.38
LETMD1-222ENST00000550274 C4AP0C0L4 1744 aa17.41■□□□□ 0.38
LETMD1-222ENST00000550274 VIRMAQ69YN4 1812 aaKnown RBP17.4■□□□□ 0.38
LETMD1-222ENST00000550274 SSFA2P28290 1259 aa17.4■□□□□ 0.38
LETMD1-222ENST00000550274 TNNT2P45379 298 aaPredicted RBP17.4■□□□□ 0.38
LETMD1-222ENST00000550274 IFNL2Q8IZJ0 200 aa17.4■□□□□ 0.38
LETMD1-222ENST00000550274 POLR3GLQ9BT43 218 aa17.4■□□□□ 0.38
LETMD1-222ENST00000550274 TIMELESSQ9UNS1 1208 aa17.4■□□□□ 0.38
LETMD1-222ENST00000550274 WWC3Q9ULE0 1092 aa17.39■□□□□ 0.37
LETMD1-222ENST00000550274 IGSF1Q8N6C5 1336 aa17.39■□□□□ 0.37
LETMD1-222ENST00000550274 ADCY9O60503 1353 aa17.39■□□□□ 0.37
LETMD1-222ENST00000550274 KDRP35968 1356 aa17.39■□□□□ 0.37
LETMD1-222ENST00000550274 BRCA1P38398 1863 aaKnown RBP17.38■□□□□ 0.37
LETMD1-222ENST00000550274 GNPATO15228 680 aa17.38■□□□□ 0.37
LETMD1-222ENST00000550274 NPM3O75607 178 aaKnown RBP17.38■□□□□ 0.37
LETMD1-222ENST00000550274 ATG3Q9NT62 314 aa17.38■□□□□ 0.37
LETMD1-222ENST00000550274 ATP6V1AP38606 617 aa17.37■□□□□ 0.37
LETMD1-222ENST00000550274 PLEKHG2Q9H7P9 1386 aa17.37■□□□□ 0.37
LETMD1-222ENST00000550274 CICQ96RK0 1608 aaPredicted RBP17.36■□□□□ 0.37
LETMD1-222ENST00000550274 SCN11AQ9UI33 1791 aa17.36■□□□□ 0.37
LETMD1-222ENST00000550274 SLC4A9Q96Q91 983 aa17.35■□□□□ 0.37
LETMD1-222ENST00000550274 KDM6AO15550 1401 aaPredicted RBP17.35■□□□□ 0.37
LETMD1-222ENST00000550274 TJP1Q07157 1748 aa17.34■□□□□ 0.37
LETMD1-222ENST00000550274 CLSPNQ9HAW4 1339 aa17.34■□□□□ 0.37
LETMD1-222ENST00000550274 PXDNLA1KZ92 1463 aa17.33■□□□□ 0.37
LETMD1-222ENST00000550274 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
LETMD1-222ENST00000550274 MMP10P09238 476 aa17.32■□□□□ 0.36
LETMD1-222ENST00000550274 PCGF6Q9BYE7 350 aa17.32■□□□□ 0.36
LETMD1-222ENST00000550274 PANK3Q9H999 370 aa17.32■□□□□ 0.36
LETMD1-222ENST00000550274 ERVV-2B6SEH9 535 aa17.31■□□□□ 0.36
LETMD1-222ENST00000550274 HSPA5P11021 654 aaKnown RBP17.31■□□□□ 0.36
LETMD1-222ENST00000550274 ZNF526Q8TF50 670 aaPredicted RBP17.31■□□□□ 0.36
LETMD1-222ENST00000550274 GPBP1L1Q9HC44 474 aaPredicted RBP17.31■□□□□ 0.36
LETMD1-222ENST00000550274 ARFGEF1Q9Y6D6 1849 aa17.31■□□□□ 0.36
LETMD1-222ENST00000550274 DCAF5Q96JK2 942 aa17.3■□□□□ 0.36
LETMD1-222ENST00000550274 RBM42Q9BTD8 480 aaKnown RBP17.3■□□□□ 0.36
LETMD1-222ENST00000550274 C10orf71Q711Q0 1435 aa17.3■□□□□ 0.36
LETMD1-222ENST00000550274 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
LETMD1-222ENST00000550274 ZNF530Q6P9A1 599 aaPredicted RBP17.29■□□□□ 0.36
LETMD1-222ENST00000550274 AEBP1Q8IUX7 1158 aa17.29■□□□□ 0.36
LETMD1-222ENST00000550274 RTCBQ9Y3I0 505 aaKnown RBP17.29■□□□□ 0.36
LETMD1-222ENST00000550274 ADAMTS7Q9UKP4 1686 aa17.29■□□□□ 0.36
LETMD1-222ENST00000550274 CNTNAP4Q9C0A0 1308 aa17.28■□□□□ 0.36
LETMD1-222ENST00000550274 HSP90AB1P08238 724 aaKnown RBP17.28■□□□□ 0.36
LETMD1-222ENST00000550274 PLEKHO1Q53GL0 409 aaPredicted RBP17.28■□□□□ 0.36
LETMD1-222ENST00000550274 TRAPPC3LQ5T215 181 aa17.28■□□□□ 0.36
LETMD1-222ENST00000550274 RC3H1Q5TC82 1133 aaKnown RBP17.27■□□□□ 0.36
LETMD1-222ENST00000550274 ARHGEF1Q92888 912 aaKnown RBP17.27■□□□□ 0.36
LETMD1-222ENST00000550274 CABP4P57796 275 aa17.26■□□□□ 0.35
LETMD1-222ENST00000550274 AMOTQ4VCS5 1084 aa17.26■□□□□ 0.35
LETMD1-222ENST00000550274 RPS6KA4O75676 772 aa17.25■□□□□ 0.35
LETMD1-222ENST00000550274 GYS1P13807 737 aa17.25■□□□□ 0.35
LETMD1-222ENST00000550274 MORC1Q86VD1 984 aa17.25■□□□□ 0.35
LETMD1-222ENST00000550274 NLGN1Q8N2Q7 840 aa17.25■□□□□ 0.35
LETMD1-222ENST00000550274 A0A0G2JLW4 131 aa17.24■□□□□ 0.35
LETMD1-222ENST00000550274 MTHFSP49914 203 aa17.24■□□□□ 0.35
LETMD1-222ENST00000550274 AFDNP55196 1824 aaKnown RBP17.24■□□□□ 0.35
LETMD1-222ENST00000550274 SBF1O95248 1867 aa17.23■□□□□ 0.35
LETMD1-222ENST00000550274 PTCD1O75127 700 aaKnown RBP17.23■□□□□ 0.35
LETMD1-222ENST00000550274 RFC4P35249 363 aa17.23■□□□□ 0.35
LETMD1-222ENST00000550274 TGFB2P61812 414 aa17.23■□□□□ 0.35
LETMD1-222ENST00000550274 SULT6B1Q6IMI4 303 aa17.23■□□□□ 0.35
LETMD1-222ENST00000550274 NFATC2IPQ8NCF5 419 aa17.23■□□□□ 0.35
LETMD1-222ENST00000550274 KIF3CO14782 793 aa17.22■□□□□ 0.35
LETMD1-222ENST00000550274 C1orf141Q5JVX7 400 aa17.22■□□□□ 0.35
LETMD1-222ENST00000550274 BCS1LQ9Y276 419 aa17.22■□□□□ 0.35
LETMD1-222ENST00000550274 DPEP1P16444 411 aa17.21■□□□□ 0.35
LETMD1-222ENST00000550274 HSPA6P17066 643 aa17.21■□□□□ 0.35
LETMD1-222ENST00000550274 IL13P35225 146 aa17.21■□□□□ 0.35
LETMD1-222ENST00000550274 CRKLP46109 303 aaKnown RBP17.21■□□□□ 0.35
LETMD1-222ENST00000550274 CCDC87Q9NVE4 849 aa17.21■□□□□ 0.35
LETMD1-222ENST00000550274 SRP68Q9UHB9 627 aaKnown RBP17.2■□□□□ 0.34
LETMD1-222ENST00000550274 PARP3Q9Y6F1 533 aa17.2■□□□□ 0.34
LETMD1-222ENST00000550274 UBR2Q8IWV8 1755 aa17.2■□□□□ 0.34
LETMD1-222ENST00000550274 MRC1P22897 1456 aa17.19■□□□□ 0.34
LETMD1-222ENST00000550274 KNSTRNQ9Y448 316 aa17.19■□□□□ 0.34
LETMD1-222ENST00000550274 USP42Q9H9J4 1324 aaKnown RBP17.19■□□□□ 0.34
LETMD1-222ENST00000550274 DLEC1Q9Y238 1755 aa17.18■□□□□ 0.34
LETMD1-222ENST00000550274 KCNA3P22001 575 aa17.18■□□□□ 0.34
LETMD1-222ENST00000550274 DDR1Q08345 913 aa17.18■□□□□ 0.34
LETMD1-222ENST00000550274 FKBP8Q14318 412 aa17.18■□□□□ 0.34
LETMD1-222ENST00000550274 CCDC88AQ3V6T2 1871 aa17.18■□□□□ 0.34
LETMD1-222ENST00000550274 KCPQ6ZWJ8 1503 aa17.17■□□□□ 0.34
LETMD1-222ENST00000550274 FCHSD2O94868 740 aa17.17■□□□□ 0.34
LETMD1-222ENST00000550274 AMER1Q5JTC6 1135 aaPredicted RBP17.17■□□□□ 0.34
LETMD1-222ENST00000550274 ARHGAP27Q6ZUM4 889 aa17.17■□□□□ 0.34
LETMD1-222ENST00000550274 NRXN2Q9P2S2 1712 aa17.17■□□□□ 0.34
LETMD1-222ENST00000550274 INTS5Q6P9B9 1019 aaKnown RBP17.16■□□□□ 0.34
LETMD1-222ENST00000550274 AKAP4Q5JQC9 854 aa17.15■□□□□ 0.34
LETMD1-222ENST00000550274 DNAJC10Q8IXB1 793 aa17.15■□□□□ 0.34
LETMD1-222ENST00000550274 SLC52A2Q9HAB3 445 aa17.15■□□□□ 0.34
LETMD1-222ENST00000550274 LGR6Q9HBX8 967 aa17.15■□□□□ 0.34
LETMD1-222ENST00000550274 SIPA1L3O60292 1781 aaPredicted RBP17.15■□□□□ 0.34
LETMD1-222ENST00000550274 WDR90Q96KV7 1748 aa17.14■□□□□ 0.33
LETMD1-222ENST00000550274 HMOX1P09601 288 aa17.13■□□□□ 0.33
LETMD1-222ENST00000550274 CCER1Q8TC90 406 aaPredicted RBP17.13■□□□□ 0.33
LETMD1-222ENST00000550274 NMRK2Q9NPI5 230 aa17.13■□□□□ 0.33
LETMD1-222ENST00000550274 KIF7Q2M1P5 1343 aa17.13■□□□□ 0.33
LETMD1-222ENST00000550274 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms