RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-221	ENST00000543162	BTBD11	A6QL63	1104 aa		13.8	□□□□□ -0.2
DDB1-221	ENST00000543162	CT47B1	P0C2W7	299 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-221	ENST00000543162	NFATC2IP	Q8NCF5	419 aa		13.8	□□□□□ -0.2
DDB1-221	ENST00000543162	SIPA1L3	O60292	1781 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-221	ENST00000543162	ONECUT3	O60422	494 aa	Predicted RBP	13.79	□□□□□ -0.2
DDB1-221	ENST00000543162	MARCH10	Q8NA82	808 aa	Predicted RBP	13.79	□□□□□ -0.2
DDB1-221	ENST00000543162	C8orf58	Q8NAV2	365 aa		13.78	□□□□□ -0.2
DDB1-221	ENST00000543162	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.78	□□□□□ -0.2
DDB1-221	ENST00000543162	KDM3B	Q7LBC6	1761 aa		13.78	□□□□□ -0.2
DDB1-221	ENST00000543162	RBM6	P78332	1123 aa	Known RBP	13.77	□□□□□ -0.21
DDB1-221	ENST00000543162	TWISTNB	Q3B726	338 aa	Predicted RBP	13.77	□□□□□ -0.21
DDB1-221	ENST00000543162	SEPT12	Q8IYM1	358 aa		13.77	□□□□□ -0.21
DDB1-221	ENST00000543162	TMOD3	Q9NYL9	352 aa		13.77	□□□□□ -0.21
DDB1-221	ENST00000543162	TOGARAM1	Q9Y4F4	1720 aa		13.77	□□□□□ -0.21
DDB1-221	ENST00000543162	ELL2	O00472	640 aa	Predicted RBP	13.76	□□□□□ -0.21
DDB1-221	ENST00000543162	TSPYL6	Q8N831	410 aa		13.76	□□□□□ -0.21
DDB1-221	ENST00000543162	KAT6B	Q8WYB5	2073 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	KCNQ3	O43525	872 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	VAMP4	O75379	141 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	RARS	P54136	660 aa	Known RBP	13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	EIF4A1	P60842	406 aa	Known RBP	13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	KRT24	Q2M2I5	525 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	ZNF790	Q6PG37	636 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	TTC5	Q8N0Z6	440 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	ZNF428	Q96B54	188 aa		13.75	□□□□□ -0.21
DDB1-221	ENST00000543162	SOS1	Q07889	1333 aa	Predicted RBP	13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	DOT1L	Q8TEK3	1739 aa		13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	RXRB	P28702	533 aa		13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	PRIM1	P49642	420 aa	Known RBP	13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	SLC39A6	Q13433	755 aa		13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	SYTL4	Q96C24	671 aa	Predicted RBP	13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	ITGB4	P16144	1822 aa		13.74	□□□□□ -0.21
DDB1-221	ENST00000543162	ILDR1	Q86SU0	546 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-221	ENST00000543162	PIGB	Q92521	554 aa		13.73	□□□□□ -0.21
DDB1-221	ENST00000543162	BCL9	O00512	1426 aa		13.73	□□□□□ -0.21
DDB1-221	ENST00000543162	BCAR3	O75815	825 aa		13.72	□□□□□ -0.21
DDB1-221	ENST00000543162	ALDH1L2	Q3SY69	923 aa		13.72	□□□□□ -0.21
DDB1-221	ENST00000543162	ACSBG1	Q96GR2	724 aa		13.72	□□□□□ -0.21
DDB1-221	ENST00000543162	SMC4	Q9NTJ3	1288 aa		13.72	□□□□□ -0.21
DDB1-221	ENST00000543162	RGS17	Q9UGC6	210 aa	Predicted RBP	13.72	□□□□□ -0.21
DDB1-221	ENST00000543162	RNF123	Q5XPI4	1314 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	NEFL	P07196	543 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	HOXB7	P09629	217 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	RRP1	P56182	461 aa	Known RBP	13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	SSH1	Q8WYL5	1049 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	FMNL2	Q96PY5	1086 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	BCL2L13	Q9BXK5	485 aa		13.71	□□□□□ -0.21
DDB1-221	ENST00000543162	PAPPA	Q13219	1627 aa		13.71	□□□□□ -0.22
DDB1-221	ENST00000543162	HEG1	Q9ULI3	1381 aa		13.71	□□□□□ -0.22
DDB1-221	ENST00000543162	GIGYF1	O75420	1035 aa	Predicted RBP	13.7	□□□□□ -0.22
DDB1-221	ENST00000543162	POTEA	Q6S8J7	498 aa		13.7	□□□□□ -0.22
DDB1-221	ENST00000543162	KRT27	Q7Z3Y8	459 aa		13.7	□□□□□ -0.22
DDB1-221	ENST00000543162	ZNF496	Q96IT1	587 aa	Predicted RBP	13.7	□□□□□ -0.22
DDB1-221	ENST00000543162	CHMP4A	Q9BY43	222 aa		13.7	□□□□□ -0.22
DDB1-221	ENST00000543162	BRWD3	Q6RI45	1802 aa		13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	TCERG1	O14776	1098 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	FAM182B	Q5T319	152 aa		13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	CCDC30	Q5VVM6	783 aa		13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	ATG3	Q9NT62	314 aa		13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	ASAP1	Q9ULH1	1129 aa		13.69	□□□□□ -0.22
DDB1-221	ENST00000543162	UBR2	Q8IWV8	1755 aa		13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	KCNQ2	O43526	872 aa		13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	PTCD1	O75127	700 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	SNRPA1	P09661	255 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	CANX	P27824	592 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	HDGFL1	Q5TGJ6	251 aa		13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	FRAT1	Q92837	279 aa	Predicted RBP	13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	STK31	Q9BXU1	1019 aa		13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	KCP	Q6ZWJ8	1503 aa		13.68	□□□□□ -0.22
DDB1-221	ENST00000543162	KIF16B	Q96L93	1317 aa		13.67	□□□□□ -0.22
DDB1-221	ENST00000543162	PLIN1	O60240	522 aa		13.67	□□□□□ -0.22
DDB1-221	ENST00000543162	EIF2S2	P20042	333 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-221	ENST00000543162	MRPL50	Q8N5N7	158 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-221	ENST00000543162	NECTIN2	Q92692	538 aa		13.67	□□□□□ -0.22
DDB1-221	ENST00000543162	NHS	Q6T4R5	1651 aa		13.66	□□□□□ -0.22
DDB1-221	ENST00000543162	RGS12	O14924	1447 aa		13.66	□□□□□ -0.22
DDB1-221	ENST00000543162	PRAMEF22	A3QJZ6	481 aa		13.66	□□□□□ -0.22
DDB1-221	ENST00000543162	BRPF1	P55201	1214 aa	Predicted RBP	13.66	□□□□□ -0.22
DDB1-221	ENST00000543162	FAM196A	Q6ZSG2	479 aa		13.66	□□□□□ -0.22
DDB1-221	ENST00000543162	IPO8	O15397	1037 aa	Known RBP	13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	SLC4A2	P04920	1241 aa		13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	IRX6	P78412	446 aa	Predicted RBP	13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	SMARCC1	Q92922	1105 aa	Predicted RBP	13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	RBM42	Q9BTD8	480 aa	Known RBP	13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	NOB1	Q9ULX3	412 aa	Known RBP	13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	C5	P01031	1676 aa		13.65	□□□□□ -0.22
DDB1-221	ENST00000543162	SBF2	Q86WG5	1849 aa		13.64	□□□□□ -0.23
DDB1-221	ENST00000543162	ZKSCAN2	Q63HK3	967 aa		13.64	□□□□□ -0.23
DDB1-221	ENST00000543162	VSIG10	Q8N0Z9	540 aa		13.64	□□□□□ -0.23
DDB1-221	ENST00000543162	PALLD	Q8WX93	1383 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	FKBP8	Q14318	412 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	CHPF2	Q9P2E5	772 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	DBF4	Q9UBU7	674 aa	Predicted RBP	13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	USP16	Q9Y5T5	823 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	CACNA1F	O60840	1977 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	LAMB4	A4D0S4	1761 aa		13.63	□□□□□ -0.23
DDB1-221	ENST00000543162	BTAF1	O14981	1849 aa		13.62	□□□□□ -0.23
DDB1-221	ENST00000543162	MS4A1	P11836	297 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms