RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TNNT2P45379 298 aaPredicted RBP17.66■□□□□ 0.42
PTCH1-218ENST00000548945 ITPK1Q13572 414 aa17.66■□□□□ 0.42
PTCH1-218ENST00000548945 KDRP35968 1356 aa17.66■□□□□ 0.42
PTCH1-218ENST00000548945 HSPA5P11021 654 aaKnown RBP17.65■□□□□ 0.42
PTCH1-218ENST00000548945 DCAF5Q96JK2 942 aa17.65■□□□□ 0.42
PTCH1-218ENST00000548945 PANK3Q9H999 370 aa17.65■□□□□ 0.42
PTCH1-218ENST00000548945 KIF13BQ9NQT8 1826 aa17.65■□□□□ 0.42
PTCH1-218ENST00000548945 COL5A3P25940 1745 aaPredicted RBP17.64■□□□□ 0.41
PTCH1-218ENST00000548945 SENP3-EIF4A1A0A087X0R7 540 aa17.64■□□□□ 0.41
PTCH1-218ENST00000548945 GNPATO15228 680 aa17.64■□□□□ 0.41
PTCH1-218ENST00000548945 AMOTQ4VCS5 1084 aa17.64■□□□□ 0.41
PTCH1-218ENST00000548945 PLEKHO1Q53GL0 409 aaPredicted RBP17.64■□□□□ 0.41
PTCH1-218ENST00000548945 SMIM5Q71RC9 77 aa17.62■□□□□ 0.41
PTCH1-218ENST00000548945 ADRA2BP18089 450 aa17.61■□□□□ 0.41
PTCH1-218ENST00000548945 RC3H1Q5TC82 1133 aaKnown RBP17.61■□□□□ 0.41
PTCH1-218ENST00000548945 ADCY9O60503 1353 aa17.61■□□□□ 0.41
PTCH1-218ENST00000548945 ATP10DQ9P241 1426 aa17.61■□□□□ 0.41
PTCH1-218ENST00000548945 MYH14Q7Z406 1995 aaKnown RBP17.6■□□□□ 0.41
PTCH1-218ENST00000548945 ZNF530Q6P9A1 599 aaPredicted RBP17.6■□□□□ 0.41
PTCH1-218ENST00000548945 MORC1Q86VD1 984 aa17.6■□□□□ 0.41
PTCH1-218ENST00000548945 RTCBQ9Y3I0 505 aaKnown RBP17.6■□□□□ 0.41
PTCH1-218ENST00000548945 KDM6AO15550 1401 aaPredicted RBP17.6■□□□□ 0.41
PTCH1-218ENST00000548945 CNTNAP4Q9C0A0 1308 aa17.59■□□□□ 0.41
PTCH1-218ENST00000548945 TRAPPC3LQ5T215 181 aa17.59■□□□□ 0.41
PTCH1-218ENST00000548945 NLGN1Q8N2Q7 840 aa17.59■□□□□ 0.41
PTCH1-218ENST00000548945 SLC4A9Q96Q91 983 aa17.59■□□□□ 0.41
PTCH1-218ENST00000548945 CICQ96RK0 1608 aaPredicted RBP17.58■□□□□ 0.41
PTCH1-218ENST00000548945 MMP10P09238 476 aa17.58■□□□□ 0.4
PTCH1-218ENST00000548945 SCN11AQ9UI33 1791 aa17.58■□□□□ 0.4
PTCH1-218ENST00000548945 KIAA1551Q9HCM1 1747 aa17.58■□□□□ 0.4
PTCH1-218ENST00000548945 CABP4P57796 275 aa17.57■□□□□ 0.4
PTCH1-218ENST00000548945 C1orf141Q5JVX7 400 aa17.57■□□□□ 0.4
PTCH1-218ENST00000548945 RBM42Q9BTD8 480 aaKnown RBP17.57■□□□□ 0.4
PTCH1-218ENST00000548945 KNSTRNQ9Y448 316 aa17.57■□□□□ 0.4
PTCH1-218ENST00000548945 C4AP0C0L4 1744 aa17.56■□□□□ 0.4
PTCH1-218ENST00000548945 RPS6KA4O75676 772 aa17.56■□□□□ 0.4
PTCH1-218ENST00000548945 MTHFSP49914 203 aa17.56■□□□□ 0.4
PTCH1-218ENST00000548945 GPBP1L1Q9HC44 474 aaPredicted RBP17.56■□□□□ 0.4
PTCH1-218ENST00000548945 TGFB2P61812 414 aa17.55■□□□□ 0.4
PTCH1-218ENST00000548945 AEBP1Q8IUX7 1158 aa17.55■□□□□ 0.4
PTCH1-218ENST00000548945 ARHGEF1Q92888 912 aaKnown RBP17.55■□□□□ 0.4
PTCH1-218ENST00000548945 N4BP2Q86UW6 1770 aaPredicted RBP17.55■□□□□ 0.4
PTCH1-218ENST00000548945 PXDNLA1KZ92 1463 aa17.55■□□□□ 0.4
PTCH1-218ENST00000548945 C10orf71Q711Q0 1435 aa17.55■□□□□ 0.4
PTCH1-218ENST00000548945 BRCA1P38398 1863 aaKnown RBP17.54■□□□□ 0.4
PTCH1-218ENST00000548945 SULT6B1Q6IMI4 303 aa17.54■□□□□ 0.4
PTCH1-218ENST00000548945 VIRMAQ69YN4 1812 aaKnown RBP17.54■□□□□ 0.4
PTCH1-218ENST00000548945 GYS1P13807 737 aa17.53■□□□□ 0.4
PTCH1-218ENST00000548945 IL13P35225 146 aa17.53■□□□□ 0.4
PTCH1-218ENST00000548945 RFC4P35249 363 aa17.53■□□□□ 0.4
PTCH1-218ENST00000548945 CCER1Q8TC90 406 aaPredicted RBP17.53■□□□□ 0.4
PTCH1-218ENST00000548945 TJP1Q07157 1748 aa17.52■□□□□ 0.4
PTCH1-218ENST00000548945 AMER1Q5JTC6 1135 aaPredicted RBP17.52■□□□□ 0.4
PTCH1-218ENST00000548945 NFATC2IPQ8NCF5 419 aa17.52■□□□□ 0.4
PTCH1-218ENST00000548945 CCDC87Q9NVE4 849 aa17.51■□□□□ 0.39
PTCH1-218ENST00000548945 ARFGEF1Q9Y6D6 1849 aa17.5■□□□□ 0.39
PTCH1-218ENST00000548945 PTCD1O75127 700 aaKnown RBP17.5■□□□□ 0.39
PTCH1-218ENST00000548945 CRKLP46109 303 aaKnown RBP17.5■□□□□ 0.39
PTCH1-218ENST00000548945 AKAP4Q5JQC9 854 aa17.5■□□□□ 0.39
PTCH1-218ENST00000548945 WWC3Q9ULE0 1092 aa17.5■□□□□ 0.39
PTCH1-218ENST00000548945 PARP3Q9Y6F1 533 aa17.5■□□□□ 0.39
PTCH1-218ENST00000548945 MRC1P22897 1456 aa17.49■□□□□ 0.39
PTCH1-218ENST00000548945 ADAMTS7Q9UKP4 1686 aa17.48■□□□□ 0.39
PTCH1-218ENST00000548945 A0A0G2JLW4 131 aa17.47■□□□□ 0.39
PTCH1-218ENST00000548945 SLC52A2Q9HAB3 445 aa17.47■□□□□ 0.39
PTCH1-218ENST00000548945 KIF7Q2M1P5 1343 aa17.47■□□□□ 0.39
PTCH1-218ENST00000548945 USP42Q9H9J4 1324 aaKnown RBP17.47■□□□□ 0.39
PTCH1-218ENST00000548945 ZNF526Q8TF50 670 aaPredicted RBP17.46■□□□□ 0.39
PTCH1-218ENST00000548945 BCS1LQ9Y276 419 aa17.46■□□□□ 0.39
PTCH1-218ENST00000548945 DPEP1P16444 411 aa17.45■□□□□ 0.38
PTCH1-218ENST00000548945 PER1O15534 1290 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-218ENST00000548945 HSPA6P17066 643 aa17.44■□□□□ 0.38
PTCH1-218ENST00000548945 INTS5Q6P9B9 1019 aaKnown RBP17.44■□□□□ 0.38
PTCH1-218ENST00000548945 KIF3CO14782 793 aa17.43■□□□□ 0.38
PTCH1-218ENST00000548945 RNMTO43148 476 aaKnown RBP17.43■□□□□ 0.38
PTCH1-218ENST00000548945 FCHSD2O94868 740 aa17.43■□□□□ 0.38
PTCH1-218ENST00000548945 KCNA3P22001 575 aa17.43■□□□□ 0.38
PTCH1-218ENST00000548945 FKBP8Q14318 412 aa17.43■□□□□ 0.38
PTCH1-218ENST00000548945 SRP68Q9UHB9 627 aaKnown RBP17.43■□□□□ 0.38
PTCH1-218ENST00000548945 ARHGAP27Q6ZUM4 889 aa17.42■□□□□ 0.38
PTCH1-218ENST00000548945 LGR6Q9HBX8 967 aa17.42■□□□□ 0.38
PTCH1-218ENST00000548945 PIM2Q9P1W9 311 aa17.42■□□□□ 0.38
PTCH1-218ENST00000548945 UBR2Q8IWV8 1755 aa17.42■□□□□ 0.38
PTCH1-218ENST00000548945 KCPQ6ZWJ8 1503 aa17.42■□□□□ 0.38
PTCH1-218ENST00000548945 NPC1L1Q9UHC9 1359 aa17.41■□□□□ 0.38
PTCH1-218ENST00000548945 DIAPH1O60610 1272 aaKnown RBP17.41■□□□□ 0.38
PTCH1-218ENST00000548945 DDR1Q08345 913 aa17.41■□□□□ 0.38
PTCH1-218ENST00000548945 DNAJC10Q8IXB1 793 aa17.41■□□□□ 0.38
PTCH1-218ENST00000548945 VSIG10Q8N0Z9 540 aa17.41■□□□□ 0.38
PTCH1-218ENST00000548945 SOS1Q07889 1333 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-218ENST00000548945 AFDNP55196 1824 aaKnown RBP17.4■□□□□ 0.38
PTCH1-218ENST00000548945 ZPR1O75312 459 aa17.4■□□□□ 0.38
PTCH1-218ENST00000548945 HMOX1P09601 288 aa17.4■□□□□ 0.38
PTCH1-218ENST00000548945 CYP19A1P11511 503 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-218ENST00000548945 TM4SF1P30408 202 aa17.4■□□□□ 0.38
PTCH1-218ENST00000548945 SBF1O95248 1867 aa17.39■□□□□ 0.38
PTCH1-218ENST00000548945 NRXN2Q9P2S2 1712 aa17.39■□□□□ 0.37
PTCH1-218ENST00000548945 POLRMTO00411 1230 aaKnown RBP17.39■□□□□ 0.37
PTCH1-218ENST00000548945 MTHFSDQ2M296 383 aaKnown RBP17.39■□□□□ 0.37
PTCH1-218ENST00000548945 DALRD3Q5D0E6 543 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms