RNA–Protein interactions for RNA: ENST00000549686.5

LETMD1-220, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 563 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-220ENST00000549686 SCN11AQ9UI33 1791 aa22.48■■□□□ 1.19
LETMD1-220ENST00000549686 A0A0G2JS52 829 aa22.47■■□□□ 1.19
LETMD1-220ENST00000549686 RBM6P78332 1123 aaKnown RBP22.47■■□□□ 1.19
LETMD1-220ENST00000549686 MYT1Q01538 1121 aa22.47■■□□□ 1.19
LETMD1-220ENST00000549686 NFATC2IPQ8NCF5 419 aa22.45■■□□□ 1.18
LETMD1-220ENST00000549686 CHMP4AQ9BY43 222 aa22.45■■□□□ 1.18
LETMD1-220ENST00000549686 MARCH10Q8NA82 808 aaPredicted RBP22.44■■□□□ 1.18
LETMD1-220ENST00000549686 MIS18AQ9NYP9 233 aa22.44■■□□□ 1.18
LETMD1-220ENST00000549686 TMOD3Q9NYL9 352 aa22.43■■□□□ 1.18
LETMD1-220ENST00000549686 TWISTNBQ3B726 338 aaPredicted RBP22.42■■□□□ 1.18
LETMD1-220ENST00000549686 SEPT12Q8IYM1 358 aa22.42■■□□□ 1.18
LETMD1-220ENST00000549686 BCL9O00512 1426 aa22.41■■□□□ 1.18
LETMD1-220ENST00000549686 HOXB7P09629 217 aa22.41■■□□□ 1.18
LETMD1-220ENST00000549686 ZNF790Q6PG37 636 aa22.41■■□□□ 1.18
LETMD1-220ENST00000549686 SIPA1L3O60292 1781 aaPredicted RBP22.4■■□□□ 1.18
LETMD1-220ENST00000549686 VAMP4O75379 141 aa22.4■■□□□ 1.18
LETMD1-220ENST00000549686 EIF4A1P60842 406 aaKnown RBP22.4■■□□□ 1.18
LETMD1-220ENST00000549686 ALDH1L2Q3SY69 923 aa22.4■■□□□ 1.18
LETMD1-220ENST00000549686 TTC5Q8N0Z6 440 aa22.4■■□□□ 1.18
LETMD1-220ENST00000549686 C8orf58Q8NAV2 365 aa22.4■■□□□ 1.18
LETMD1-220ENST00000549686 RXRBP28702 533 aa22.39■■□□□ 1.17
LETMD1-220ENST00000549686 RARSP54136 660 aaKnown RBP22.39■■□□□ 1.17
LETMD1-220ENST00000549686 KDM3BQ7LBC6 1761 aa22.39■■□□□ 1.17
LETMD1-220ENST00000549686 RNF123Q5XPI4 1314 aa22.38■■□□□ 1.17
LETMD1-220ENST00000549686 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.38■■□□□ 1.17
LETMD1-220ENST00000549686 SUPT16HQ9Y5B9 1047 aaKnown RBP22.38■■□□□ 1.17
LETMD1-220ENST00000549686 VIRMAQ69YN4 1812 aaKnown RBP22.37■■□□□ 1.17
LETMD1-220ENST00000549686 TSPYL6Q8N831 410 aa22.36■■□□□ 1.17
LETMD1-220ENST00000549686 FMNL2Q96PY5 1086 aa22.36■■□□□ 1.17
LETMD1-220ENST00000549686 HEG1Q9ULI3 1381 aa22.36■■□□□ 1.17
LETMD1-220ENST00000549686 TOGARAM1Q9Y4F4 1720 aa22.35■■□□□ 1.17
LETMD1-220ENST00000549686 BRPF1P55201 1214 aaPredicted RBP22.35■■□□□ 1.17
LETMD1-220ENST00000549686 PIGBQ92521 554 aa22.35■■□□□ 1.17
LETMD1-220ENST00000549686 ELL2O00472 640 aaPredicted RBP22.34■■□□□ 1.17
LETMD1-220ENST00000549686 KCNQ3O43525 872 aa22.34■■□□□ 1.17
LETMD1-220ENST00000549686 PRIM1P49642 420 aaKnown RBP22.34■■□□□ 1.17
LETMD1-220ENST00000549686 RRP1P56182 461 aaKnown RBP22.33■■□□□ 1.17
LETMD1-220ENST00000549686 SLC39A6Q13433 755 aa22.33■■□□□ 1.17
LETMD1-220ENST00000549686 SMC4Q9NTJ3 1288 aa22.33■■□□□ 1.17
LETMD1-220ENST00000549686 RGS17Q9UGC6 210 aaPredicted RBP22.33■■□□□ 1.17
LETMD1-220ENST00000549686 GIGYF1O75420 1035 aaPredicted RBP22.32■■□□□ 1.16
LETMD1-220ENST00000549686 NEFLP07196 543 aa22.32■■□□□ 1.16
LETMD1-220ENST00000549686 KRT24Q2M2I5 525 aa22.32■■□□□ 1.16
LETMD1-220ENST00000549686 CCDC30Q5VVM6 783 aa22.32■■□□□ 1.16
LETMD1-220ENST00000549686 KRT27Q7Z3Y8 459 aa22.32■■□□□ 1.16
LETMD1-220ENST00000549686 ILDR1Q86SU0 546 aaPredicted RBP22.32■■□□□ 1.16
LETMD1-220ENST00000549686 SSH1Q8WYL5 1049 aa22.32■■□□□ 1.16
LETMD1-220ENST00000549686 SYTL4Q96C24 671 aaPredicted RBP22.32■■□□□ 1.16
LETMD1-220ENST00000549686 KIF16BQ96L93 1317 aa22.31■■□□□ 1.16
LETMD1-220ENST00000549686 SNRPA1P09661 255 aaKnown RBP22.31■■□□□ 1.16
LETMD1-220ENST00000549686 ZNF496Q96IT1 587 aaPredicted RBP22.3■■□□□ 1.16
LETMD1-220ENST00000549686 PAPPAQ13219 1627 aa22.3■■□□□ 1.16
LETMD1-220ENST00000549686 DOT1LQ8TEK3 1739 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 BCAR3O75815 825 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 FAM196AQ6ZSG2 479 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 VSIG10Q8N0Z9 540 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 SMARCC1Q92922 1105 aaPredicted RBP22.29■■□□□ 1.16
LETMD1-220ENST00000549686 STK31Q9BXU1 1019 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 ATG3Q9NT62 314 aa22.29■■□□□ 1.16
LETMD1-220ENST00000549686 IPO8O15397 1037 aaKnown RBP22.28■■□□□ 1.16
LETMD1-220ENST00000549686 HDGFL1Q5TGJ6 251 aa22.28■■□□□ 1.16
LETMD1-220ENST00000549686 POTEAQ6S8J7 498 aa22.28■■□□□ 1.16
LETMD1-220ENST00000549686 ACSBG1Q96GR2 724 aa22.28■■□□□ 1.16
LETMD1-220ENST00000549686 MRPL50Q8N5N7 158 aaKnown RBP22.27■■□□□ 1.16
LETMD1-220ENST00000549686 TEX13AQ9BXU3 409 aaPredicted RBP22.27■■□□□ 1.16
LETMD1-220ENST00000549686 ASAP1Q9ULH1 1129 aa22.27■■□□□ 1.16
LETMD1-220ENST00000549686 KCPQ6ZWJ8 1503 aa22.26■■□□□ 1.15
LETMD1-220ENST00000549686 MS4A1P11836 297 aa22.26■■□□□ 1.15
LETMD1-220ENST00000549686 CANXP27824 592 aaKnown RBP22.26■■□□□ 1.15
LETMD1-220ENST00000549686 ITGB4P16144 1822 aa22.26■■□□□ 1.15
LETMD1-220ENST00000549686 ARHGAP45Q92619 1136 aa22.25■■□□□ 1.15
LETMD1-220ENST00000549686 BCL2L13Q9BXK5 485 aa22.25■■□□□ 1.15
LETMD1-220ENST00000549686 UBR2Q8IWV8 1755 aa22.25■■□□□ 1.15
LETMD1-220ENST00000549686 RGS12O14924 1447 aa22.24■■□□□ 1.15
LETMD1-220ENST00000549686 ZKSCAN2Q63HK3 967 aa22.24■■□□□ 1.15
LETMD1-220ENST00000549686 ERBB4Q15303 1308 aa22.24■■□□□ 1.15
LETMD1-220ENST00000549686 PTCD1O75127 700 aaKnown RBP22.23■■□□□ 1.15
LETMD1-220ENST00000549686 PDE3AQ14432 1141 aa22.23■■□□□ 1.15
LETMD1-220ENST00000549686 BCL11BQ9C0K0 894 aaPredicted RBP22.23■■□□□ 1.15
LETMD1-220ENST00000549686 DBF4Q9UBU7 674 aaPredicted RBP22.23■■□□□ 1.15
LETMD1-220ENST00000549686 NHSQ6T4R5 1651 aa22.23■■□□□ 1.15
LETMD1-220ENST00000549686 KCNQ2O43526 872 aa22.22■■□□□ 1.15
LETMD1-220ENST00000549686 EIF2S2P20042 333 aaKnown RBP22.22■■□□□ 1.15
LETMD1-220ENST00000549686 FRAT1Q92837 279 aaPredicted RBP22.22■■□□□ 1.15
LETMD1-220ENST00000549686 PTPRCP08575 1304 aa22.22■■□□□ 1.15
LETMD1-220ENST00000549686 SLC4A2P04920 1241 aa22.21■■□□□ 1.15
LETMD1-220ENST00000549686 PALLDQ8WX93 1383 aa22.21■■□□□ 1.15
LETMD1-220ENST00000549686 ATF7IPQ6VMQ6 1270 aa22.2■■□□□ 1.14
LETMD1-220ENST00000549686 RBM42Q9BTD8 480 aaKnown RBP22.2■■□□□ 1.14
LETMD1-220ENST00000549686 API5Q9BZZ5 524 aaKnown RBP22.2■■□□□ 1.14
LETMD1-220ENST00000549686 NOB1Q9ULX3 412 aaKnown RBP22.2■■□□□ 1.14
LETMD1-220ENST00000549686 STARD3NLO95772 234 aa22.19■■□□□ 1.14
LETMD1-220ENST00000549686 FAM182BQ5T319 152 aa22.19■■□□□ 1.14
LETMD1-220ENST00000549686 ERICH6BQ5W0A0 696 aa22.19■■□□□ 1.14
LETMD1-220ENST00000549686 DDX21Q9NR30 783 aaKnown RBP eCLIP22.19■■□□□ 1.14
LETMD1-220ENST00000549686 HYPKQ9NX55 129 aa22.19■■□□□ 1.14
LETMD1-220ENST00000549686 TCERG1O14776 1098 aaKnown RBP22.18■■□□□ 1.14
LETMD1-220ENST00000549686 PLIN1O60240 522 aa22.18■■□□□ 1.14
LETMD1-220ENST00000549686 PRAMEF22A3QJZ6 481 aa22.17■■□□□ 1.14
LETMD1-220ENST00000549686 NECTIN2Q92692 538 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms