RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF397Q8NF99 534 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-214ENST00000540539 PYCARDQ9ULZ3 195 aa11.39□□□□□ -0.59
CLIP1-214ENST00000540539 PRPF40AO75400 957 aaKnown RBP11.39□□□□□ -0.59
CLIP1-214ENST00000540539 COG6Q9Y2V7 657 aa11.39□□□□□ -0.59
CLIP1-214ENST00000540539 GSCP56915 257 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-214ENST00000540539 KRBA2Q6ZNG9 492 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 NSFL1CQ9UNZ2 370 aaKnown RBP11.38□□□□□ -0.59
CLIP1-214ENST00000540539 ZNF521Q96K83 1311 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 GOLGA2Q08379 1002 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 CDCA8Q53HL2 280 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 PMFBP1Q8TBY8 1022 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 USP25Q9UHP3 1055 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 MYO3AQ8NEV4 1616 aa11.38□□□□□ -0.59
CLIP1-214ENST00000540539 SMTNL1A8MU46 457 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 E2F4Q16254 413 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 CCDC91Q7Z6B0 441 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 MNS1Q8NEH6 495 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 PANK1Q8TE04 598 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 KIF2CQ99661 725 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 TSPY26PQ9H489 355 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 PCDHB15Q9Y5E8 787 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 A0A1B0GUL7 405 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 PDE3AQ14432 1141 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 NBPF11Q86T75 865 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 PACS2Q86VP3 889 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 A2ML1A8K2U0 1454 aa11.37□□□□□ -0.59
CLIP1-214ENST00000540539 CYP2E1P05181 493 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-214ENST00000540539 KDM5AP29375 1690 aaKnown RBP11.36□□□□□ -0.59
CLIP1-214ENST00000540539 UBR1Q8IWV7 1749 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 GOLGA6L1Q8N7Z2 621 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 CCDC191Q8NCU4 936 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 CALR3Q96L12 384 aaKnown RBP11.36□□□□□ -0.59
CLIP1-214ENST00000540539 KCNF1Q9H3M0 494 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 IFT172Q9UG01 1749 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 ADCY5O95622 1261 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 BMS1Q14692 1282 aaKnown RBP11.36□□□□□ -0.59
CLIP1-214ENST00000540539 SRLQ86TD4 932 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 TXLNBQ8N3L3 684 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 DEF6Q9H4E7 631 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 PPLO60437 1756 aa11.36□□□□□ -0.59
CLIP1-214ENST00000540539 RPGRIP1LQ68CZ1 1315 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 SLFN5Q08AF3 891 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 NBPF9Q3BBW0 867 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 TTC31Q49AM3 519 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-214ENST00000540539 FBXO38Q6PIJ6 1188 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 CFAP44Q96MT7 982 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 PKP1Q13835 747 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 LRCH2Q5VUJ6 765 aa11.35□□□□□ -0.59
CLIP1-214ENST00000540539 NBPF10Q6P3W6 841 aaKnown RBP11.34□□□□□ -0.59
CLIP1-214ENST00000540539 BORCS6Q96GS4 357 aa11.34□□□□□ -0.59
CLIP1-214ENST00000540539 CEP170BQ9Y4F5 1589 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-214ENST00000540539 GTF3C6Q969F1 213 aa11.34□□□□□ -0.59
CLIP1-214ENST00000540539 RRP15Q9Y3B9 282 aaKnown RBP11.34□□□□□ -0.59
CLIP1-214ENST00000540539 NEXMIFQ5QGS0 1516 aa11.34□□□□□ -0.59
CLIP1-214ENST00000540539 NKTRP30414 1462 aaKnown RBP11.34□□□□□ -0.59
CLIP1-214ENST00000540539 PPP1R12AO14974 1030 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-214ENST00000540539 NUCB2P80303 420 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 BIRC2Q13490 618 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 ZSCAN26Q16670 478 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 LRRFIP2Q9Y608 721 aaKnown RBP11.33□□□□□ -0.6
CLIP1-214ENST00000540539 PLEKHG2Q9H7P9 1386 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 TTC36A6NLP5 189 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 PPP2R5AQ15172 486 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 NUTM2DQ5VT03 806 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-214ENST00000540539 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLIP1-214ENST00000540539 ADAMTS8Q9UP79 889 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 UHRF1BP1Q6BDS2 1440 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 ZNF142P52746 1687 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-214ENST00000540539 MYOM2P54296 1465 aa11.33□□□□□ -0.6
CLIP1-214ENST00000540539 ATXN8OSP0DMR3 200 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 SWT1Q5T5J6 900 aaKnown RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 TRMT2AQ8IZ69 625 aaKnown RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 CCDC112Q8NEF3 446 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 RBM42Q9BTD8 480 aaKnown RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 PRAG1Q86YV5 1406 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 ADGRF5Q8IZF2 1346 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 RIMS2Q9UQ26 1411 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 ATP6V1AP38606 617 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 UVSSAQ2YD98 709 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 THEMISQ8N1K5 641 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 CHAMP1Q96JM3 812 aa11.32□□□□□ -0.6
CLIP1-214ENST00000540539 RBM28Q9NW13 759 aaKnown RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 ZBTB12Q9Y330 459 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-214ENST00000540539 C16orf45Q96MC5 204 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-214ENST00000540539 TMEM2Q9UHN6 1383 aa11.31□□□□□ -0.6
CLIP1-214ENST00000540539 PTPRCP08575 1304 aa11.31□□□□□ -0.6
CLIP1-214ENST00000540539 RTF1Q92541 710 aaKnown RBP11.31□□□□□ -0.6
CLIP1-214ENST00000540539 ZFYVE9O95405 1425 aa11.31□□□□□ -0.6
CLIP1-214ENST00000540539 MBD3O95983 291 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 MAP2K2P36507 400 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 ST5P78524 1137 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 SLFNL1Q499Z3 407 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 MCTP2Q6DN12 878 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 SUGP1Q8IWZ8 645 aaKnown RBP11.3□□□□□ -0.6
CLIP1-214ENST00000540539 FAM184AQ8NB25 1140 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP1-214ENST00000540539 V9GYY5 206 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-214ENST00000540539 MAP9Q49MG5 647 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 TEX35Q5T0J7 233 aa11.3□□□□□ -0.6
CLIP1-214ENST00000540539 CWC15Q9P013 229 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms