RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 LINC00116Q8NCU8 138 aa11.37□□□□□ -0.59
CHMP4A-209ENST00000542700 ZCRB1Q8TBF4 217 aaKnown RBP11.37□□□□□ -0.59
CHMP4A-209ENST00000542700 ZNF219Q9P2Y4 722 aaPredicted RBP11.37□□□□□ -0.59
CHMP4A-209ENST00000542700 RASSF10A6NK89 507 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 CHRNA5P30532 468 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 TMF1P82094 1093 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 DEFB115Q30KQ5 88 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 MPRIPQ6WCQ1 1025 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 MPHOSPH9Q99550 1183 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 PARP3Q9Y6F1 533 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 LTN1O94822 1766 aa11.36□□□□□ -0.59
CHMP4A-209ENST00000542700 MEGF6O75095 1541 aa11.35□□□□□ -0.59
CHMP4A-209ENST00000542700 DPY19L2Q6NUT2 758 aa11.35□□□□□ -0.59
CHMP4A-209ENST00000542700 NLGN1Q8N2Q7 840 aa11.35□□□□□ -0.59
CHMP4A-209ENST00000542700 LTV1Q96GA3 475 aaPredicted RBP11.35□□□□□ -0.59
CHMP4A-209ENST00000542700 DLL1O00548 723 aa11.34□□□□□ -0.59
CHMP4A-209ENST00000542700 GCC1Q96CN9 775 aa11.34□□□□□ -0.59
CHMP4A-209ENST00000542700 LTBP1Q14766 1721 aa11.34□□□□□ -0.59
CHMP4A-209ENST00000542700 THSD7BQ9C0I4 1608 aa11.34□□□□□ -0.59
CHMP4A-209ENST00000542700 TTC21AQ8NDW8 1320 aa11.34□□□□□ -0.59
CHMP4A-209ENST00000542700 GRM1Q13255 1194 aa11.33□□□□□ -0.6
CHMP4A-209ENST00000542700 HABP4Q5JVS0 413 aaKnown RBP11.33□□□□□ -0.6
CHMP4A-209ENST00000542700 PAXIP1Q6ZW49 1069 aaPredicted RBP11.33□□□□□ -0.6
CHMP4A-209ENST00000542700 SMARCC1Q92922 1105 aaPredicted RBP11.33□□□□□ -0.6
CHMP4A-209ENST00000542700 ABT1Q9ULW3 272 aaKnown RBP11.33□□□□□ -0.6
CHMP4A-209ENST00000542700 LDHDQ86WU2 507 aa11.32□□□□□ -0.6
CHMP4A-209ENST00000542700 DCAF11Q8TEB1 546 aa11.32□□□□□ -0.6
CHMP4A-209ENST00000542700 FAM208AQ9UK61 1670 aaKnown RBP11.32□□□□□ -0.6
CHMP4A-209ENST00000542700 ITGBL1O95965 494 aaPredicted RBP11.31□□□□□ -0.6
CHMP4A-209ENST00000542700 LOC102724428A0A0B4J2F2 783 aa11.3□□□□□ -0.6
CHMP4A-209ENST00000542700 GYS1P13807 737 aa11.3□□□□□ -0.6
CHMP4A-209ENST00000542700 SIK1P57059 783 aa11.3□□□□□ -0.6
CHMP4A-209ENST00000542700 ITPK1Q13572 414 aa11.3□□□□□ -0.6
CHMP4A-209ENST00000542700 CAPNS2Q96L46 248 aa11.3□□□□□ -0.6
CHMP4A-209ENST00000542700 CASP8AP2Q9UKL3 1982 aa11.29□□□□□ -0.6
CHMP4A-209ENST00000542700 NFKBIEO00221 500 aa11.29□□□□□ -0.6
CHMP4A-209ENST00000542700 DDNO94850 711 aaPredicted RBP11.29□□□□□ -0.6
CHMP4A-209ENST00000542700 TRAPPC3LQ5T215 181 aa11.29□□□□□ -0.6
CHMP4A-209ENST00000542700 CCDC88AQ3V6T2 1871 aa11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 EAPPQ56P03 285 aaPredicted RBP11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 GPR101Q96P66 508 aaPredicted RBP11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 ZNF692Q9BU19 519 aaPredicted RBP11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 RTCBQ9Y3I0 505 aaKnown RBP11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 MAP2P11137 1827 aaKnown RBP11.28□□□□□ -0.6
CHMP4A-209ENST00000542700 NBPF1Q3BBV0 1214 aa11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 ERFEQ4G0M1 354 aa11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 CYP4F22Q6NT55 531 aa11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 PPARGC1BQ86YN6 1023 aaKnown RBP11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 NBPF15Q8N660 670 aa11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 ARHGEF1Q92888 912 aaKnown RBP11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 CENPJQ9HC77 1338 aaPredicted RBP11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 KTN1Q86UP2 1357 aaKnown RBP11.27□□□□□ -0.61
CHMP4A-209ENST00000542700 IQCA1LA6NCM1 817 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 RFC4P35249 363 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 ATP6V1AP38606 617 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 ECE1P42892 770 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 DDR1Q08345 913 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 NME9Q86XW9 330 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 PIGBQ92521 554 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 TAF1DQ9H5J8 278 aaPredicted RBP11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 CLEC11AQ9Y240 323 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 USP31Q70CQ4 1352 aa11.26□□□□□ -0.61
CHMP4A-209ENST00000542700 FXR1P51114 621 aaKnown RBP eCLIP11.25□□□□□ -0.61
CHMP4A-209ENST00000542700 IP6K1Q92551 441 aa11.25□□□□□ -0.61
CHMP4A-209ENST00000542700 PCDH11XQ9BZA7 1347 aa11.25□□□□□ -0.61
CHMP4A-209ENST00000542700 PCDH11YQ9BZA8 1340 aa11.25□□□□□ -0.61
CHMP4A-209ENST00000542700 ITGB4P16144 1822 aa11.25□□□□□ -0.61
CHMP4A-209ENST00000542700 RGPD2P0DJD1 1756 aa11.24□□□□□ -0.61
CHMP4A-209ENST00000542700 CA12O43570 354 aa11.24□□□□□ -0.61
CHMP4A-209ENST00000542700 AOC2O75106 756 aa11.24□□□□□ -0.61
CHMP4A-209ENST00000542700 MAP1SQ66K74 1059 aaPredicted RBP11.24□□□□□ -0.61
CHMP4A-209ENST00000542700 USHBP1Q8N6Y0 703 aa11.24□□□□□ -0.61
CHMP4A-209ENST00000542700 ADRA2BP18089 450 aa11.23□□□□□ -0.61
CHMP4A-209ENST00000542700 CNTROBQ8N137 903 aa11.23□□□□□ -0.61
CHMP4A-209ENST00000542700 RAPGEF4Q8WZA2 1011 aa11.23□□□□□ -0.61
CHMP4A-209ENST00000542700 CGNL1Q0VF96 1302 aa11.22□□□□□ -0.61
CHMP4A-209ENST00000542700 CD163L1Q9NR16 1453 aa11.21□□□□□ -0.61
CHMP4A-209ENST00000542700 FKBP8Q14318 412 aa11.21□□□□□ -0.61
CHMP4A-209ENST00000542700 TTLL6Q8N841 843 aa11.21□□□□□ -0.61
CHMP4A-209ENST00000542700 SRP68Q9UHB9 627 aaKnown RBP11.21□□□□□ -0.61
CHMP4A-209ENST00000542700 ASAP1Q9ULH1 1129 aa11.21□□□□□ -0.61
CHMP4A-209ENST00000542700 ADAMTSL1Q8N6G6 1762 aa11.21□□□□□ -0.62
CHMP4A-209ENST00000542700 MON2Q7Z3U7 1717 aa11.21□□□□□ -0.62
CHMP4A-209ENST00000542700 CYP27B1O15528 508 aa11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 MAP2K2P36507 400 aa11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 SLC17A8Q8NDX2 589 aa11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 L3MBTL3Q96JM7 780 aaPredicted RBP11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 DDX21Q9NR30 783 aaKnown RBP eCLIP11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 SCN4AP35499 1836 aa11.2□□□□□ -0.62
CHMP4A-209ENST00000542700 DICER1Q9UPY3 1922 aaKnown RBP11.19□□□□□ -0.62
CHMP4A-209ENST00000542700 EVC2Q86UK5 1308 aa11.19□□□□□ -0.62
CHMP4A-209ENST00000542700 POLRMTO00411 1230 aaKnown RBP11.19□□□□□ -0.62
CHMP4A-209ENST00000542700 FMR1Q06787 632 aaKnown RBP eCLIP11.19□□□□□ -0.62
CHMP4A-209ENST00000542700 STAC3Q96MF2 364 aa11.19□□□□□ -0.62
CHMP4A-209ENST00000542700 DLEC1Q9Y238 1755 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 ADAMTS7Q9UKP4 1686 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 HOXC9P31274 260 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 EPHX2P34913 555 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms