RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 TTC22Q5TAA0 569 aa17.85■□□□□ 0.45
HOXC11-202ENST00000546378 TCEANC2Q96MN5 208 aa17.85■□□□□ 0.45
HOXC11-202ENST00000546378 NUCB2P80303 420 aa17.84■□□□□ 0.45
HOXC11-202ENST00000546378 VPS37CA5D8V6 355 aaPredicted RBP17.84■□□□□ 0.45
HOXC11-202ENST00000546378 FAM135BQ49AJ0 1406 aa17.83■□□□□ 0.45
HOXC11-202ENST00000546378 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.83■□□□□ 0.45
HOXC11-202ENST00000546378 SNX21Q969T3 373 aa17.83■□□□□ 0.45
HOXC11-202ENST00000546378 USP26Q9BXU7 913 aa17.83■□□□□ 0.45
HOXC11-202ENST00000546378 NAP1L2Q9ULW6 460 aaPredicted RBP17.83■□□□□ 0.44
HOXC11-202ENST00000546378 HCLS1P14317 486 aaPredicted RBP17.83■□□□□ 0.44
HOXC11-202ENST00000546378 KCNJ4P48050 445 aa17.83■□□□□ 0.44
HOXC11-202ENST00000546378 AMPHP49418 695 aa17.83■□□□□ 0.44
HOXC11-202ENST00000546378 TMX3Q96JJ7 454 aa17.83■□□□□ 0.44
HOXC11-202ENST00000546378 ORAI2Q96SN7 254 aa17.83■□□□□ 0.44
HOXC11-202ENST00000546378 CD163L1Q9NR16 1453 aa17.83■□□□□ 0.44
HOXC11-202ENST00000546378 CAMK4Q16566 473 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 PHF23Q9BUL5 403 aaPredicted RBP17.82■□□□□ 0.44
HOXC11-202ENST00000546378 NSD2O96028 1365 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 DRC7Q8IY82 874 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 API5Q9BZZ5 524 aaKnown RBP17.82■□□□□ 0.44
HOXC11-202ENST00000546378 TSPYL4Q9UJ04 414 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 NPHP1O15259 732 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 HSP90AB2PQ58FF8 381 aa17.82■□□□□ 0.44
HOXC11-202ENST00000546378 CIZ1Q9ULV3 898 aaPredicted RBP17.82■□□□□ 0.44
HOXC11-202ENST00000546378 NRXN3Q9Y4C0 1643 aa17.81■□□□□ 0.44
HOXC11-202ENST00000546378 FCHSD2O94868 740 aa17.81■□□□□ 0.44
HOXC11-202ENST00000546378 RTF1Q92541 710 aaKnown RBP17.81■□□□□ 0.44
HOXC11-202ENST00000546378 PHF8Q9UPP1 1060 aa17.81■□□□□ 0.44
HOXC11-202ENST00000546378 SPG7Q9UQ90 795 aa17.81■□□□□ 0.44
HOXC11-202ENST00000546378 AAMPQ13685 434 aa17.8■□□□□ 0.44
HOXC11-202ENST00000546378 FAM173BQ6P4H8 233 aa17.8■□□□□ 0.44
HOXC11-202ENST00000546378 ZNF592Q92610 1267 aa17.8■□□□□ 0.44
HOXC11-202ENST00000546378 REC8O95072 547 aa17.79■□□□□ 0.44
HOXC11-202ENST00000546378 DDX17Q92841 729 aaKnown RBP17.79■□□□□ 0.44
HOXC11-202ENST00000546378 PLEKHG3A1L390 1219 aa17.79■□□□□ 0.44
HOXC11-202ENST00000546378 ERC2O15083 957 aa17.79■□□□□ 0.44
HOXC11-202ENST00000546378 GIMAP6Q6P9H5 292 aa17.79■□□□□ 0.44
HOXC11-202ENST00000546378 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
HOXC11-202ENST00000546378 TPM2P07951 284 aa17.78■□□□□ 0.44
HOXC11-202ENST00000546378 CEBPZQ03701 1054 aaKnown RBP17.78■□□□□ 0.44
HOXC11-202ENST00000546378 USHBP1Q8N6Y0 703 aa17.78■□□□□ 0.44
HOXC11-202ENST00000546378 CNPY2Q9Y2B0 182 aa17.78■□□□□ 0.44
HOXC11-202ENST00000546378 ZDHHC9Q9Y397 364 aa17.78■□□□□ 0.44
HOXC11-202ENST00000546378 CWC27Q6UX04 472 aaKnown RBP17.78■□□□□ 0.44
HOXC11-202ENST00000546378 UNC5CLQ8IV45 518 aa17.78■□□□□ 0.44
HOXC11-202ENST00000546378 KIAA2012Q0VF49 1180 aa17.77■□□□□ 0.44
HOXC11-202ENST00000546378 ARHGAP23Q9P227 1491 aa17.77■□□□□ 0.44
HOXC11-202ENST00000546378 DLC1Q96QB1 1528 aa17.77■□□□□ 0.44
HOXC11-202ENST00000546378 STK3Q13188 491 aa17.77■□□□□ 0.43
HOXC11-202ENST00000546378 EDC4Q6P2E9 1401 aaKnown RBP17.77■□□□□ 0.43
HOXC11-202ENST00000546378 OFD1O75665 1012 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 CEP85Q6P2H3 762 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 TECPR2O15040 1411 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 TSPY26PQ9H489 355 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 SURF6O75683 361 aaKnown RBP17.76■□□□□ 0.43
HOXC11-202ENST00000546378 ALDH1L2Q3SY69 923 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 PDCL3Q9H2J4 239 aa17.76■□□□□ 0.43
HOXC11-202ENST00000546378 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.76■□□□□ 0.43
HOXC11-202ENST00000546378 NPHP4O75161 1426 aaPredicted RBP17.75■□□□□ 0.43
HOXC11-202ENST00000546378 MSH6P52701 1360 aa17.75■□□□□ 0.43
HOXC11-202ENST00000546378 SLIT1O75093 1534 aa17.75■□□□□ 0.43
HOXC11-202ENST00000546378 ATP7BP35670 1465 aa17.75■□□□□ 0.43
HOXC11-202ENST00000546378 ATF3P18847 181 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 USP48Q86UV5 1035 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 STK31Q9BXU1 1019 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 PNMA6EA0A0J9YXQ4 647 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 KDM4AO75164 1064 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 CPS1P31327 1500 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 MCCP23508 829 aa17.74■□□□□ 0.43
HOXC11-202ENST00000546378 CPSF1Q10570 1443 aaKnown RBP17.73■□□□□ 0.43
HOXC11-202ENST00000546378 NECAB1Q8N987 351 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 LRRFIP2Q9Y608 721 aaKnown RBP17.73■□□□□ 0.43
HOXC11-202ENST00000546378 KDM4FA0A1W2PPD8 638 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 CT47B1P0C2W7 299 aaPredicted RBP17.73■□□□□ 0.43
HOXC11-202ENST00000546378 DDIT3P35638 169 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 CKAP2LQ8IYA6 745 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 CHMP4BQ9H444 224 aaKnown RBP17.73■□□□□ 0.43
HOXC11-202ENST00000546378 DCTPP1Q9H773 170 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 CCDC83Q8IWF9 413 aa17.73■□□□□ 0.43
HOXC11-202ENST00000546378 PDE1AP54750 535 aa17.72■□□□□ 0.43
HOXC11-202ENST00000546378 CFAP44Q96MT7 982 aa17.72■□□□□ 0.43
HOXC11-202ENST00000546378 HMMRO75330 724 aa17.72■□□□□ 0.43
HOXC11-202ENST00000546378 MED14O60244 1454 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 EIF4A2Q14240 407 aaKnown RBP17.71■□□□□ 0.43
HOXC11-202ENST00000546378 ZKSCAN5Q9Y2L8 839 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 MAP3K19Q56UN5 1328 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 SETD1BQ9UPS6 1966 aaKnown RBP17.71■□□□□ 0.43
HOXC11-202ENST00000546378 ADCY5O95622 1261 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 LRSAM1Q6UWE0 723 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 IL25Q9H293 177 aa17.71■□□□□ 0.43
HOXC11-202ENST00000546378 TFIP11Q9UBB9 837 aaKnown RBP17.71■□□□□ 0.42
HOXC11-202ENST00000546378 IL13P35225 146 aa17.7■□□□□ 0.42
HOXC11-202ENST00000546378 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.7■□□□□ 0.42
HOXC11-202ENST00000546378 V9GYY5 206 aaPredicted RBP17.7■□□□□ 0.42
HOXC11-202ENST00000546378 A0A087WWV3 80 aa17.69■□□□□ 0.42
HOXC11-202ENST00000546378 IFT57Q9NWB7 429 aa17.69■□□□□ 0.42
HOXC11-202ENST00000546378 SIL1Q9H173 461 aa17.69■□□□□ 0.42
HOXC11-202ENST00000546378 CCDC39Q9UFE4 941 aa17.69■□□□□ 0.42
HOXC11-202ENST00000546378 USP6P35125 1406 aa17.69■□□□□ 0.42
HOXC11-202ENST00000546378 ANKRD44Q8N8A2 993 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms