RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 KIF1BPQ96EK5 621 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 CEP152O94986 1710 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 PPRC1Q5VV67 1664 aaKnown RBP12.81□□□□□ -0.36
RTN3-208ENST00000537981 POLR3GO15318 223 aaPredicted RBP12.81□□□□□ -0.36
RTN3-208ENST00000537981 SYCP1Q15431 976 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 CT47A1Q5JQC4 288 aaPredicted RBP12.81□□□□□ -0.36
RTN3-208ENST00000537981 FAM184AQ8NB25 1140 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 FUCA2Q9BTY2 467 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 GTF2A1P52655 376 aaPredicted RBP12.8□□□□□ -0.36
RTN3-208ENST00000537981 PLEKHM2Q8IWE5 1019 aa12.8□□□□□ -0.36
RTN3-208ENST00000537981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.8□□□□□ -0.36
RTN3-208ENST00000537981 GPATCH8Q9UKJ3 1502 aaKnown RBP12.8□□□□□ -0.36
RTN3-208ENST00000537981 ST18O60284 1047 aa12.8□□□□□ -0.36
RTN3-208ENST00000537981 NEK4P51957 841 aa12.8□□□□□ -0.36
RTN3-208ENST00000537981 ARID5BQ14865 1188 aa12.8□□□□□ -0.36
RTN3-208ENST00000537981 SYAP1Q96A49 352 aaPredicted RBP12.8□□□□□ -0.36
RTN3-208ENST00000537981 SYTL4Q96C24 671 aaPredicted RBP12.8□□□□□ -0.36
RTN3-208ENST00000537981 ABCA9Q8IUA7 1624 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 RNF17Q9BXT8 1623 aaKnown RBP12.79□□□□□ -0.36
RTN3-208ENST00000537981 APPP05067 770 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 SART3Q15020 963 aaKnown RBP12.79□□□□□ -0.36
RTN3-208ENST00000537981 KRBA2Q6ZNG9 492 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 RASSF4Q9H2L5 321 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 YY1AP1Q9H869 796 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 EFCC1Q9HA90 598 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 ZCCHC17Q9NP64 241 aaKnown RBP12.79□□□□□ -0.36
RTN3-208ENST00000537981 NOS1P29475 1434 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 MYO1CO00159 1063 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 CCDC183Q5T5S1 534 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 GPATCH11Q8N954 259 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 FHOD1Q9Y613 1164 aa12.79□□□□□ -0.36
RTN3-208ENST00000537981 CDC42BPAQ5VT25 1732 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 C9orf84Q5VXU9 1444 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 PLA2G4AP47712 749 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 POLR3AO14802 1390 aaPredicted RBP12.78□□□□□ -0.36
RTN3-208ENST00000537981 FANCAO15360 1455 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 CC2D2BQ6DHV5 1058 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 LUZP1Q86V48 1076 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 SMARCE1Q969G3 411 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 PALD1Q9ULE6 856 aa12.78□□□□□ -0.36
RTN3-208ENST00000537981 IQGAP1P46940 1657 aa12.77□□□□□ -0.36
RTN3-208ENST00000537981 PHF14O94880 888 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 MX1P20591 662 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 TPD52L1Q16890 204 aaPredicted RBP12.77□□□□□ -0.37
RTN3-208ENST00000537981 CCDC144BQ3MJ40 725 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 CCDC144CPQ8IYA2 1237 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 SRCIN1Q9C0H9 1055 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 TSPYL1Q9H0U9 437 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 ATG3Q9NT62 314 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 EFCAB2Q5VUJ9 269 aa12.77□□□□□ -0.37
RTN3-208ENST00000537981 ZBTB7BO15156 539 aaPredicted RBP12.76□□□□□ -0.37
RTN3-208ENST00000537981 SDSP20132 328 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 CCDC27Q2M243 656 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 CEP135Q66GS9 1140 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 CACTINQ8WUQ7 758 aaKnown RBP12.76□□□□□ -0.37
RTN3-208ENST00000537981 LARP6Q9BRS8 491 aaKnown RBP12.76□□□□□ -0.37
RTN3-208ENST00000537981 PLCH2O75038 1416 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 ARHGAP5Q13017 1502 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 FIBPO43427 364 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 ERCC6LQ2NKX8 1250 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 TTC22Q5TAA0 569 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 ICE2Q659A1 982 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 ZSCAN25Q6NSZ9 544 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 AFAP1Q8N556 730 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 DRC1Q96MC2 740 aa12.76□□□□□ -0.37
RTN3-208ENST00000537981 PTPRCP08575 1304 aa12.75□□□□□ -0.37
RTN3-208ENST00000537981 KANK1Q14678 1352 aa12.75□□□□□ -0.37
RTN3-208ENST00000537981 BMS1Q14692 1282 aaKnown RBP12.75□□□□□ -0.37
RTN3-208ENST00000537981 CHMP3Q9Y3E7 222 aa12.75□□□□□ -0.37
RTN3-208ENST00000537981 CLTCL1P53675 1640 aa12.75□□□□□ -0.37
RTN3-208ENST00000537981 MTHFSP49914 203 aa12.75□□□□□ -0.37
RTN3-208ENST00000537981 HNRNPMP52272 730 aaKnown RBP eCLIP12.75□□□□□ -0.37
RTN3-208ENST00000537981 REC8O95072 547 aa12.74□□□□□ -0.37
RTN3-208ENST00000537981 CCDC191Q8NCU4 936 aa12.74□□□□□ -0.37
RTN3-208ENST00000537981 UPF3BQ9BZI7 483 aaKnown RBP12.74□□□□□ -0.37
RTN3-208ENST00000537981 TRMT1Q9NXH9 659 aaKnown RBP12.74□□□□□ -0.37
RTN3-208ENST00000537981 KNDC1Q76NI1 1749 aa12.74□□□□□ -0.37
RTN3-208ENST00000537981 EIF2AK4Q9P2K8 1649 aaKnown RBP12.74□□□□□ -0.37
RTN3-208ENST00000537981 PNMA6AP0CW24 399 aaPredicted RBP12.73□□□□□ -0.37
RTN3-208ENST00000537981 U2AF1L5P0DN76 240 aaPredicted RBP12.73□□□□□ -0.37
RTN3-208ENST00000537981 CLCN6P51797 869 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 U2AF1Q01081 240 aaKnown RBP eCLIP12.73□□□□□ -0.371e-7■■■□□ 14.6
RTN3-208ENST00000537981 DRC7Q8IY82 874 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 LRRFIP2Q9Y608 721 aaKnown RBP12.73□□□□□ -0.37
RTN3-208ENST00000537981 CASQ1P31415 396 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 E2F4Q16254 413 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 PACS2Q86VP3 889 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 GCC1Q96CN9 775 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 ATP10AO60312 1499 aa12.73□□□□□ -0.37
RTN3-208ENST00000537981 RPAP1Q9BWH6 1393 aaPredicted RBP12.73□□□□□ -0.37
RTN3-208ENST00000537981 ANKRD65E5RJM6 399 aa12.72□□□□□ -0.37
RTN3-208ENST00000537981 SEC31AO94979 1220 aaKnown RBP12.72□□□□□ -0.37
RTN3-208ENST00000537981 NKX1-1Q15270 411 aaPredicted RBP12.72□□□□□ -0.37
RTN3-208ENST00000537981 CAMK4Q16566 473 aa12.72□□□□□ -0.37
RTN3-208ENST00000537981 PAXBP1Q9Y5B6 917 aa12.72□□□□□ -0.37
RTN3-208ENST00000537981 KDM5AP29375 1690 aaKnown RBP12.72□□□□□ -0.37
RTN3-208ENST00000537981 TSHZ3Q63HK5 1081 aa12.72□□□□□ -0.37
RTN3-208ENST00000537981 MORC1Q86VD1 984 aa12.72□□□□□ -0.37
RTN3-208ENST00000537981 DNAJC21Q5F1R6 531 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms