RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 MAP3K5Q99683 1374 aa17.76■□□□□ 0.43
TNFRSF1A-215ENST00000543359 UBR3Q6ZT12 1888 aa17.75■□□□□ 0.43
TNFRSF1A-215ENST00000543359 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
TNFRSF1A-215ENST00000543359 SMIM5Q71RC9 77 aa17.74■□□□□ 0.43
TNFRSF1A-215ENST00000543359 ZNF831Q5JPB2 1677 aa17.74■□□□□ 0.43
TNFRSF1A-215ENST00000543359 SCN11AQ9UI33 1791 aa17.74■□□□□ 0.43
TNFRSF1A-215ENST00000543359 ATP6V1AP38606 617 aa17.73■□□□□ 0.43
TNFRSF1A-215ENST00000543359 CABP4P57796 275 aa17.73■□□□□ 0.43
TNFRSF1A-215ENST00000543359 C1orf141Q5JVX7 400 aa17.73■□□□□ 0.43
TNFRSF1A-215ENST00000543359 NFATC2IPQ8NCF5 419 aa17.73■□□□□ 0.43
TNFRSF1A-215ENST00000543359 FLAD1Q8NFF5 587 aa17.73■□□□□ 0.43
TNFRSF1A-215ENST00000543359 AKAP4Q5JQC9 854 aa17.72■□□□□ 0.43
TNFRSF1A-215ENST00000543359 LGR6Q9HBX8 967 aa17.72■□□□□ 0.43
TNFRSF1A-215ENST00000543359 POLD1P28340 1107 aa17.71■□□□□ 0.43
TNFRSF1A-215ENST00000543359 MTHFSDQ2M296 383 aaKnown RBP17.71■□□□□ 0.43
TNFRSF1A-215ENST00000543359 AK7Q96M32 723 aa17.71■□□□□ 0.43
TNFRSF1A-215ENST00000543359 ADAMTS7Q9UKP4 1686 aa17.71■□□□□ 0.42
TNFRSF1A-215ENST00000543359 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.7■□□□□ 0.42
TNFRSF1A-215ENST00000543359 MSH5O43196 834 aa17.7■□□□□ 0.42
TNFRSF1A-215ENST00000543359 SSFA2P28290 1259 aa17.69■□□□□ 0.42
TNFRSF1A-215ENST00000543359 PPP2R1AP30153 589 aa17.69■□□□□ 0.42
TNFRSF1A-215ENST00000543359 MSL1Q68DK7 614 aa17.69■□□□□ 0.42
TNFRSF1A-215ENST00000543359 COL5A3P25940 1745 aaPredicted RBP17.69■□□□□ 0.42
TNFRSF1A-215ENST00000543359 MYH14Q7Z406 1995 aaKnown RBP17.68■□□□□ 0.42
TNFRSF1A-215ENST00000543359 RNMTO43148 476 aaKnown RBP17.68■□□□□ 0.42
TNFRSF1A-215ENST00000543359 RC3H1Q5TC82 1133 aaKnown RBP17.68■□□□□ 0.42
TNFRSF1A-215ENST00000543359 MRC1P22897 1456 aa17.68■□□□□ 0.42
TNFRSF1A-215ENST00000543359 VIRMAQ69YN4 1812 aaKnown RBP17.68■□□□□ 0.42
TNFRSF1A-215ENST00000543359 RBM42Q9BTD8 480 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-215ENST00000543359 SLC52A2Q9HAB3 445 aa17.67■□□□□ 0.42
TNFRSF1A-215ENST00000543359 U2SURPO15042 1029 aaKnown RBP17.66■□□□□ 0.42
TNFRSF1A-215ENST00000543359 GNPATO15228 680 aa17.66■□□□□ 0.42
TNFRSF1A-215ENST00000543359 PHF14O94880 888 aa17.66■□□□□ 0.42
TNFRSF1A-215ENST00000543359 PTCD1O75127 700 aaKnown RBP17.65■□□□□ 0.42
TNFRSF1A-215ENST00000543359 NLGN2Q8NFZ4 835 aa17.65■□□□□ 0.42
TNFRSF1A-215ENST00000543359 CNTNAP4Q9C0A0 1308 aa17.65■□□□□ 0.42
TNFRSF1A-215ENST00000543359 CICQ96RK0 1608 aaPredicted RBP17.65■□□□□ 0.42
TNFRSF1A-215ENST00000543359 DCAF8L1A6NGE4 600 aa17.64■□□□□ 0.41
TNFRSF1A-215ENST00000543359 PHACTR3Q96KR7 559 aa17.64■□□□□ 0.41
TNFRSF1A-215ENST00000543359 RSPH6AQ9H0K4 717 aa17.64■□□□□ 0.41
TNFRSF1A-215ENST00000543359 TJP1Q07157 1748 aa17.64■□□□□ 0.41
TNFRSF1A-215ENST00000543359 RPS6KA4O75676 772 aa17.62■□□□□ 0.41
TNFRSF1A-215ENST00000543359 SLC39A6Q13433 755 aa17.62■□□□□ 0.41
TNFRSF1A-215ENST00000543359 IL17REQ8NFR9 667 aa17.62■□□□□ 0.41
TNFRSF1A-215ENST00000543359 CFAP53Q96M91 514 aa17.62■□□□□ 0.41
TNFRSF1A-215ENST00000543359 RTCBQ9Y3I0 505 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-215ENST00000543359 TRAPPC3LQ5T215 181 aa17.61■□□□□ 0.41
TNFRSF1A-215ENST00000543359 KLHL34Q8N239 644 aa17.61■□□□□ 0.41
TNFRSF1A-215ENST00000543359 ARHGEF1Q92888 912 aaKnown RBP17.61■□□□□ 0.41
TNFRSF1A-215ENST00000543359 CD2APQ9Y5K6 639 aa17.61■□□□□ 0.41
TNFRSF1A-215ENST00000543359 KCPQ6ZWJ8 1503 aa17.61■□□□□ 0.41
TNFRSF1A-215ENST00000543359 ADRA2BP18089 450 aa17.6■□□□□ 0.41
TNFRSF1A-215ENST00000543359 YY1P25490 414 aa17.6■□□□□ 0.41
TNFRSF1A-215ENST00000543359 PRKAR2BP31323 418 aa17.6■□□□□ 0.41
TNFRSF1A-215ENST00000543359 INTS5Q6P9B9 1019 aaKnown RBP17.6■□□□□ 0.41
TNFRSF1A-215ENST00000543359 GAS2L2Q8NHY3 880 aa17.6■□□□□ 0.41
TNFRSF1A-215ENST00000543359 GNAT3A8MTJ3 354 aa17.59■□□□□ 0.41
TNFRSF1A-215ENST00000543359 CRKLP46109 303 aaKnown RBP17.59■□□□□ 0.41
TNFRSF1A-215ENST00000543359 DNAJC10Q8IXB1 793 aa17.59■□□□□ 0.41
TNFRSF1A-215ENST00000543359 SIPA1L3O60292 1781 aaPredicted RBP17.58■□□□□ 0.41
TNFRSF1A-215ENST00000543359 UBR2Q8IWV8 1755 aa17.58■□□□□ 0.41
TNFRSF1A-215ENST00000543359 CEMIPQ8WUJ3 1361 aa17.58■□□□□ 0.4
TNFRSF1A-215ENST00000543359 NUDCQ9Y266 331 aa17.58■□□□□ 0.4
TNFRSF1A-215ENST00000543359 FCHSD2O94868 740 aa17.57■□□□□ 0.4
TNFRSF1A-215ENST00000543359 U2AF1L5P0DN76 240 aaPredicted RBP17.57■□□□□ 0.4
TNFRSF1A-215ENST00000543359 U2AF1Q01081 240 aaKnown RBP eCLIP17.57■□□□□ 0.4
TNFRSF1A-215ENST00000543359 C4AP0C0L4 1744 aa17.57■□□□□ 0.4
TNFRSF1A-215ENST00000543359 CYP19A1P11511 503 aaPredicted RBP17.56■□□□□ 0.4
TNFRSF1A-215ENST00000543359 GYS1P13807 737 aa17.56■□□□□ 0.4
TNFRSF1A-215ENST00000543359 CHD4Q14839 1912 aa17.56■□□□□ 0.4
TNFRSF1A-215ENST00000543359 MMP10P09238 476 aa17.55■□□□□ 0.4
TNFRSF1A-215ENST00000543359 YBX3P16989 372 aaKnown RBP eCLIP17.55■□□□□ 0.4
TNFRSF1A-215ENST00000543359 GPR162Q16538 588 aa17.55■□□□□ 0.4
TNFRSF1A-215ENST00000543359 VSIG10Q8N0Z9 540 aa17.55■□□□□ 0.4
TNFRSF1A-215ENST00000543359 NLGN1Q8N2Q7 840 aa17.55■□□□□ 0.4
TNFRSF1A-215ENST00000543359 RFC4P35249 363 aa17.54■□□□□ 0.4
TNFRSF1A-215ENST00000543359 SOS1Q07889 1333 aaPredicted RBP17.53■□□□□ 0.4
TNFRSF1A-215ENST00000543359 ZNF790Q6PG37 636 aa17.53■□□□□ 0.4
TNFRSF1A-215ENST00000543359 ZNF496Q96IT1 587 aaPredicted RBP17.53■□□□□ 0.4
TNFRSF1A-215ENST00000543359 CCDC87Q9NVE4 849 aa17.53■□□□□ 0.4
TNFRSF1A-215ENST00000543359 SRP68Q9UHB9 627 aaKnown RBP17.53■□□□□ 0.4
TNFRSF1A-215ENST00000543359 USP42Q9H9J4 1324 aaKnown RBP17.52■□□□□ 0.4
TNFRSF1A-215ENST00000543359 TEFQ10587 303 aa17.52■□□□□ 0.4
TNFRSF1A-215ENST00000543359 KIF13BQ9NQT8 1826 aa17.51■□□□□ 0.39
TNFRSF1A-215ENST00000543359 KCNQ3O43525 872 aa17.51■□□□□ 0.39
TNFRSF1A-215ENST00000543359 DDX10Q13206 875 aaKnown RBP17.51■□□□□ 0.39
TNFRSF1A-215ENST00000543359 ZBTB1Q9Y2K1 713 aa17.51■□□□□ 0.39
TNFRSF1A-215ENST00000543359 KIAA1551Q9HCM1 1747 aa17.5■□□□□ 0.39
TNFRSF1A-215ENST00000543359 FKBP8Q14318 412 aa17.5■□□□□ 0.39
TNFRSF1A-215ENST00000543359 PLEKHF1Q96S99 279 aa17.5■□□□□ 0.39
TNFRSF1A-215ENST00000543359 HEG1Q9ULI3 1381 aa17.5■□□□□ 0.39
TNFRSF1A-215ENST00000543359 RALBP1Q15311 655 aa17.49■□□□□ 0.39
TNFRSF1A-215ENST00000543359 MCM10Q7L590 875 aa17.49■□□□□ 0.39
TNFRSF1A-215ENST00000543359 PELP1Q8IZL8 1130 aaKnown RBP17.49■□□□□ 0.39
TNFRSF1A-215ENST00000543359 TTC5Q8N0Z6 440 aa17.49■□□□□ 0.39
TNFRSF1A-215ENST00000543359 C10orf71Q711Q0 1435 aa17.48■□□□□ 0.39
TNFRSF1A-215ENST00000543359 HTATSF1O43719 755 aaKnown RBP17.48■□□□□ 0.39
TNFRSF1A-215ENST00000543359 TM4SF1P30408 202 aa17.48■□□□□ 0.39
TNFRSF1A-215ENST00000543359 DDR1Q08345 913 aa17.48■□□□□ 0.39
TNFRSF1A-215ENST00000543359 BTBD11A6QL63 1104 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms