RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TFCP2L1Q9NZI6 479 aa19.08■□□□□ 0.64
USP28-209ENST00000540925 VIRMAQ69YN4 1812 aaKnown RBP19.07■□□□□ 0.64
USP28-209ENST00000540925 CABP4P57796 275 aa19.07■□□□□ 0.64
USP28-209ENST00000540925 DDX10Q13206 875 aaKnown RBP19.07■□□□□ 0.64
USP28-209ENST00000540925 ITPK1Q13572 414 aa19.07■□□□□ 0.64
USP28-209ENST00000540925 SLC16A10Q8TF71 515 aa19.07■□□□□ 0.64
USP28-209ENST00000540925 LGR6Q9HBX8 967 aa19.07■□□□□ 0.64
USP28-209ENST00000540925 UBR3Q6ZT12 1888 aa19.07■□□□□ 0.64
USP28-209ENST00000540925 CICQ96RK0 1608 aaPredicted RBP19.07■□□□□ 0.64
USP28-209ENST00000540925 YY1P25490 414 aa19.06■□□□□ 0.64
USP28-209ENST00000540925 NFATC2IPQ8NCF5 419 aa19.06■□□□□ 0.64
USP28-209ENST00000540925 LINC00116Q8NCU8 138 aa19.06■□□□□ 0.64
USP28-209ENST00000540925 ATF5Q9Y2D1 282 aaPredicted RBP19.06■□□□□ 0.64
USP28-209ENST00000540925 RNMTO43148 476 aaKnown RBP19.05■□□□□ 0.64
USP28-209ENST00000540925 AMIGO3Q86WK7 504 aa19.05■□□□□ 0.64
USP28-209ENST00000540925 PHACTR3Q96KR7 559 aa19.05■□□□□ 0.64
USP28-209ENST00000540925 SLC52A2Q9HAB3 445 aa19.05■□□□□ 0.64
USP28-209ENST00000540925 COL5A3P25940 1745 aaPredicted RBP19.05■□□□□ 0.64
USP28-209ENST00000540925 COL23A1Q86Y22 540 aaPredicted RBP19.04■□□□□ 0.64
USP28-209ENST00000540925 NUDCQ9Y266 331 aa19.04■□□□□ 0.64
USP28-209ENST00000540925 FCHSD2O94868 740 aa19.03■□□□□ 0.64
USP28-209ENST00000540925 PRKAR2BP31323 418 aa19.03■□□□□ 0.64
USP28-209ENST00000540925 ATP6V1AP38606 617 aa19.03■□□□□ 0.64
USP28-209ENST00000540925 RALBP1Q15311 655 aa19.03■□□□□ 0.64
USP28-209ENST00000540925 MAP3K5Q99683 1374 aa19.03■□□□□ 0.64
USP28-209ENST00000540925 GAS2L2Q8NHY3 880 aa19.02■□□□□ 0.64
USP28-209ENST00000540925 U2AF1L5P0DN76 240 aaPredicted RBP19.01■□□□□ 0.63
USP28-209ENST00000540925 U2AF1Q01081 240 aaKnown RBP eCLIP19.01■□□□□ 0.63
USP28-209ENST00000540925 CEMIPQ8WUJ3 1361 aa19.01■□□□□ 0.63
USP28-209ENST00000540925 SIPA1L3O60292 1781 aaPredicted RBP19.01■□□□□ 0.63
USP28-209ENST00000540925 KCPQ6ZWJ8 1503 aa19■□□□□ 0.63
USP28-209ENST00000540925 TJP1Q07157 1748 aa19■□□□□ 0.63
USP28-209ENST00000540925 FLAD1Q8NFF5 587 aa19■□□□□ 0.63
USP28-209ENST00000540925 IL17REQ8NFR9 667 aa19■□□□□ 0.63
USP28-209ENST00000540925 GNAT3A8MTJ3 354 aa18.99■□□□□ 0.63
USP28-209ENST00000540925 SSFA2P28290 1259 aa18.99■□□□□ 0.63
USP28-209ENST00000540925 AK7Q96M32 723 aa18.99■□□□□ 0.63
USP28-209ENST00000540925 PPP1R1BQ9UD71 204 aaPredicted RBP18.99■□□□□ 0.63
USP28-209ENST00000540925 UBR2Q8IWV8 1755 aa18.98■□□□□ 0.63
USP28-209ENST00000540925 RC3H1Q5TC82 1133 aaKnown RBP18.98■□□□□ 0.63
USP28-209ENST00000540925 RBM42Q9BTD8 480 aaKnown RBP18.98■□□□□ 0.63
USP28-209ENST00000540925 MYH14Q7Z406 1995 aaKnown RBP18.98■□□□□ 0.63
USP28-209ENST00000540925 CNTNAP4Q9C0A0 1308 aa18.98■□□□□ 0.63
USP28-209ENST00000540925 ARXQ96QS3 562 aa18.97■□□□□ 0.63
USP28-209ENST00000540925 UTRNP46939 3433 aa18.96■□□□□ 0.63
USP28-209ENST00000540925 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.96■□□□□ 0.63
USP28-209ENST00000540925 PTCD1O75127 700 aaKnown RBP18.96■□□□□ 0.63
USP28-209ENST00000540925 SMIM5Q71RC9 77 aa18.96■□□□□ 0.63
USP28-209ENST00000540925 PLEKHF1Q96S99 279 aa18.96■□□□□ 0.63
USP28-209ENST00000540925 MYBBP1AQ9BQG0 1328 aaKnown RBP18.96■□□□□ 0.63
USP28-209ENST00000540925 SLC39A6Q13433 755 aa18.95■□□□□ 0.62
USP28-209ENST00000540925 FHDC1Q9C0D6 1143 aaPredicted RBP18.95■□□□□ 0.62
USP28-209ENST00000540925 GOLGB1Q14789 3259 aaKnown RBP18.94■□□□□ 0.62
USP28-209ENST00000540925 GNPATO15228 680 aa18.94■□□□□ 0.62
USP28-209ENST00000540925 SYT17Q9BSW7 474 aa18.93■□□□□ 0.62
USP28-209ENST00000540925 PRKRIP1Q9H875 184 aaPredicted RBP18.93■□□□□ 0.62
USP28-209ENST00000540925 PHF14O94880 888 aa18.92■□□□□ 0.62
USP28-209ENST00000540925 POLD1P28340 1107 aa18.92■□□□□ 0.62
USP28-209ENST00000540925 VSIG10Q8N0Z9 540 aa18.92■□□□□ 0.62
USP28-209ENST00000540925 MSH5O43196 834 aa18.91■□□□□ 0.62
USP28-209ENST00000540925 HTATSF1O43719 755 aaKnown RBP18.91■□□□□ 0.62
USP28-209ENST00000540925 RPS6KA4O75676 772 aa18.91■□□□□ 0.62
USP28-209ENST00000540925 ADRA2BP18089 450 aa18.91■□□□□ 0.62
USP28-209ENST00000540925 CRKLP46109 303 aaKnown RBP18.9■□□□□ 0.62
USP28-209ENST00000540925 TEFQ10587 303 aa18.9■□□□□ 0.62
USP28-209ENST00000540925 MSL1Q68DK7 614 aa18.9■□□□□ 0.62
USP28-209ENST00000540925 INTS5Q6P9B9 1019 aaKnown RBP18.9■□□□□ 0.62
USP28-209ENST00000540925 DNAJC10Q8IXB1 793 aa18.9■□□□□ 0.62
USP28-209ENST00000540925 RTCBQ9Y3I0 505 aaKnown RBP18.9■□□□□ 0.62
USP28-209ENST00000540925 C4AP0C0L4 1744 aa18.9■□□□□ 0.62
USP28-209ENST00000540925 CYP19A1P11511 503 aaPredicted RBP18.89■□□□□ 0.61
USP28-209ENST00000540925 ZNF790Q6PG37 636 aa18.89■□□□□ 0.61
USP28-209ENST00000540925 DLG5Q8TDM6 1919 aa18.89■□□□□ 0.61
USP28-209ENST00000540925 MCM10Q7L590 875 aa18.88■□□□□ 0.61
USP28-209ENST00000540925 ARHGEF1Q92888 912 aaKnown RBP18.88■□□□□ 0.61
USP28-209ENST00000540925 ZNF496Q96IT1 587 aaPredicted RBP18.88■□□□□ 0.61
USP28-209ENST00000540925 TRAPPC3LQ5T215 181 aa18.87■□□□□ 0.61
USP28-209ENST00000540925 HEG1Q9ULI3 1381 aa18.86■□□□□ 0.61
USP28-209ENST00000540925 NFE2L2Q16236 605 aa18.86■□□□□ 0.61
USP28-209ENST00000540925 CCDC87Q9NVE4 849 aa18.86■□□□□ 0.61
USP28-209ENST00000540925 SOS1Q07889 1333 aaPredicted RBP18.85■□□□□ 0.61
USP28-209ENST00000540925 DCTN1Q14203 1278 aa18.85■□□□□ 0.61
USP28-209ENST00000540925 RTF1Q92541 710 aaKnown RBP18.85■□□□□ 0.61
USP28-209ENST00000540925 PNNQ9H307 717 aaKnown RBP18.85■□□□□ 0.61
USP28-209ENST00000540925 ZNF316A6NFI3 1004 aaPredicted RBP18.84■□□□□ 0.61
USP28-209ENST00000540925 BTBD11A6QL63 1104 aa18.84■□□□□ 0.61
USP28-209ENST00000540925 KCNQ3O43525 872 aa18.84■□□□□ 0.61
USP28-209ENST00000540925 GYS1P13807 737 aa18.84■□□□□ 0.61
USP28-209ENST00000540925 TTC5Q8N0Z6 440 aa18.84■□□□□ 0.61
USP28-209ENST00000540925 USP42Q9H9J4 1324 aaKnown RBP18.82■□□□□ 0.6
USP28-209ENST00000540925 NLGN2Q8NFZ4 835 aa18.82■□□□□ 0.6
USP28-209ENST00000540925 FMNL2Q96PY5 1086 aa18.82■□□□□ 0.6
USP28-209ENST00000540925 ZBTB1Q9Y2K1 713 aa18.82■□□□□ 0.6
USP28-209ENST00000540925 CD2APQ9Y5K6 639 aa18.82■□□□□ 0.6
USP28-209ENST00000540925 DCAF8L1A6NGE4 600 aa18.81■□□□□ 0.6
USP28-209ENST00000540925 RFC4P35249 363 aa18.81■□□□□ 0.6
USP28-209ENST00000540925 NLGN1Q8N2Q7 840 aa18.81■□□□□ 0.6
USP28-209ENST00000540925 KDM3BQ7LBC6 1761 aa18.81■□□□□ 0.6
USP28-209ENST00000540925 MAPK8IP3Q9UPT6 1336 aa18.8■□□□□ 0.6
USP28-209ENST00000540925 NEFMP07197 916 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms