RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 WDR43Q15061 677 aaKnown RBP eCLIP20.93■□□□□ 0.94
RPAIN-206ENST00000539417 ZNF827Q17R98 1081 aa20.93■□□□□ 0.94
RPAIN-206ENST00000539417 MCM10Q7L590 875 aa20.93■□□□□ 0.94
RPAIN-206ENST00000539417 SLC4A9Q96Q91 983 aa20.93■□□□□ 0.94
RPAIN-206ENST00000539417 SLC39A6Q13433 755 aa20.91■□□□□ 0.94
RPAIN-206ENST00000539417 SLC27A3Q5K4L6 730 aa20.91■□□□□ 0.94
RPAIN-206ENST00000539417 PDGFDQ9GZP0 370 aaPredicted RBP20.91■□□□□ 0.94
RPAIN-206ENST00000539417 SIPA1L3O60292 1781 aaPredicted RBP20.91■□□□□ 0.94
RPAIN-206ENST00000539417 CEMIPQ8WUJ3 1361 aa20.9■□□□□ 0.94
RPAIN-206ENST00000539417 NFE2L2Q16236 605 aa20.9■□□□□ 0.94
RPAIN-206ENST00000539417 SMARCC1Q92922 1105 aaPredicted RBP20.9■□□□□ 0.94
RPAIN-206ENST00000539417 LOC102724428A0A0B4J2F2 783 aa20.89■□□□□ 0.94
RPAIN-206ENST00000539417 SIK1P57059 783 aa20.89■□□□□ 0.94
RPAIN-206ENST00000539417 NBPF14Q5TI25 921 aa20.89■□□□□ 0.94
RPAIN-206ENST00000539417 MRS2Q9HD23 443 aa20.89■□□□□ 0.94
RPAIN-206ENST00000539417 SRCAPQ6ZRS2 3230 aa20.89■□□□□ 0.93
RPAIN-206ENST00000539417 TAF1LQ8IZX4 1826 aa20.89■□□□□ 0.93
RPAIN-206ENST00000539417 MAPK8IP3Q9UPT6 1336 aa20.89■□□□□ 0.93
RPAIN-206ENST00000539417 C5P01031 1676 aa20.88■□□□□ 0.93
RPAIN-206ENST00000539417 ITPK1Q13572 414 aa20.88■□□□□ 0.93
RPAIN-206ENST00000539417 AKT1S1Q96B36 256 aa20.88■□□□□ 0.93
RPAIN-206ENST00000539417 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
RPAIN-206ENST00000539417 SLC15A2Q16348 729 aa20.88■□□□□ 0.93
RPAIN-206ENST00000539417 PNISRQ8TF01 805 aaKnown RBP20.88■□□□□ 0.93
RPAIN-206ENST00000539417 RBM42Q9BTD8 480 aaKnown RBP20.88■□□□□ 0.93
RPAIN-206ENST00000539417 THUMPD2Q9BTF0 503 aaKnown RBP20.88■□□□□ 0.93
RPAIN-206ENST00000539417 TUBGCP6Q96RT7 1819 aa20.87■□□□□ 0.93
RPAIN-206ENST00000539417 PTCD1O75127 700 aaKnown RBP20.87■□□□□ 0.93
RPAIN-206ENST00000539417 SENP3-EIF4A1A0A087X0R7 540 aa20.86■□□□□ 0.93
RPAIN-206ENST00000539417 TMPOP42166 694 aaKnown RBP20.86■□□□□ 0.93
RPAIN-206ENST00000539417 LINC00116Q8NCU8 138 aa20.86■□□□□ 0.93
RPAIN-206ENST00000539417 RUNDC1Q96C34 613 aa20.86■□□□□ 0.93
RPAIN-206ENST00000539417 PNNQ9H307 717 aaKnown RBP20.86■□□□□ 0.93
RPAIN-206ENST00000539417 STK32BQ9NY57 414 aa20.86■□□□□ 0.93
RPAIN-206ENST00000539417 KCPQ6ZWJ8 1503 aa20.85■□□□□ 0.93
RPAIN-206ENST00000539417 KCNQ3O43525 872 aa20.85■□□□□ 0.93
RPAIN-206ENST00000539417 NEFMP07197 916 aa20.85■□□□□ 0.93
RPAIN-206ENST00000539417 SMIM5Q71RC9 77 aa20.85■□□□□ 0.93
RPAIN-206ENST00000539417 ATP6V1AP38606 617 aa20.84■□□□□ 0.93
RPAIN-206ENST00000539417 TEFQ10587 303 aa20.84■□□□□ 0.93
RPAIN-206ENST00000539417 AMIGO3Q86WK7 504 aa20.84■□□□□ 0.93
RPAIN-206ENST00000539417 RTF1Q92541 710 aaKnown RBP20.84■□□□□ 0.93
RPAIN-206ENST00000539417 C4BP0C0L5 1744 aa20.83■□□□□ 0.93
RPAIN-206ENST00000539417 RIPK4P57078 832 aa20.83■□□□□ 0.93
RPAIN-206ENST00000539417 NEUROD2Q15784 382 aa20.83■□□□□ 0.93
RPAIN-206ENST00000539417 CASZ1Q86V15 1759 aa20.83■□□□□ 0.93
RPAIN-206ENST00000539417 TJP1Q07157 1748 aa20.83■□□□□ 0.92
RPAIN-206ENST00000539417 UBR2Q8IWV8 1755 aa20.83■□□□□ 0.92
RPAIN-206ENST00000539417 HTATSF1O43719 755 aaKnown RBP20.82■□□□□ 0.92
RPAIN-206ENST00000539417 MIS18AQ9NYP9 233 aa20.81■□□□□ 0.92
RPAIN-206ENST00000539417 ZNF831Q5JPB2 1677 aa20.81■□□□□ 0.92
RPAIN-206ENST00000539417 TRIM35Q9UPQ4 493 aa20.81■□□□□ 0.92
RPAIN-206ENST00000539417 COL5A3P25940 1745 aaPredicted RBP20.8■□□□□ 0.92
RPAIN-206ENST00000539417 APAF1O14727 1248 aa20.8■□□□□ 0.92
RPAIN-206ENST00000539417 PNPLA7Q6ZV29 1317 aa20.79■□□□□ 0.92
RPAIN-206ENST00000539417 BTBD11A6QL63 1104 aa20.79■□□□□ 0.92
RPAIN-206ENST00000539417 ZNF790Q6PG37 636 aa20.79■□□□□ 0.92
RPAIN-206ENST00000539417 DIEXFQ68CQ4 756 aaKnown RBP20.78■□□□□ 0.92
RPAIN-206ENST00000539417 DNAJC10Q8IXB1 793 aa20.78■□□□□ 0.92
RPAIN-206ENST00000539417 ZNF496Q96IT1 587 aaPredicted RBP20.78■□□□□ 0.92
RPAIN-206ENST00000539417 TFCP2L1Q9NZI6 479 aa20.78■□□□□ 0.92
RPAIN-206ENST00000539417 QSER1Q2KHR3 1735 aa20.77■□□□□ 0.92
RPAIN-206ENST00000539417 CICQ96RK0 1608 aaPredicted RBP20.77■□□□□ 0.92
RPAIN-206ENST00000539417 UBR3Q6ZT12 1888 aa20.77■□□□□ 0.91
RPAIN-206ENST00000539417 MYH14Q7Z406 1995 aaKnown RBP20.76■□□□□ 0.91
RPAIN-206ENST00000539417 TAF7Q15545 349 aaPredicted RBP20.75■□□□□ 0.91
RPAIN-206ENST00000539417 COL23A1Q86Y22 540 aaPredicted RBP20.75■□□□□ 0.91
RPAIN-206ENST00000539417 FAM9BQ8IZU0 186 aa20.75■□□□□ 0.91
RPAIN-206ENST00000539417 PRAMEF22A3QJZ6 481 aa20.75■□□□□ 0.91
RPAIN-206ENST00000539417 ZBTB7AO95365 584 aa20.75■□□□□ 0.91
RPAIN-206ENST00000539417 TTC5Q8N0Z6 440 aa20.75■□□□□ 0.91
RPAIN-206ENST00000539417 AK7Q96M32 723 aa20.75■□□□□ 0.91
RPAIN-206ENST00000539417 KDM3BQ7LBC6 1761 aa20.74■□□□□ 0.91
RPAIN-206ENST00000539417 GNPATO15228 680 aa20.73■□□□□ 0.91
RPAIN-206ENST00000539417 PHF14O94880 888 aa20.73■□□□□ 0.91
RPAIN-206ENST00000539417 MIER1Q8N108 512 aa20.73■□□□□ 0.91
RPAIN-206ENST00000539417 HEG1Q9ULI3 1381 aa20.73■□□□□ 0.91
RPAIN-206ENST00000539417 CYP19A1P11511 503 aaPredicted RBP20.72■□□□□ 0.91
RPAIN-206ENST00000539417 CRKLP46109 303 aaKnown RBP20.72■□□□□ 0.91
RPAIN-206ENST00000539417 INTS5Q6P9B9 1019 aaKnown RBP20.72■□□□□ 0.91
RPAIN-206ENST00000539417 CNTNAP4Q9C0A0 1308 aa20.71■□□□□ 0.91
RPAIN-206ENST00000539417 ATF5Q9Y2D1 282 aaPredicted RBP20.71■□□□□ 0.91
RPAIN-206ENST00000539417 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.7■□□□□ 0.9
RPAIN-206ENST00000539417 LMOD3Q0VAK6 560 aa20.7■□□□□ 0.9
RPAIN-206ENST00000539417 VSIG10Q8N0Z9 540 aa20.7■□□□□ 0.9
RPAIN-206ENST00000539417 FMNL2Q96PY5 1086 aa20.7■□□□□ 0.9
RPAIN-206ENST00000539417 RC3H1Q5TC82 1133 aaKnown RBP20.69■□□□□ 0.9
RPAIN-206ENST00000539417 MSH5O43196 834 aa20.69■□□□□ 0.9
RPAIN-206ENST00000539417 LRP5O75197 1615 aa20.68■□□□□ 0.9
RPAIN-206ENST00000539417 ZBTB1Q9Y2K1 713 aa20.68■□□□□ 0.9
RPAIN-206ENST00000539417 USP16Q9Y5T5 823 aa20.68■□□□□ 0.9
RPAIN-206ENST00000539417 CCER2I3L3R5 266 aa20.67■□□□□ 0.9
RPAIN-206ENST00000539417 RPS6KA4O75676 772 aa20.67■□□□□ 0.9
RPAIN-206ENST00000539417 EIF4A1P60842 406 aaKnown RBP20.67■□□□□ 0.9
RPAIN-206ENST00000539417 CCDC87Q9NVE4 849 aa20.67■□□□□ 0.9
RPAIN-206ENST00000539417 TSPYL4Q9UJ04 414 aa20.67■□□□□ 0.9
RPAIN-206ENST00000539417 SALL2Q9Y467 1007 aaPredicted RBP20.67■□□□□ 0.9
RPAIN-206ENST00000539417 LAS1LQ9Y4W2 734 aaKnown RBP20.67■□□□□ 0.9
RPAIN-206ENST00000539417 SSFA2P28290 1259 aa20.66■□□□□ 0.9
RPAIN-206ENST00000539417 PTGER2P43116 358 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms