RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 USHBP1Q8N6Y0 703 aa16.23■□□□□ 0.19
LDLR-203ENST00000535915 RABEP1Q15276 862 aa16.22■□□□□ 0.19
LDLR-203ENST00000535915 TAF7Q15545 349 aaPredicted RBP16.22■□□□□ 0.19
LDLR-203ENST00000535915 GBP4Q96PP9 640 aa16.22■□□□□ 0.19
LDLR-203ENST00000535915 GOLGA6L3A6NEY3 463 aa16.22■□□□□ 0.19
LDLR-203ENST00000535915 EXOC6BQ9Y2D4 811 aa16.22■□□□□ 0.19
LDLR-203ENST00000535915 PHF8Q9UPP1 1060 aa16.21■□□□□ 0.19
LDLR-203ENST00000535915 N4BP2Q86UW6 1770 aaPredicted RBP16.21■□□□□ 0.19
LDLR-203ENST00000535915 GNAI3P08754 354 aa16.21■□□□□ 0.19
LDLR-203ENST00000535915 PDE1AP54750 535 aa16.2■□□□□ 0.18
LDLR-203ENST00000535915 SOS1Q07889 1333 aaPredicted RBP16.19■□□□□ 0.18
LDLR-203ENST00000535915 RBM33Q96EV2 1170 aaKnown RBP16.19■□□□□ 0.18
LDLR-203ENST00000535915 OSBPL3Q9H4L5 887 aa16.19■□□□□ 0.18
LDLR-203ENST00000535915 BABAM1Q9NWV8 329 aa16.19■□□□□ 0.18
LDLR-203ENST00000535915 REC8O95072 547 aa16.19■□□□□ 0.18
LDLR-203ENST00000535915 LRRCC1Q9C099 1032 aa16.18■□□□□ 0.18
LDLR-203ENST00000535915 RGPD2P0DJD1 1756 aa16.18■□□□□ 0.18
LDLR-203ENST00000535915 TUBGCP6Q96RT7 1819 aa16.18■□□□□ 0.18
LDLR-203ENST00000535915 PNMA6EA0A0J9YXQ4 647 aa16.18■□□□□ 0.18
LDLR-203ENST00000535915 FSD2A1L4K1 749 aa16.18■□□□□ 0.18
LDLR-203ENST00000535915 ZBTB7CA1YPR0 619 aa16.17■□□□□ 0.18
LDLR-203ENST00000535915 ERC2O15083 957 aa16.17■□□□□ 0.18
LDLR-203ENST00000535915 HDGFL1Q5TGJ6 251 aa16.17■□□□□ 0.18
LDLR-203ENST00000535915 ATP8B2P98198 1209 aa16.17■□□□□ 0.18
LDLR-203ENST00000535915 IP6K1Q92551 441 aa16.17■□□□□ 0.18
LDLR-203ENST00000535915 LRRFIP2Q9Y608 721 aaKnown RBP16.17■□□□□ 0.18
LDLR-203ENST00000535915 XRCC6P12956 609 aaKnown RBP eCLIP16.16■□□□□ 0.18
LDLR-203ENST00000535915 TSHZ3Q63HK5 1081 aa16.16■□□□□ 0.18
LDLR-203ENST00000535915 ANKLE2Q86XL3 938 aa16.16■□□□□ 0.18
LDLR-203ENST00000535915 SSFA2P28290 1259 aa16.16■□□□□ 0.18
LDLR-203ENST00000535915 PKNOX2Q96KN3 472 aa16.16■□□□□ 0.18
LDLR-203ENST00000535915 PXDNLA1KZ92 1463 aa16.16■□□□□ 0.18
LDLR-203ENST00000535915 PSME1Q06323 249 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 ST18O60284 1047 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 ESCO1Q5FWF5 840 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 NBPF6Q5VWK0 638 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 NBPF4Q96M43 638 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 PHAXQ9H814 394 aaKnown RBP16.15■□□□□ 0.18
LDLR-203ENST00000535915 NFAT5O94916 1531 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 MX1P20591 662 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 PTMSP20962 102 aa16.15■□□□□ 0.18
LDLR-203ENST00000535915 IBTKQ9P2D0 1353 aaPredicted RBP16.14■□□□□ 0.17
LDLR-203ENST00000535915 UBTFL1P0CB47 393 aaPredicted RBP16.14■□□□□ 0.17
LDLR-203ENST00000535915 USP44Q9H0E7 712 aa16.14■□□□□ 0.17
LDLR-203ENST00000535915 SALL3Q9BXA9 1300 aa16.14■□□□□ 0.17
LDLR-203ENST00000535915 EIF2S2P20042 333 aaKnown RBP16.14■□□□□ 0.17
LDLR-203ENST00000535915 SKOR2Q2VWA4 1001 aaPredicted RBP16.14■□□□□ 0.17
LDLR-203ENST00000535915 CEMIPQ8WUJ3 1361 aa16.13■□□□□ 0.17
LDLR-203ENST00000535915 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
LDLR-203ENST00000535915 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
LDLR-203ENST00000535915 LGR6Q9HBX8 967 aa16.13■□□□□ 0.17
LDLR-203ENST00000535915 GOLGA6L22H0YM25 854 aa16.12■□□□□ 0.17
LDLR-203ENST00000535915 FAM43AQ8N2R8 423 aa16.12■□□□□ 0.17
LDLR-203ENST00000535915 KCNH5Q8NCM2 988 aa16.12■□□□□ 0.17
LDLR-203ENST00000535915 TRIM6-TRIM34B2RNG4 842 aa16.12■□□□□ 0.17
LDLR-203ENST00000535915 MRE11P49959 708 aa16.11■□□□□ 0.17
LDLR-203ENST00000535915 RILPL2Q969X0 211 aa16.11■□□□□ 0.17
LDLR-203ENST00000535915 PANK2Q9BZ23 570 aa16.11■□□□□ 0.17
LDLR-203ENST00000535915 LMO7Q8WWI1 1683 aa16.11■□□□□ 0.17
LDLR-203ENST00000535915 PLEKHG5O94827 1062 aa16.11■□□□□ 0.17
LDLR-203ENST00000535915 EIF4A1P60842 406 aaKnown RBP16.11■□□□□ 0.17
LDLR-203ENST00000535915 ZNF142P52746 1687 aaPredicted RBP16.11■□□□□ 0.17
LDLR-203ENST00000535915 MED1Q15648 1581 aaPredicted RBP16.11■□□□□ 0.17
LDLR-203ENST00000535915 LRRC59Q96AG4 307 aaKnown RBP16.1■□□□□ 0.17
LDLR-203ENST00000535915 SRCIN1Q9C0H9 1055 aa16.1■□□□□ 0.17
LDLR-203ENST00000535915 ADGRL3Q9HAR2 1447 aa16.1■□□□□ 0.17
LDLR-203ENST00000535915 NUCB2P80303 420 aa16.1■□□□□ 0.17
LDLR-203ENST00000535915 ESYT1Q9BSJ8 1104 aa16.1■□□□□ 0.17
LDLR-203ENST00000535915 BAG4O95429 457 aaKnown RBP16.09■□□□□ 0.17
LDLR-203ENST00000535915 TEFQ10587 303 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 CLEC17AQ6ZS10 378 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 PHRF1Q9P1Y6 1649 aaKnown RBP16.09■□□□□ 0.17
LDLR-203ENST00000535915 ZNF530Q6P9A1 599 aaPredicted RBP16.09■□□□□ 0.17
LDLR-203ENST00000535915 GRPEL1Q9HAV7 217 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 IL1RAPL2Q9NP60 686 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 CHPF2Q9P2E5 772 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 SSH3Q8TE77 659 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 STAP2Q9UGK3 403 aa16.09■□□□□ 0.17
LDLR-203ENST00000535915 ISY1Q9ULR0 285 aaKnown RBP16.09■□□□□ 0.17
LDLR-203ENST00000535915 PPP1R42Q7Z4L9 355 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 CWC22Q9HCG8 908 aaKnown RBP16.08■□□□□ 0.16
LDLR-203ENST00000535915 BTBD11A6QL63 1104 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 KCNQ3O43525 872 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 HOXB7P09629 217 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 CHMLP26374 656 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 AKAP4Q5JQC9 854 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 MPRIPQ6WCQ1 1025 aa16.08■□□□□ 0.16
LDLR-203ENST00000535915 SURF6O75683 361 aaKnown RBP16.07■□□□□ 0.16
LDLR-203ENST00000535915 MCCP23508 829 aa16.07■□□□□ 0.16
LDLR-203ENST00000535915 GLIPR1L2Q4G1C9 344 aa16.07■□□□□ 0.16
LDLR-203ENST00000535915 PLEKHO1Q53GL0 409 aaPredicted RBP16.07■□□□□ 0.16
LDLR-203ENST00000535915 CHMP4AQ9BY43 222 aa16.07■□□□□ 0.16
LDLR-203ENST00000535915 NEK4P51957 841 aa16.07■□□□□ 0.16
LDLR-203ENST00000535915 XPCQ01831 940 aaPredicted RBP16.07■□□□□ 0.16
LDLR-203ENST00000535915 ZGPATQ8N5A5 531 aaKnown RBP16.07■□□□□ 0.16
LDLR-203ENST00000535915 ANO2Q9NQ90 1003 aa16.07■□□□□ 0.16
LDLR-203ENST00000535915 PI4KAP2A4QPH2 592 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 LMOD2Q6P5Q4 547 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 PI4KAP1Q8N8J0 262 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 DNAAF4Q8WXU2 420 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms