RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 NR1H3Q13133 447 aa8.27□□□□□ -1.09
PRKDC-209ENST00000540819 LYPD4Q6UWN0 246 aa8.27□□□□□ -1.09
PRKDC-209ENST00000540819 WWC1Q8IX03 1113 aa8.27□□□□□ -1.09
PRKDC-209ENST00000540819 TRIM22Q8IYM9 498 aa8.27□□□□□ -1.09
PRKDC-209ENST00000540819 GJD4Q96KN9 370 aaPredicted RBP8.27□□□□□ -1.09
PRKDC-209ENST00000540819 GAS2L1Q99501 681 aaPredicted RBP8.27□□□□□ -1.09
PRKDC-209ENST00000540819 CUEDC1Q9NWM3 386 aaPredicted RBP8.27□□□□□ -1.09
PRKDC-209ENST00000540819 ERVK-9P63128 1117 aa8.26□□□□□ -1.09
PRKDC-209ENST00000540819 POU4F2Q12837 409 aa8.26□□□□□ -1.09
PRKDC-209ENST00000540819 CYP2U1Q7Z449 544 aa8.26□□□□□ -1.09
PRKDC-209ENST00000540819 CALR3Q96L12 384 aaKnown RBP8.26□□□□□ -1.09
PRKDC-209ENST00000540819 PCDHB11Q9Y5F2 797 aa8.26□□□□□ -1.09
PRKDC-209ENST00000540819 KANK3Q6NY19 840 aa8.25□□□□□ -1.09
PRKDC-209ENST00000540819 PBXIP1Q96AQ6 731 aa8.25□□□□□ -1.09
PRKDC-209ENST00000540819 TRERF1Q96PN7 1200 aa8.25□□□□□ -1.09
PRKDC-209ENST00000540819 DYRK1BQ9Y463 629 aa8.25□□□□□ -1.09
PRKDC-209ENST00000540819 CELA2BP08218 269 aaPredicted RBP8.24□□□□□ -1.09
PRKDC-209ENST00000540819 SUZ12Q15022 739 aaKnown RBP8.24□□□□□ -1.09
PRKDC-209ENST00000540819 DBN1Q16643 649 aa8.24□□□□□ -1.09
PRKDC-209ENST00000540819 SND1Q7KZF4 910 aaKnown RBP eCLIP8.24□□□□□ -1.09
PRKDC-209ENST00000540819 ZNF837Q96EG3 531 aaPredicted RBP8.24□□□□□ -1.09
PRKDC-209ENST00000540819 MBIPQ9NS73 344 aa8.24□□□□□ -1.09
PRKDC-209ENST00000540819 GPR25O00155 361 aa8.23□□□□□ -1.09
PRKDC-209ENST00000540819 CSB-PGBD3P0DP91 1061 aa8.23□□□□□ -1.09
PRKDC-209ENST00000540819 CLN3Q13286 438 aa8.23□□□□□ -1.09
PRKDC-209ENST00000540819 GAS6Q14393 721 aa8.23□□□□□ -1.09
PRKDC-209ENST00000540819 FAM177A1Q8N128 213 aaPredicted RBP8.22□□□□□ -1.09
PRKDC-209ENST00000540819 GTPBP3Q969Y2 492 aaKnown RBP8.22□□□□□ -1.09
PRKDC-209ENST00000540819 GRIP2Q9C0E4 1043 aa8.22□□□□□ -1.09
PRKDC-209ENST00000540819 TIMMDC1Q9NPL8 285 aa8.22□□□□□ -1.09
PRKDC-209ENST00000540819 NSFL1CQ9UNZ2 370 aaKnown RBP8.22□□□□□ -1.09
PRKDC-209ENST00000540819 DNMT3AQ9Y6K1 912 aaPredicted RBP8.22□□□□□ -1.09
PRKDC-209ENST00000540819 NDUFB9Q9Y6M9 179 aa8.22□□□□□ -1.09
PRKDC-209ENST00000540819 WDR44Q5JSH3 913 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 GPAT2Q6NUI2 795 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 NBPF10Q6P3W6 841 aaKnown RBP8.21□□□□□ -1.1
PRKDC-209ENST00000540819 NBPF15Q8N660 670 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 NEDD1Q8NHV4 660 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 ARHGEF10LQ9HCE6 1279 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 SNRKQ9NRH2 765 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 IGF1RP08069 1367 aa8.21□□□□□ -1.1
PRKDC-209ENST00000540819 PHF20L1A8MW92 1017 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 MYCP01106 439 aaPredicted RBP8.2□□□□□ -1.1
PRKDC-209ENST00000540819 IGHA1P01876 353 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 SCTRP47872 440 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 TAS1R3Q7RTX0 852 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 GLMNQ92990 594 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 CHMP4AQ9BY43 222 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 IGSF5Q9NSI5 407 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 IVNS1ABPQ9Y6Y0 642 aa8.2□□□□□ -1.1
PRKDC-209ENST00000540819 GNRH1P01148 92 aa8.19□□□□□ -1.1
PRKDC-209ENST00000540819 F11P03951 625 aa8.19□□□□□ -1.1
PRKDC-209ENST00000540819 GTF2E1P29083 439 aaPredicted RBP8.19□□□□□ -1.1
PRKDC-209ENST00000540819 FOXK2Q01167 660 aa8.19□□□□□ -1.1
PRKDC-209ENST00000540819 PODNQ7Z5L7 613 aa8.19□□□□□ -1.1
PRKDC-209ENST00000540819 BEND7Q8N7W2 519 aaPredicted RBP8.19□□□□□ -1.1
PRKDC-209ENST00000540819 OSBPL3Q9H4L5 887 aa8.19□□□□□ -1.1
PRKDC-209ENST00000540819 SPATA31C2B4DYI2 1134 aa8.18□□□□□ -1.1
PRKDC-209ENST00000540819 WASLO00401 505 aaPredicted RBP8.18□□□□□ -1.1
PRKDC-209ENST00000540819 SOCS7O14512 581 aa8.18□□□□□ -1.1
PRKDC-209ENST00000540819 BCRP11274 1271 aa8.18□□□□□ -1.1
PRKDC-209ENST00000540819 MX2P20592 715 aa8.18□□□□□ -1.1
PRKDC-209ENST00000540819 NUCKS1Q9H1E3 243 aaKnown RBP8.18□□□□□ -1.1
PRKDC-209ENST00000540819 PRM3Q9NNZ6 103 aa8.18□□□□□ -1.1
PRKDC-209ENST00000540819 UNCXA6NJT0 531 aa8.17□□□□□ -1.1
PRKDC-209ENST00000540819 CNKSR1Q969H4 720 aa8.17□□□□□ -1.1
PRKDC-209ENST00000540819 ESYT1Q9BSJ8 1104 aa8.17□□□□□ -1.1
PRKDC-209ENST00000540819 GDPD2Q9HCC8 539 aa8.17□□□□□ -1.1
PRKDC-209ENST00000540819 RBM47A0AV96 593 aaKnown RBP8.16□□□□□ -1.1
PRKDC-209ENST00000540819 CENPCQ03188 943 aa8.16□□□□□ -1.1
PRKDC-209ENST00000540819 MTMR14Q8NCE2 650 aa8.16□□□□□ -1.1
PRKDC-209ENST00000540819 RAB6BQ9NRW1 208 aa8.16□□□□□ -1.1
PRKDC-209ENST00000540819 CEP126Q9P2H0 1117 aa8.16□□□□□ -1.1
PRKDC-209ENST00000540819 CNTNAP5Q8WYK1 1306 aa8.15□□□□□ -1.1
PRKDC-209ENST00000540819 LOC100996750A0A140TA64 210 aa8.15□□□□□ -1.1
PRKDC-209ENST00000540819 ZSCAN10Q96SZ4 725 aaPredicted RBP8.15□□□□□ -1.1
PRKDC-209ENST00000540819 KRTAP4-6Q9BYQ5 205 aa8.15□□□□□ -1.1
PRKDC-209ENST00000540819 PHF24Q9UPV7 400 aa8.15□□□□□ -1.1
PRKDC-209ENST00000540819 CANXP27824 592 aaKnown RBP8.14□□□□□ -1.11
PRKDC-209ENST00000540819 PHKA2P46019 1235 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 MAP2K3P46734 347 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 ESCO1Q5FWF5 840 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 GNASQ5JWF2 1037 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 TMEM214Q6NUQ4 689 aaKnown RBP8.14□□□□□ -1.11
PRKDC-209ENST00000540819 ACDQ96AP0 544 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 CFHR5Q9BXR6 569 aa8.14□□□□□ -1.11
PRKDC-209ENST00000540819 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-209ENST00000540819 POM121CA8CG34 1229 aa8.13□□□□□ -1.11
PRKDC-209ENST00000540819 EIF4G2P78344 907 aaKnown RBP eCLIP8.13□□□□□ -1.11
PRKDC-209ENST00000540819 USP4Q13107 963 aa8.13□□□□□ -1.11
PRKDC-209ENST00000540819 PGBD3Q8N328 593 aa8.13□□□□□ -1.11
PRKDC-209ENST00000540819 GPAMQ9HCL2 828 aa8.13□□□□□ -1.11
PRKDC-209ENST00000540819 LRRC4BQ9NT99 713 aa8.13□□□□□ -1.11
PRKDC-209ENST00000540819 A0A1B0GTH6 734 aa8.12□□□□□ -1.11
PRKDC-209ENST00000540819 IL2RAP01589 272 aa8.12□□□□□ -1.11
PRKDC-209ENST00000540819 ABL2P42684 1182 aa8.12□□□□□ -1.11
PRKDC-209ENST00000540819 SRPK2P78362 688 aaKnown RBP8.12□□□□□ -1.11
PRKDC-209ENST00000540819 XAGE2Q96GT9 111 aa8.12□□□□□ -1.11
PRKDC-209ENST00000540819 CDCA7Q9BWT1 371 aaPredicted RBP8.12□□□□□ -1.11
PRKDC-209ENST00000540819 VRTNQ9H8Y1 702 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms