RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PRPF40BQ6NWY9 871 aaKnown RBP15.51■□□□□ 0.07
MSH6-210ENST00000540021 CLTCL1P53675 1640 aa15.51■□□□□ 0.07
MSH6-210ENST00000540021 AIMP1Q12904 312 aaKnown RBP15.51■□□□□ 0.07
MSH6-210ENST00000540021 CLASRPQ8N2M8 674 aaKnown RBP15.51■□□□□ 0.07
MSH6-210ENST00000540021 TCEANC2Q96MN5 208 aa15.51■□□□□ 0.07
MSH6-210ENST00000540021 ABCC4O15439 1325 aa15.51■□□□□ 0.07
MSH6-210ENST00000540021 UNC13BO14795 1591 aa15.51■□□□□ 0.07
MSH6-210ENST00000540021 STX6O43752 255 aa15.5■□□□□ 0.07
MSH6-210ENST00000540021 FLIIQ13045 1269 aa15.5■□□□□ 0.07
MSH6-210ENST00000540021 JARID2Q92833 1246 aaPredicted RBP15.5■□□□□ 0.07
MSH6-210ENST00000540021 C16orf45Q96MC5 204 aaPredicted RBP15.5■□□□□ 0.07
MSH6-210ENST00000540021 LETM1O95202 739 aaPredicted RBP15.5■□□□□ 0.07
MSH6-210ENST00000540021 PDRG1Q9NUG6 133 aa15.5■□□□□ 0.07
MSH6-210ENST00000540021 TFIP11Q9UBB9 837 aaKnown RBP15.5■□□□□ 0.07
MSH6-210ENST00000540021 NLRP6P59044 892 aa15.5■□□□□ 0.07
MSH6-210ENST00000540021 TEFQ10587 303 aa15.5■□□□□ 0.07
MSH6-210ENST00000540021 NECAB1Q8N987 351 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 TNMDQ9H2S6 317 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 CYP46A1Q9Y6A2 500 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 SIL1Q9H173 461 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 IL13P35225 146 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 PTPRCP08575 1304 aa15.49■□□□□ 0.07
MSH6-210ENST00000540021 WASLO00401 505 aaPredicted RBP15.49■□□□□ 0.07
MSH6-210ENST00000540021 ANXA1P04083 346 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 DNM1Q05193 864 aaKnown RBP15.48■□□□□ 0.07
MSH6-210ENST00000540021 SRCIN1Q9C0H9 1055 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 CHMLP26374 656 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 EIF4A2Q14240 407 aaKnown RBP15.48■□□□□ 0.07
MSH6-210ENST00000540021 ATP7AQ04656 1500 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 HTATSF1O43719 755 aaKnown RBP15.48■□□□□ 0.07
MSH6-210ENST00000540021 NRDCO43847 1150 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 GJB2P29033 226 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 FSD1Q9BTV5 496 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 NUP62CLQ9H1M0 184 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 LIMCH1Q9UPQ0 1083 aa15.48■□□□□ 0.07
MSH6-210ENST00000540021 KRT85P78386 507 aa15.47■□□□□ 0.07
MSH6-210ENST00000540021 PPFIA3O75145 1194 aa15.47■□□□□ 0.07
MSH6-210ENST00000540021 PNMA6EA0A0J9YXQ4 647 aa15.47■□□□□ 0.07
MSH6-210ENST00000540021 ZNF500O60304 480 aaPredicted RBP15.47■□□□□ 0.07
MSH6-210ENST00000540021 FILIP1Q7Z7B0 1213 aa15.47■□□□□ 0.07
MSH6-210ENST00000540021 ZSCAN22P10073 491 aaPredicted RBP15.46■□□□□ 0.07
MSH6-210ENST00000540021 DDIT3P35638 169 aa15.46■□□□□ 0.07
MSH6-210ENST00000540021 SF3A1Q15459 793 aaKnown RBP15.46■□□□□ 0.07
MSH6-210ENST00000540021 FMNL2Q96PY5 1086 aa15.46■□□□□ 0.07
MSH6-210ENST00000540021 PPP1R42Q7Z4L9 355 aa15.46■□□□□ 0.07
MSH6-210ENST00000540021 USHBP1Q8N6Y0 703 aa15.46■□□□□ 0.07
MSH6-210ENST00000540021 PUS7Q96PZ0 661 aaKnown RBP15.46■□□□□ 0.07
MSH6-210ENST00000540021 LAMC1P11047 1609 aa15.46■□□□□ 0.07
MSH6-210ENST00000540021 G3BP1Q13283 466 aaKnown RBP eCLIP15.46■□□□□ 0.067e-7■■■■□ 20.1
MSH6-210ENST00000540021 DDX11Q96FC9 970 aa15.46■□□□□ 0.06
MSH6-210ENST00000540021 NPATQ14207 1427 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 AK2P54819 239 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 UBE2HP62256 183 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 FAM173BQ6P4H8 233 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 BRD1O95696 1058 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 MAP3K11Q16584 847 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 ZDHHC9Q9Y397 364 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 SPATA32Q96LK8 384 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 SLC26A8Q96RN1 970 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 AK9Q5TCS8 1911 aa15.45■□□□□ 0.06
MSH6-210ENST00000540021 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
MSH6-210ENST00000540021 RIMS2Q9UQ26 1411 aa15.44■□□□□ 0.06
MSH6-210ENST00000540021 SYT1P21579 422 aa15.44■□□□□ 0.06
MSH6-210ENST00000540021 TAF7Q15545 349 aaPredicted RBP15.44■□□□□ 0.06
MSH6-210ENST00000540021 AACSQ86V21 672 aa15.44■□□□□ 0.06
MSH6-210ENST00000540021 CCDC112Q8NEF3 446 aa15.44■□□□□ 0.06
MSH6-210ENST00000540021 RAB11FIP3O75154 756 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 RNF20Q5VTR2 975 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 CYB5RLQ6IPT4 315 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 PODXL2Q9NZ53 605 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 HSP90AB4PQ58FF6 505 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 UNC5CLQ8IV45 518 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 RTL1A6NKG5 1358 aa15.43■□□□□ 0.06
MSH6-210ENST00000540021 GORABQ5T7V8 394 aa15.42■□□□□ 0.06
MSH6-210ENST00000540021 PRIMPOLQ96LW4 560 aa15.42■□□□□ 0.06
MSH6-210ENST00000540021 MTHFSDQ2M296 383 aaKnown RBP15.42■□□□□ 0.06
MSH6-210ENST00000540021 CCDC186Q7Z3E2 898 aa15.42■□□□□ 0.06
MSH6-210ENST00000540021 KIF1BPQ96EK5 621 aa15.42■□□□□ 0.06
MSH6-210ENST00000540021 CCDC94Q9BW85 323 aaPredicted RBP15.42■□□□□ 0.06
MSH6-210ENST00000540021 PLXNC1O60486 1568 aa15.42■□□□□ 0.06
MSH6-210ENST00000540021 KDM4AO75164 1064 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 F13A1P00488 732 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 TPM3P06753 285 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 PTGS1P23219 599 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 MAPK8IP2Q13387 824 aaPredicted RBP15.41■□□□□ 0.06
MSH6-210ENST00000540021 BLOC1S2Q6QNY1 142 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 ZNF330Q9Y3S2 320 aaPredicted RBP15.41■□□□□ 0.06
MSH6-210ENST00000540021 MYOM2P54296 1465 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 ERCC6L2Q5T890 1561 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 GNL2Q13823 731 aaKnown RBP15.41■□□□□ 0.06
MSH6-210ENST00000540021 HOMER1Q86YM7 354 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 RHPN1Q8TCX5 695 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 CCDC8Q9H0W5 538 aaPredicted RBP15.41■□□□□ 0.06
MSH6-210ENST00000540021 ABCC1P33527 1531 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 TRMT1Q9NXH9 659 aaKnown RBP15.41■□□□□ 0.06
MSH6-210ENST00000540021 MAP3K4Q9Y6R4 1608 aa15.41■□□□□ 0.06
MSH6-210ENST00000540021 IQSEC2Q5JU85 1478 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 LUZP1Q86V48 1076 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 BOLA2Q9H3K6 86 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 378 ms