RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ITPK1Q13572 414 aa13.02□□□□□ -0.33
YBX3-212ENST00000542002 CNKSR2Q8WXI2 1034 aa13.02□□□□□ -0.33
YBX3-212ENST00000542002 SMARCC1Q92922 1105 aaPredicted RBP13.02□□□□□ -0.33
YBX3-212ENST00000542002 PLEKHF1Q96S99 279 aa13.02□□□□□ -0.33
YBX3-212ENST00000542002 RNF216Q9NWF9 866 aaPredicted RBP13.02□□□□□ -0.33
YBX3-212ENST00000542002 MYBBP1AQ9BQG0 1328 aaKnown RBP13.02□□□□□ -0.33
YBX3-212ENST00000542002 LOC102724428A0A0B4J2F2 783 aa13.01□□□□□ -0.33
YBX3-212ENST00000542002 SIK1P57059 783 aa13.01□□□□□ -0.33
YBX3-212ENST00000542002 C1QBPQ07021 282 aaKnown RBP13.01□□□□□ -0.33
YBX3-212ENST00000542002 SMIM5Q71RC9 77 aa13.01□□□□□ -0.33
YBX3-212ENST00000542002 AMIGO3Q86WK7 504 aa13.01□□□□□ -0.33
YBX3-212ENST00000542002 PAPPAQ13219 1627 aa13□□□□□ -0.33
YBX3-212ENST00000542002 ZBTB7AO95365 584 aa13□□□□□ -0.33
YBX3-212ENST00000542002 LINC00116Q8NCU8 138 aa13□□□□□ -0.33
YBX3-212ENST00000542002 SLC52A2Q9HAB3 445 aa13□□□□□ -0.33
YBX3-212ENST00000542002 ITGB4P16144 1822 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 PNPLA7Q6ZV29 1317 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 GNAT3A8MTJ3 354 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 ATP6V1AP38606 617 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 SLC39A6Q13433 755 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 GAS2L2Q8NHY3 880 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 TFCP2L1Q9NZI6 479 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 LY75O60449 1722 aa12.99□□□□□ -0.33
YBX3-212ENST00000542002 PTCD1O75127 700 aaKnown RBP12.98□□□□□ -0.33
YBX3-212ENST00000542002 CCDC184Q52MB2 194 aa12.98□□□□□ -0.33
YBX3-212ENST00000542002 RBM42Q9BTD8 480 aaKnown RBP12.98□□□□□ -0.33
YBX3-212ENST00000542002 ATF5Q9Y2D1 282 aaPredicted RBP12.98□□□□□ -0.33
YBX3-212ENST00000542002 MAP3K5Q99683 1374 aa12.97□□□□□ -0.33
YBX3-212ENST00000542002 PTGER2P43116 358 aa12.97□□□□□ -0.33
YBX3-212ENST00000542002 DCTN1Q14203 1278 aa12.97□□□□□ -0.33
YBX3-212ENST00000542002 MCM10Q7L590 875 aa12.97□□□□□ -0.33
YBX3-212ENST00000542002 COL23A1Q86Y22 540 aaPredicted RBP12.97□□□□□ -0.33
YBX3-212ENST00000542002 CEMIPQ8WUJ3 1361 aa12.95□□□□□ -0.34
YBX3-212ENST00000542002 KCNQ3O43525 872 aa12.95□□□□□ -0.34
YBX3-212ENST00000542002 SGIP1Q9BQI5 828 aa12.95□□□□□ -0.34
YBX3-212ENST00000542002 SPON1Q9HCB6 807 aa12.95□□□□□ -0.34
YBX3-212ENST00000542002 ADAMTS8Q9UP79 889 aa12.95□□□□□ -0.34
YBX3-212ENST00000542002 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
YBX3-212ENST00000542002 ADAMTS7Q9UKP4 1686 aa12.93□□□□□ -0.34
YBX3-212ENST00000542002 MRC1P22897 1456 aa12.93□□□□□ -0.34
YBX3-212ENST00000542002 NFE2L2Q16236 605 aa12.93□□□□□ -0.34
YBX3-212ENST00000542002 CCDC146Q8IYE0 955 aa12.93□□□□□ -0.34
YBX3-212ENST00000542002 MTFR1LQ9H019 292 aa12.93□□□□□ -0.34
YBX3-212ENST00000542002 SCN11AQ9UI33 1791 aa12.92□□□□□ -0.34
YBX3-212ENST00000542002 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.92□□□□□ -0.34
YBX3-212ENST00000542002 HTATSF1O43719 755 aaKnown RBP12.92□□□□□ -0.34
YBX3-212ENST00000542002 TEFQ10587 303 aa12.92□□□□□ -0.34
YBX3-212ENST00000542002 DNAJC10Q8IXB1 793 aa12.92□□□□□ -0.34
YBX3-212ENST00000542002 AK7Q96M32 723 aa12.92□□□□□ -0.34
YBX3-212ENST00000542002 THUMPD2Q9BTF0 503 aaKnown RBP12.92□□□□□ -0.34
YBX3-212ENST00000542002 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
YBX3-212ENST00000542002 BTBD11A6QL63 1104 aa12.91□□□□□ -0.34
YBX3-212ENST00000542002 GNPATO15228 680 aa12.91□□□□□ -0.34
YBX3-212ENST00000542002 PHF14O94880 888 aa12.91□□□□□ -0.34
YBX3-212ENST00000542002 RC3H1Q5TC82 1133 aaKnown RBP12.91□□□□□ -0.34
YBX3-212ENST00000542002 INTS5Q6P9B9 1019 aaKnown RBP12.91□□□□□ -0.34
YBX3-212ENST00000542002 ZNF790Q6PG37 636 aa12.91□□□□□ -0.34
YBX3-212ENST00000542002 RTF1Q92541 710 aaKnown RBP12.91□□□□□ -0.34
YBX3-212ENST00000542002 ZNF496Q96IT1 587 aaPredicted RBP12.91□□□□□ -0.34
YBX3-212ENST00000542002 TMPOP42166 694 aaKnown RBP12.9□□□□□ -0.34
YBX3-212ENST00000542002 CRKLP46109 303 aaKnown RBP12.9□□□□□ -0.34
YBX3-212ENST00000542002 SLC16A10Q8TF71 515 aa12.9□□□□□ -0.34
YBX3-212ENST00000542002 RRP7AQ9Y3A4 280 aaKnown RBP12.9□□□□□ -0.34
YBX3-212ENST00000542002 LRP5O75197 1615 aa12.9□□□□□ -0.34
YBX3-212ENST00000542002 C4BP0C0L5 1744 aa12.9□□□□□ -0.34
YBX3-212ENST00000542002 C5P01031 1676 aa12.89□□□□□ -0.35
YBX3-212ENST00000542002 KCPQ6ZWJ8 1503 aa12.89□□□□□ -0.35
YBX3-212ENST00000542002 CYP19A1P11511 503 aaPredicted RBP12.89□□□□□ -0.35
YBX3-212ENST00000542002 RIPK4P57078 832 aa12.89□□□□□ -0.35
YBX3-212ENST00000542002 WDR43Q15061 677 aaKnown RBP eCLIP12.89□□□□□ -0.35
YBX3-212ENST00000542002 MSL1Q68DK7 614 aa12.89□□□□□ -0.35
YBX3-212ENST00000542002 PNNQ9H307 717 aaKnown RBP12.89□□□□□ -0.35
YBX3-212ENST00000542002 CNTNAP4Q9C0A0 1308 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 TAF1LQ8IZX4 1826 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 PRAMEF22A3QJZ6 481 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 RPS6KA4O75676 772 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 SSFA2P28290 1259 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 TAF7Q15545 349 aaPredicted RBP12.88□□□□□ -0.35
YBX3-212ENST00000542002 VSIG10Q8N0Z9 540 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 FLAD1Q8NFF5 587 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 ARHGEF1Q92888 912 aaKnown RBP12.88□□□□□ -0.35
YBX3-212ENST00000542002 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 MAPK8IP3Q9UPT6 1336 aa12.88□□□□□ -0.35
YBX3-212ENST00000542002 ANP32CO43423 234 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 NEFMP07197 916 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 HMGB2P26583 209 aaKnown RBP12.87□□□□□ -0.35
YBX3-212ENST00000542002 NEUROD2Q15784 382 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 TTC5Q8N0Z6 440 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 PNISRQ8TF01 805 aaKnown RBP12.87□□□□□ -0.35
YBX3-212ENST00000542002 TRIM35Q9UPQ4 493 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 RTCBQ9Y3I0 505 aaKnown RBP12.87□□□□□ -0.35
YBX3-212ENST00000542002 TUBGCP6Q96RT7 1819 aa12.87□□□□□ -0.35
YBX3-212ENST00000542002 ARXQ96QS3 562 aa12.86□□□□□ -0.35
YBX3-212ENST00000542002 PPP1R1BQ9UD71 204 aaPredicted RBP12.86□□□□□ -0.35
YBX3-212ENST00000542002 USP16Q9Y5T5 823 aa12.86□□□□□ -0.35
YBX3-212ENST00000542002 HEG1Q9ULI3 1381 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 SENP3-EIF4A1A0A087X0R7 540 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 FMNL2Q96PY5 1086 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 FHDC1Q9C0D6 1143 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms