RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 KAT6BQ8WYB5 2073 aa20.81■□□□□ 0.92
PRPF40A-212ENST00000545856 A0A0G2JS52 829 aa20.8■□□□□ 0.92
PRPF40A-212ENST00000545856 MYT1Q01538 1121 aa20.8■□□□□ 0.92
PRPF40A-212ENST00000545856 CHMP4AQ9BY43 222 aa20.8■□□□□ 0.92
PRPF40A-212ENST00000545856 RGS17Q9UGC6 210 aaPredicted RBP20.8■□□□□ 0.92
PRPF40A-212ENST00000545856 DCTN1Q14203 1278 aa20.79■□□□□ 0.92
PRPF40A-212ENST00000545856 DUSP27Q5VZP5 1158 aa20.79■□□□□ 0.92
PRPF40A-212ENST00000545856 MARCH10Q8NA82 808 aaPredicted RBP20.79■□□□□ 0.92
PRPF40A-212ENST00000545856 LGR6Q9HBX8 967 aa20.79■□□□□ 0.92
PRPF40A-212ENST00000545856 CACNA1FO60840 1977 aa20.78■□□□□ 0.92
PRPF40A-212ENST00000545856 FANCIQ9NVI1 1328 aa20.78■□□□□ 0.92
PRPF40A-212ENST00000545856 ZNF428Q96B54 188 aa20.78■□□□□ 0.92
PRPF40A-212ENST00000545856 CABP4P57796 275 aa20.77■□□□□ 0.92
PRPF40A-212ENST00000545856 THUMPD2Q9BTF0 503 aaKnown RBP20.77■□□□□ 0.92
PRPF40A-212ENST00000545856 RGS12O14924 1447 aa20.77■□□□□ 0.91
PRPF40A-212ENST00000545856 ZNF831Q5JPB2 1677 aa20.77■□□□□ 0.91
PRPF40A-212ENST00000545856 TSPYL4Q9UJ04 414 aa20.76■□□□□ 0.91
PRPF40A-212ENST00000545856 CICQ96RK0 1608 aaPredicted RBP20.76■□□□□ 0.91
PRPF40A-212ENST00000545856 KRT27Q7Z3Y8 459 aa20.75■□□□□ 0.91
PRPF40A-212ENST00000545856 MBIPQ9NS73 344 aa20.75■□□□□ 0.91
PRPF40A-212ENST00000545856 TMOD3Q9NYL9 352 aa20.75■□□□□ 0.91
PRPF40A-212ENST00000545856 BTBD11A6QL63 1104 aa20.74■□□□□ 0.91
PRPF40A-212ENST00000545856 HOXB7P09629 217 aa20.74■□□□□ 0.91
PRPF40A-212ENST00000545856 CDCA7LQ96GN5 454 aa20.74■□□□□ 0.91
PRPF40A-212ENST00000545856 SENP3-EIF4A1A0A087X0R7 540 aa20.73■□□□□ 0.91
PRPF40A-212ENST00000545856 FAM196AQ6ZSG2 479 aa20.73■□□□□ 0.91
PRPF40A-212ENST00000545856 SPINK5Q9NQ38 1064 aaPredicted RBP20.73■□□□□ 0.91
PRPF40A-212ENST00000545856 POTEAQ6S8J7 498 aa20.72■□□□□ 0.91
PRPF40A-212ENST00000545856 NFATC2IPQ8NCF5 419 aa20.72■□□□□ 0.91
PRPF40A-212ENST00000545856 LAMB4A4D0S4 1761 aa20.72■□□□□ 0.91
PRPF40A-212ENST00000545856 TTC5Q8N0Z6 440 aa20.72■□□□□ 0.91
PRPF40A-212ENST00000545856 ZNF790Q6PG37 636 aa20.71■□□□□ 0.91
PRPF40A-212ENST00000545856 LAS1LQ9Y4W2 734 aaKnown RBP20.71■□□□□ 0.91
PRPF40A-212ENST00000545856 HEG1Q9ULI3 1381 aa20.7■□□□□ 0.91
PRPF40A-212ENST00000545856 BTAF1O14981 1849 aa20.7■□□□□ 0.9
PRPF40A-212ENST00000545856 HMGB2P26583 209 aaKnown RBP20.7■□□□□ 0.9
PRPF40A-212ENST00000545856 RGPD3A6NKT7 1758 aaPredicted RBP20.69■□□□□ 0.9
PRPF40A-212ENST00000545856 RGPD4Q7Z3J3 1758 aa20.69■□□□□ 0.9
PRPF40A-212ENST00000545856 SMARCC1Q92922 1105 aaPredicted RBP20.69■□□□□ 0.9
PRPF40A-212ENST00000545856 TSR2Q969E8 191 aaKnown RBP20.69■□□□□ 0.9
PRPF40A-212ENST00000545856 VSIG10Q8N0Z9 540 aa20.68■□□□□ 0.9
PRPF40A-212ENST00000545856 KCPQ6ZWJ8 1503 aa20.68■□□□□ 0.9
PRPF40A-212ENST00000545856 EIF4A1P60842 406 aaKnown RBP20.67■□□□□ 0.9
PRPF40A-212ENST00000545856 PIGBQ92521 554 aa20.67■□□□□ 0.9
PRPF40A-212ENST00000545856 FMNL2Q96PY5 1086 aa20.67■□□□□ 0.9
PRPF40A-212ENST00000545856 LY75O60449 1722 aa20.66■□□□□ 0.9
PRPF40A-212ENST00000545856 PRIM1P49642 420 aaKnown RBP20.66■□□□□ 0.9
PRPF40A-212ENST00000545856 EXOSC9Q06265 439 aaKnown RBP20.66■□□□□ 0.9
PRPF40A-212ENST00000545856 ALDH1L2Q3SY69 923 aa20.65■□□□□ 0.9
PRPF40A-212ENST00000545856 BCL11BQ9C0K0 894 aaPredicted RBP20.65■□□□□ 0.9
PRPF40A-212ENST00000545856 TWISTNBQ3B726 338 aaPredicted RBP20.64■□□□□ 0.89
PRPF40A-212ENST00000545856 TEX13AQ9BXU3 409 aaPredicted RBP20.64■□□□□ 0.89
PRPF40A-212ENST00000545856 C5P01031 1676 aa20.62■□□□□ 0.89
PRPF40A-212ENST00000545856 SYTL4Q96C24 671 aaPredicted RBP20.62■□□□□ 0.89
PRPF40A-212ENST00000545856 ERBB4Q15303 1308 aa20.62■□□□□ 0.89
PRPF40A-212ENST00000545856 SNRPA1P09661 255 aaKnown RBP20.61■□□□□ 0.89
PRPF40A-212ENST00000545856 BRPF1P55201 1214 aaPredicted RBP20.61■□□□□ 0.89
PRPF40A-212ENST00000545856 ATG3Q9NT62 314 aa20.61■□□□□ 0.89
PRPF40A-212ENST00000545856 MIS18AQ9NYP9 233 aa20.61■□□□□ 0.89
PRPF40A-212ENST00000545856 TNS1Q9HBL0 1735 aaKnown RBP20.61■□□□□ 0.89
PRPF40A-212ENST00000545856 VAMP4O75379 141 aa20.6■□□□□ 0.89
PRPF40A-212ENST00000545856 GIGYF1O75420 1035 aaPredicted RBP20.6■□□□□ 0.89
PRPF40A-212ENST00000545856 RCAN3Q9UKA8 241 aa20.6■□□□□ 0.89
PRPF40A-212ENST00000545856 TJP1Q07157 1748 aa20.6■□□□□ 0.89
PRPF40A-212ENST00000545856 C8orf58Q8NAV2 365 aa20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 ACSBG1Q96GR2 724 aa20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 PALLDQ8WX93 1383 aa20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 COL5A3P25940 1745 aaPredicted RBP20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 CCDC30Q5VVM6 783 aa20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 ZNF496Q96IT1 587 aaPredicted RBP20.59■□□□□ 0.89
PRPF40A-212ENST00000545856 SLC39A6Q13433 755 aa20.58■□□□□ 0.88
PRPF40A-212ENST00000545856 EP400Q96L91 3159 aa20.57■□□□□ 0.88
PRPF40A-212ENST00000545856 KIF16BQ96L93 1317 aa20.57■□□□□ 0.88
PRPF40A-212ENST00000545856 RARSP54136 660 aaKnown RBP20.57■□□□□ 0.88
PRPF40A-212ENST00000545856 ASAP1Q9ULH1 1129 aa20.57■□□□□ 0.88
PRPF40A-212ENST00000545856 RREB1Q92766 1687 aa20.56■□□□□ 0.88
PRPF40A-212ENST00000545856 KCNQ3O43525 872 aa20.56■□□□□ 0.88
PRPF40A-212ENST00000545856 KCNQ2O43526 872 aa20.56■□□□□ 0.88
PRPF40A-212ENST00000545856 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.56■□□□□ 0.88
PRPF40A-212ENST00000545856 TAF1LQ8IZX4 1826 aa20.56■□□□□ 0.88
PRPF40A-212ENST00000545856 TSPYL6Q8N831 410 aa20.55■□□□□ 0.88
PRPF40A-212ENST00000545856 STK31Q9BXU1 1019 aa20.55■□□□□ 0.88
PRPF40A-212ENST00000545856 STARD3NLO95772 234 aa20.54■□□□□ 0.88
PRPF40A-212ENST00000545856 HDGFL1Q5TGJ6 251 aa20.54■□□□□ 0.88
PRPF40A-212ENST00000545856 RNF123Q5XPI4 1314 aa20.53■□□□□ 0.88
PRPF40A-212ENST00000545856 LOC102724428A0A0B4J2F2 783 aa20.53■□□□□ 0.88
PRPF40A-212ENST00000545856 PLSCR1O15162 318 aa20.53■□□□□ 0.88
PRPF40A-212ENST00000545856 SIK1P57059 783 aa20.53■□□□□ 0.88
PRPF40A-212ENST00000545856 DBF4Q9UBU7 674 aaPredicted RBP20.53■□□□□ 0.88
PRPF40A-212ENST00000545856 SLC27A3Q5K4L6 730 aa20.52■□□□□ 0.88
PRPF40A-212ENST00000545856 CCDC125Q86Z20 511 aa20.52■□□□□ 0.88
PRPF40A-212ENST00000545856 MS4A1P11836 297 aa20.51■□□□□ 0.87
PRPF40A-212ENST00000545856 KRT24Q2M2I5 525 aa20.51■□□□□ 0.87
PRPF40A-212ENST00000545856 FAM182BQ5T319 152 aa20.51■□□□□ 0.87
PRPF40A-212ENST00000545856 ARHGAP45Q92619 1136 aa20.51■□□□□ 0.87
PRPF40A-212ENST00000545856 SMC4Q9NTJ3 1288 aa20.51■□□□□ 0.87
PRPF40A-212ENST00000545856 ELL2O00472 640 aaPredicted RBP20.5■□□□□ 0.87
PRPF40A-212ENST00000545856 IPO8O15397 1037 aaKnown RBP20.5■□□□□ 0.87
PRPF40A-212ENST00000545856 PTCD1O75127 700 aaKnown RBP20.5■□□□□ 0.87
PRPF40A-212ENST00000545856 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms