RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 CCDC155Q8N6L0 562 aa10.38□□□□□ -0.75
PRKDC-205ENST00000535375 DNAAF2Q9NVR5 837 aaKnown RBP10.38□□□□□ -0.75
PRKDC-205ENST00000535375 WASLO00401 505 aaPredicted RBP10.37□□□□□ -0.75
PRKDC-205ENST00000535375 BACH1O14867 736 aa10.37□□□□□ -0.75
PRKDC-205ENST00000535375 PPFIA3O75145 1194 aa10.37□□□□□ -0.75
PRKDC-205ENST00000535375 INSM1Q01101 510 aaPredicted RBP10.37□□□□□ -0.75
PRKDC-205ENST00000535375 TAS1R3Q7RTX0 852 aa10.37□□□□□ -0.75
PRKDC-205ENST00000535375 RASA1P20936 1047 aa10.36□□□□□ -0.75
PRKDC-205ENST00000535375 LARP1Q6PKG0 1096 aaKnown RBP10.36□□□□□ -0.75
PRKDC-205ENST00000535375 TPCN2Q8NHX9 752 aa10.36□□□□□ -0.75
PRKDC-205ENST00000535375 CCDC97Q96F63 343 aaPredicted RBP10.36□□□□□ -0.75
PRKDC-205ENST00000535375 HRH3Q9Y5N1 445 aa10.36□□□□□ -0.75
PRKDC-205ENST00000535375 SLC35F4A4IF30 521 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 ARID3CA6NKF2 412 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 TMEM229AB2RXF0 380 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 SPATA31C2B4DYI2 1134 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 SMTNP53814 917 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 CCDC102BQ68D86 513 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 NBPF10Q6P3W6 841 aaKnown RBP10.35□□□□□ -0.75
PRKDC-205ENST00000535375 LARGE2Q8N3Y3 721 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 NBPF15Q8N660 670 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.35□□□□□ -0.75
PRKDC-205ENST00000535375 ZNF594Q96JF6 807 aaPredicted RBP10.35□□□□□ -0.75
PRKDC-205ENST00000535375 VRTNQ9H8Y1 702 aa10.35□□□□□ -0.75
PRKDC-205ENST00000535375 CLDN10P78369 228 aa10.34□□□□□ -0.75
PRKDC-205ENST00000535375 WDR44Q5JSH3 913 aa10.34□□□□□ -0.75
PRKDC-205ENST00000535375 FHDC1Q9C0D6 1143 aaPredicted RBP10.34□□□□□ -0.75
PRKDC-205ENST00000535375 TIMMDC1Q9NPL8 285 aa10.34□□□□□ -0.75
PRKDC-205ENST00000535375 ZNF358Q9NW07 568 aa10.34□□□□□ -0.75
PRKDC-205ENST00000535375 ZBTB7BO15156 539 aaPredicted RBP10.33□□□□□ -0.76
PRKDC-205ENST00000535375 RFX1P22670 979 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 GMPRP36959 345 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 PHKA2P46019 1235 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 PPARGC1BQ86YN6 1023 aaKnown RBP10.33□□□□□ -0.76
PRKDC-205ENST00000535375 SLC4A9Q96Q91 983 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 SERPINA10Q9UK55 444 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 ERBB4Q15303 1308 aa10.33□□□□□ -0.76
PRKDC-205ENST00000535375 A6NJY4 79 aa10.32□□□□□ -0.76
PRKDC-205ENST00000535375 CFAP70Q5T0N1 1121 aa10.32□□□□□ -0.76
PRKDC-205ENST00000535375 RHBDD1Q8TEB9 315 aa10.32□□□□□ -0.76
PRKDC-205ENST00000535375 GAS2L1Q99501 681 aaPredicted RBP10.32□□□□□ -0.76
PRKDC-205ENST00000535375 SENP3-EIF4A1A0A087X0R7 540 aa10.31□□□□□ -0.76
PRKDC-205ENST00000535375 ITGA6P23229 1130 aa10.31□□□□□ -0.76
PRKDC-205ENST00000535375 KANK4Q5T7N3 995 aaPredicted RBP10.31□□□□□ -0.76
PRKDC-205ENST00000535375 KIAA1024Q9UPX6 916 aa10.31□□□□□ -0.76
PRKDC-205ENST00000535375 DYRK1BQ9Y463 629 aa10.31□□□□□ -0.76
PRKDC-205ENST00000535375 CDK2AP1O14519 115 aa10.3□□□□□ -0.76
PRKDC-205ENST00000535375 RIPOR1Q6ZS17 1223 aa10.3□□□□□ -0.76
PRKDC-205ENST00000535375 NIFKQ9BYG3 293 aaKnown RBP10.3□□□□□ -0.76
PRKDC-205ENST00000535375 C4orf17Q53FE4 359 aa10.29□□□□□ -0.76
PRKDC-205ENST00000535375 SIX5Q8N196 739 aa10.29□□□□□ -0.76
PRKDC-205ENST00000535375 STK17AQ9UEE5 414 aa10.29□□□□□ -0.76
PRKDC-205ENST00000535375 CDC14CA4D256 554 aa10.28□□□□□ -0.76
PRKDC-205ENST00000535375 CDCA8Q53HL2 280 aa10.28□□□□□ -0.76
PRKDC-205ENST00000535375 CABP1Q9NZU7 370 aa10.28□□□□□ -0.76
PRKDC-205ENST00000535375 A0A1B0GTH6 734 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 FAM196BA6NMK8 535 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 F11P03951 625 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 VSIG8P0DPA2 414 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 PLA2G4AP47712 749 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 SEC13P55735 322 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 MTFR1Q15390 333 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 CRTC2Q53ET0 693 aaPredicted RBP10.27□□□□□ -0.77
PRKDC-205ENST00000535375 TNS4Q8IZW8 715 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 VWA5B2Q8N398 1253 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 AIDAQ96BJ3 306 aa10.27□□□□□ -0.77
PRKDC-205ENST00000535375 SCHIP1Q9P0W5 487 aaPredicted RBP10.27□□□□□ -0.77
PRKDC-205ENST00000535375 SFI1A8K8P3 1242 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L15C9J2P7 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L10C9JJH3 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L13C9JLJ4 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L12C9JPN9 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L11C9JVI0 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L21D6R901 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L18D6R9N7 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L22D6RA61 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L17D6RBQ6 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L19D6RCP7 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L20D6RJB6 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 H7C1W4 665 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 USP17L24Q0WX57 530 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 PTK7Q13308 1070 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 SV2AQ7L0J3 742 aa10.26□□□□□ -0.77
PRKDC-205ENST00000535375 M0R2N6 131 aa10.25□□□□□ -0.77
PRKDC-205ENST00000535375 CSB-PGBD3P0DP91 1061 aa10.25□□□□□ -0.77
PRKDC-205ENST00000535375 ANKMY2Q8IV38 441 aa10.25□□□□□ -0.77
PRKDC-205ENST00000535375 PGBD3Q8N328 593 aa10.25□□□□□ -0.77
PRKDC-205ENST00000535375 NANOS1Q8WY41 292 aaKnown RBP10.25□□□□□ -0.77
PRKDC-205ENST00000535375 GPAMQ9HCL2 828 aa10.25□□□□□ -0.77
PRKDC-205ENST00000535375 DPYDQ12882 1025 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 FOXR1Q6PIV2 292 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 SLC9A9Q8IVB4 645 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 TRIM22Q8IYM9 498 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 TSEN2Q8NCE0 465 aaKnown RBP10.24□□□□□ -0.77
PRKDC-205ENST00000535375 GMCL1Q96IK5 515 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 HINFPQ9BQA5 517 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 CHMP3Q9Y3E7 222 aa10.24□□□□□ -0.77
PRKDC-205ENST00000535375 NBPF1Q3BBV0 1214 aa10.23□□□□□ -0.77
PRKDC-205ENST00000535375 CCDC82Q8N4S0 544 aa10.23□□□□□ -0.77
PRKDC-205ENST00000535375 FAM200AQ8TCP9 573 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms