RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 OFD1O75665 1012 aa24.84■■□□□ 1.57
TMEM260-203ENST00000539559 TPM2P07951 284 aa24.84■■□□□ 1.57
TMEM260-203ENST00000539559 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.84■■□□□ 1.57
TMEM260-203ENST00000539559 R3HCC1Q9Y3T6 440 aaKnown RBP24.84■■□□□ 1.57
TMEM260-203ENST00000539559 ERC2O15083 957 aa24.84■■□□□ 1.57
TMEM260-203ENST00000539559 CWC22Q9HCG8 908 aaKnown RBP24.84■■□□□ 1.57
TMEM260-203ENST00000539559 PLEKHG3A1L390 1219 aa24.83■■□□□ 1.57
TMEM260-203ENST00000539559 ZMYND15Q9H091 742 aa24.83■■□□□ 1.57
TMEM260-203ENST00000539559 ITSN1Q15811 1721 aa24.83■■□□□ 1.57
TMEM260-203ENST00000539559 REC8O95072 547 aa24.83■■□□□ 1.57
TMEM260-203ENST00000539559 AKAP12Q02952 1782 aa24.83■■□□□ 1.56
TMEM260-203ENST00000539559 KIF24Q5T7B8 1368 aa24.82■■□□□ 1.56
TMEM260-203ENST00000539559 ADAMTSL3P82987 1691 aa24.82■■□□□ 1.56
TMEM260-203ENST00000539559 CHL1O00533 1208 aa24.82■■□□□ 1.56
TMEM260-203ENST00000539559 ZBTB7CA1YPR0 619 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 ANKLE2Q86XL3 938 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 TMX3Q96JJ7 454 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 ACEP12821 1306 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 FOXO3O43524 673 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 PDE1AP54750 535 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 PALD1Q9ULE6 856 aa24.81■■□□□ 1.56
TMEM260-203ENST00000539559 TPRNQ4KMQ1 711 aa24.8■■□□□ 1.56
TMEM260-203ENST00000539559 AATKQ6ZMQ8 1374 aa24.8■■□□□ 1.56
TMEM260-203ENST00000539559 HSP90AB2PQ58FF8 381 aa24.79■■□□□ 1.56
TMEM260-203ENST00000539559 TOPAZ1Q8N9V7 1692 aa24.79■■□□□ 1.56
TMEM260-203ENST00000539559 NECTIN2Q92692 538 aa24.78■■□□□ 1.56
TMEM260-203ENST00000539559 PDLIM2Q96JY6 352 aa24.78■■□□□ 1.56
TMEM260-203ENST00000539559 GDPD2Q9HCC8 539 aa24.78■■□□□ 1.56
TMEM260-203ENST00000539559 XRN1Q8IZH2 1706 aaKnown RBP24.77■■□□□ 1.56
TMEM260-203ENST00000539559 MPNDQ8N594 471 aa24.77■■□□□ 1.56
TMEM260-203ENST00000539559 KCNA6P17658 529 aa24.77■■□□□ 1.56
TMEM260-203ENST00000539559 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.77■■□□□ 1.56
TMEM260-203ENST00000539559 NOL7Q9UMY1 257 aaKnown RBP24.77■■□□□ 1.56
TMEM260-203ENST00000539559 TTC21BQ7Z4L5 1316 aa24.76■■□□□ 1.55
TMEM260-203ENST00000539559 LRSAM1Q6UWE0 723 aa24.76■■□□□ 1.55
TMEM260-203ENST00000539559 RILPL2Q969X0 211 aa24.76■■□□□ 1.55
TMEM260-203ENST00000539559 ZNF142P52746 1687 aaPredicted RBP24.75■■□□□ 1.55
TMEM260-203ENST00000539559 UPF3BQ9BZI7 483 aaKnown RBP24.75■■□□□ 1.55
TMEM260-203ENST00000539559 USP6P35125 1406 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 ANO2Q9NQ90 1003 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 PTPRCP08575 1304 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 TRIM6-TRIM34B2RNG4 842 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 PKNOX2Q96KN3 472 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 ARID3AQ99856 593 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 FAM13BQ9NYF5 915 aa24.74■■□□□ 1.55
TMEM260-203ENST00000539559 SETD1BQ9UPS6 1966 aaKnown RBP24.72■■□□□ 1.55
TMEM260-203ENST00000539559 HMMRO75330 724 aa24.72■■□□□ 1.55
TMEM260-203ENST00000539559 ESYT1Q9BSJ8 1104 aa24.72■■□□□ 1.55
TMEM260-203ENST00000539559 PNMA6EA0A0J9YXQ4 647 aa24.71■■□□□ 1.55
TMEM260-203ENST00000539559 UNC5CLQ8IV45 518 aa24.71■■□□□ 1.55
TMEM260-203ENST00000539559 TSPYL4Q9UJ04 414 aa24.71■■□□□ 1.55
TMEM260-203ENST00000539559 NRKQ7Z2Y5 1582 aa24.71■■□□□ 1.55
TMEM260-203ENST00000539559 GADD45BO75293 160 aaPredicted RBP24.7■■□□□ 1.54
TMEM260-203ENST00000539559 ZKSCAN5Q9Y2L8 839 aa24.7■■□□□ 1.54
TMEM260-203ENST00000539559 DTNBO60941 627 aa24.69■■□□□ 1.54
TMEM260-203ENST00000539559 IL25Q9H293 177 aa24.69■■□□□ 1.54
TMEM260-203ENST00000539559 PDCL3Q9H2J4 239 aa24.69■■□□□ 1.54
TMEM260-203ENST00000539559 BRD1O95696 1058 aa24.69■■□□□ 1.54
TMEM260-203ENST00000539559 NGDNQ8NEJ9 315 aaKnown RBP24.69■■□□□ 1.54
TMEM260-203ENST00000539559 OSBPL3Q9H4L5 887 aa24.69■■□□□ 1.54
TMEM260-203ENST00000539559 KIAA0232Q92628 1395 aa24.68■■□□□ 1.54
TMEM260-203ENST00000539559 ZNF500O60304 480 aaPredicted RBP24.68■■□□□ 1.54
TMEM260-203ENST00000539559 HS1BP3Q53T59 392 aa24.68■■□□□ 1.54
TMEM260-203ENST00000539559 MAP4K4O95819 1239 aaPredicted RBP24.68■■□□□ 1.54
TMEM260-203ENST00000539559 HAP1P54257 671 aaPredicted RBP24.68■■□□□ 1.54
TMEM260-203ENST00000539559 MTHFSDQ2M296 383 aaKnown RBP24.68■■□□□ 1.54
TMEM260-203ENST00000539559 LARP6Q9BRS8 491 aaKnown RBP24.68■■□□□ 1.54
TMEM260-203ENST00000539559 UQCRHLA0A096LP55 91 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 GNAI2P04899 355 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 UQCRHP07919 91 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 MX1P20591 662 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 CRB1P82279 1406 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 SSH2Q76I76 1423 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 ANKARQ7Z5J8 1434 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 TTC21AQ8NDW8 1320 aa24.67■■□□□ 1.54
TMEM260-203ENST00000539559 OVOS2A0A0J9YW53 1432 aa24.66■■□□□ 1.54
TMEM260-203ENST00000539559 OVOS2Q6IE36 1432 aa24.66■■□□□ 1.54
TMEM260-203ENST00000539559 CHMLP26374 656 aa24.66■■□□□ 1.54
TMEM260-203ENST00000539559 LRRCC1Q9C099 1032 aa24.66■■□□□ 1.54
TMEM260-203ENST00000539559 IL1RAPL2Q9NP60 686 aa24.66■■□□□ 1.54
TMEM260-203ENST00000539559 MAP3K19Q56UN5 1328 aa24.65■■□□□ 1.54
TMEM260-203ENST00000539559 SALL3Q9BXA9 1300 aa24.64■■□□□ 1.54
TMEM260-203ENST00000539559 PTMAP06454 111 aaKnown RBP24.64■■□□□ 1.53
TMEM260-203ENST00000539559 CCT4P50991 539 aaKnown RBP24.64■■□□□ 1.53
TMEM260-203ENST00000539559 FKBP5Q13451 457 aaPredicted RBP24.64■■□□□ 1.53
TMEM260-203ENST00000539559 MBD3O95983 291 aa24.63■■□□□ 1.53
TMEM260-203ENST00000539559 CUL4AQ13619 759 aa24.63■■□□□ 1.53
TMEM260-203ENST00000539559 RTF1Q92541 710 aaKnown RBP24.63■■□□□ 1.53
TMEM260-203ENST00000539559 ZNF830Q96NB3 372 aaPredicted RBP24.62■■□□□ 1.53
TMEM260-203ENST00000539559 TSPY26PQ9H489 355 aa24.62■■□□□ 1.53
TMEM260-203ENST00000539559 CHD2O14647 1828 aaKnown RBP24.62■■□□□ 1.53
TMEM260-203ENST00000539559 LRRFIP2Q9Y608 721 aaKnown RBP24.62■■□□□ 1.53
TMEM260-203ENST00000539559 MCCP23508 829 aa24.61■■□□□ 1.53
TMEM260-203ENST00000539559 NUTM1Q86Y26 1132 aa24.61■■□□□ 1.53
TMEM260-203ENST00000539559 CCDC39Q9UFE4 941 aa24.61■■□□□ 1.53
TMEM260-203ENST00000539559 USP48Q86UV5 1035 aa24.61■■□□□ 1.53
TMEM260-203ENST00000539559 RGPD8O14715 1765 aaPredicted RBP24.61■■□□□ 1.53
TMEM260-203ENST00000539559 USP31Q70CQ4 1352 aa24.6■■□□□ 1.53
TMEM260-203ENST00000539559 JARID2Q92833 1246 aaPredicted RBP24.6■■□□□ 1.53
TMEM260-203ENST00000539559 FLIIQ13045 1269 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms