RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 GTF2A1P52655 376 aaPredicted RBP6.37□□□□□ -1.39
PTPRD-213ENST00000537002 MUM1L1Q5H9M0 696 aa6.37□□□□□ -1.39
PTPRD-213ENST00000537002 CAGE1Q8TC20 777 aa6.37□□□□□ -1.39
PTPRD-213ENST00000537002 SDF4Q9BRK5 362 aa6.37□□□□□ -1.39
PTPRD-213ENST00000537002 NUP62CLQ9H1M0 184 aa6.37□□□□□ -1.39
PTPRD-213ENST00000537002 PTPN14Q15678 1187 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 TMEM87AQ8NBN3 555 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 UBXN4Q92575 508 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 PLCD4Q9BRC7 762 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 GIMAP7Q8NHV1 300 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 ERO1AQ96HE7 468 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 RAPGEF3O95398 923 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 PCMTD1Q96MG8 357 aaPredicted RBP6.36□□□□□ -1.39
PTPRD-213ENST00000537002 TTC37Q6PGP7 1564 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 CFAP74Q9C0B2 1584 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 GPATCH8Q9UKJ3 1502 aaKnown RBP6.36□□□□□ -1.39
PTPRD-213ENST00000537002 CFAP65Q6ZU64 1925 aaKnown RBP6.36□□□□□ -1.39
PTPRD-213ENST00000537002 ARHGAP5Q13017 1502 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 SSH2Q76I76 1423 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 CLSTN1O94985 981 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 KIAA1524Q8TCG1 905 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 CHMP4CQ96CF2 233 aa6.36□□□□□ -1.39
PTPRD-213ENST00000537002 TRMT1Q9NXH9 659 aaKnown RBP6.36□□□□□ -1.39
PTPRD-213ENST00000537002 LRRIQ1Q96JM4 1722 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 TUBBP07437 444 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 CLIP2Q9UDT6 1046 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 DISP3Q9P2K9 1392 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 RNF17Q9BXT8 1623 aaKnown RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 KDM5AP29375 1690 aaKnown RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 KINO60870 393 aaKnown RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 IFIT2P09913 472 aaKnown RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 JAKMIP3Q5VZ66 844 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 SLC26A8Q96RN1 970 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 TOMM22Q9NS69 142 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 NEURL4Q96JN8 1562 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 ERLIN1O75477 346 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 KIAA0754O94854 1291 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 MAP4K4O95819 1239 aaPredicted RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 MYCBPQ99417 103 aaPredicted RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 KDM4AO75164 1064 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 EIF3JO75822 258 aaKnown RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 TTC12Q9H892 705 aaPredicted RBP6.35□□□□□ -1.39
PTPRD-213ENST00000537002 RAPGEF6Q8TEU7 1601 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 UBE2HP62256 183 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 STK3Q13188 491 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 OLFM4Q6UX06 510 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 TMEM57Q8N5G2 664 aa6.35□□□□□ -1.39
PTPRD-213ENST00000537002 MX1P20591 662 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 GNAI1P63096 354 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 ANKLE2Q86XL3 938 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 TMX1Q9H3N1 280 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 IPO7O95373 1038 aaKnown RBP6.34□□□□□ -1.39
PTPRD-213ENST00000537002 HMOX1P09601 288 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 KIF18AQ8NI77 898 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 CENPHQ9H3R5 247 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 SERPINC1P01008 464 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 LMAN1P49257 510 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 MAP3K11Q16584 847 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 LMOD2Q6P5Q4 547 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 SPATA32Q96LK8 384 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 RBM28Q9NW13 759 aaKnown RBP6.34□□□□□ -1.39
PTPRD-213ENST00000537002 DUOX2Q9NRD8 1548 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 RAD50Q92878 1312 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 TULP2O00295 520 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 KIF1CO43896 1103 aaKnown RBP6.34□□□□□ -1.39
PTPRD-213ENST00000537002 MTHFSP49914 203 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 PDCP20941 246 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 CDR1P51861 262 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 FAM200AQ8TCP9 573 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 TSC1Q92574 1164 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.34□□□□□ -1.39
PTPRD-213ENST00000537002 CEP135Q66GS9 1140 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 CTNNA3Q9UI47 895 aa6.34□□□□□ -1.39
PTPRD-213ENST00000537002 GSDMDP57764 484 aa6.34□□□□□ -1.4
PTPRD-213ENST00000537002 U2AF2P26368 475 aaKnown RBP eCLIP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 KRT85P78386 507 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 MEX3CQ5U5Q3 659 aaKnown RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 KIAA1210Q9ULL0 1709 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 CPLX1O14810 134 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 IRX5P78411 483 aaPredicted RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 CKAP2LQ8IYA6 745 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 C17orf53Q8N3J3 647 aaPredicted RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 BRD1O95696 1058 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 HCLS1P14317 486 aaPredicted RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 FERMT3Q86UX7 667 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 GGNBP2Q9H3C7 697 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 ZBTB40Q9NUA8 1239 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 AFAP1Q8N556 730 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 CHRM1P11229 460 aaPredicted RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 URI1O94763 535 aaPredicted RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 SYNE3Q6ZMZ3 975 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 TBC1D9Q6ZT07 1266 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 CCDC191Q8NCU4 936 aa6.33□□□□□ -1.4
PTPRD-213ENST00000537002 RBM42Q9BTD8 480 aaKnown RBP6.33□□□□□ -1.4
PTPRD-213ENST00000537002 A2MP01023 1474 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 NAP1L1P55209 391 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 UPF3BQ9BZI7 483 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 LARP1BQ659C4 914 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 RPAP2Q8IXW5 612 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms