RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 CARNS1A5YM72 827 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 MEN1O00255 615 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 UPP2O95045 317 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 BMP2P12643 396 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 CNKSR1Q969H4 720 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 ESYT1Q9BSJ8 1104 aa12.15□□□□□ -0.46
CASP4-213ENST00000534356 SPINT1O43278 529 aa12.14□□□□□ -0.47
CASP4-213ENST00000534356 PURBQ96QR8 312 aaKnown RBP12.14□□□□□ -0.47
CASP4-213ENST00000534356 INSM2Q96T92 566 aaPredicted RBP12.14□□□□□ -0.47
CASP4-213ENST00000534356 DACH1Q9UI36 760 aa12.14□□□□□ -0.47
CASP4-213ENST00000534356 HRH3Q9Y5N1 445 aa12.14□□□□□ -0.47
CASP4-213ENST00000534356 TMEM88BA6NKF7 163 aa12.13□□□□□ -0.47
CASP4-213ENST00000534356 FAM69CQ0P6D2 419 aa12.13□□□□□ -0.47
CASP4-213ENST00000534356 TSEN2Q8NCE0 465 aaKnown RBP12.13□□□□□ -0.47
CASP4-213ENST00000534356 Q6ZNB5 142 aa12.12□□□□□ -0.47
CASP4-213ENST00000534356 NLRP3Q96P20 1036 aa12.12□□□□□ -0.47
CASP4-213ENST00000534356 SLC4A9Q96Q91 983 aa12.12□□□□□ -0.47
CASP4-213ENST00000534356 M0R2N6 131 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 BACH1O14867 736 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 LGR5O75473 907 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 CENPCQ03188 943 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 SCARF1Q14162 830 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 ATP13A2Q9NQ11 1180 aa12.11□□□□□ -0.47
CASP4-213ENST00000534356 CTSOP43234 321 aaPredicted RBP12.1□□□□□ -0.47
CASP4-213ENST00000534356 HOMEZQ8IX15 550 aa12.1□□□□□ -0.47
CASP4-213ENST00000534356 TNS4Q8IZW8 715 aa12.1□□□□□ -0.47
CASP4-213ENST00000534356 ZFP42Q96MM3 310 aa12.1□□□□□ -0.47
CASP4-213ENST00000534356 POLMQ9NP87 494 aaPredicted RBP12.1□□□□□ -0.47
CASP4-213ENST00000534356 LCE2BO14633 110 aa12.09□□□□□ -0.47
CASP4-213ENST00000534356 SMTNP53814 917 aa12.09□□□□□ -0.47
CASP4-213ENST00000534356 TLR1Q15399 786 aa12.09□□□□□ -0.47
CASP4-213ENST00000534356 HINFPQ9BQA5 517 aa12.09□□□□□ -0.47
CASP4-213ENST00000534356 FHDC1Q9C0D6 1143 aaPredicted RBP12.09□□□□□ -0.47
CASP4-213ENST00000534356 USTQ9Y2C2 406 aa12.09□□□□□ -0.47
CASP4-213ENST00000534356 EPHA4P54764 986 aa12.08□□□□□ -0.48
CASP4-213ENST00000534356 FOXD4L5Q5VV16 416 aaPredicted RBP12.08□□□□□ -0.48
CASP4-213ENST00000534356 A6NJY4 79 aa12.07□□□□□ -0.48
CASP4-213ENST00000534356 RNF144AP50876 292 aaPredicted RBP12.07□□□□□ -0.48
CASP4-213ENST00000534356 SWI5Q1ZZU3 235 aa12.07□□□□□ -0.48
CASP4-213ENST00000534356 SLAIN2Q9P270 581 aa12.07□□□□□ -0.48
CASP4-213ENST00000534356 MTFR1Q15390 333 aa12.06□□□□□ -0.48
CASP4-213ENST00000534356 GPC1P35052 558 aa12.05□□□□□ -0.48
CASP4-213ENST00000534356 GRIP2Q9C0E4 1043 aa12.05□□□□□ -0.48
CASP4-213ENST00000534356 SCHIP1Q9P0W5 487 aaPredicted RBP12.05□□□□□ -0.48
CASP4-213ENST00000534356 USP3Q9Y6I4 520 aa12.05□□□□□ -0.48
CASP4-213ENST00000534356 SOS2Q07890 1332 aaPredicted RBP12.05□□□□□ -0.48
CASP4-213ENST00000534356 TTLL8A6PVC2 850 aa12.04□□□□□ -0.48
CASP4-213ENST00000534356 FOXK2Q01167 660 aa12.04□□□□□ -0.48
CASP4-213ENST00000534356 SLC27A3Q5K4L6 730 aa12.04□□□□□ -0.48
CASP4-213ENST00000534356 CLP1Q92989 425 aaKnown RBP12.04□□□□□ -0.48
CASP4-213ENST00000534356 ZSCAN10Q96SZ4 725 aaPredicted RBP12.04□□□□□ -0.48
CASP4-213ENST00000534356 TSPAN10Q9H1Z9 355 aaPredicted RBP12.04□□□□□ -0.48
CASP4-213ENST00000534356 TBCELQ5QJ74 424 aa12.03□□□□□ -0.48
CASP4-213ENST00000534356 GAS2L2Q8NHY3 880 aa12.03□□□□□ -0.48
CASP4-213ENST00000534356 RNF217Q8TC41 542 aa12.03□□□□□ -0.48
CASP4-213ENST00000534356 PRIMPOLQ96LW4 560 aa12.03□□□□□ -0.48
CASP4-213ENST00000534356 IQSEC3Q9UPP2 1182 aaPredicted RBP12.03□□□□□ -0.48
CASP4-213ENST00000534356 FIGNL2A6NMB9 653 aa12.02□□□□□ -0.49
CASP4-213ENST00000534356 CDK2AP1O14519 115 aa12.02□□□□□ -0.49
CASP4-213ENST00000534356 PRMT3O60678 531 aa12.02□□□□□ -0.49
CASP4-213ENST00000534356 PDE4CQ08493 712 aa12.02□□□□□ -0.49
CASP4-213ENST00000534356 SLC9A9Q8IVB4 645 aa12.02□□□□□ -0.49
CASP4-213ENST00000534356 PPARGC1BQ86YN6 1023 aaKnown RBP12.01□□□□□ -0.49
CASP4-213ENST00000534356 C21orf2O43822 256 aa12□□□□□ -0.49
CASP4-213ENST00000534356 WEE1P30291 646 aa12□□□□□ -0.49
CASP4-213ENST00000534356 OCLNQ16625 522 aa12□□□□□ -0.49
CASP4-213ENST00000534356 TMEM214Q6NUQ4 689 aaKnown RBP12□□□□□ -0.49
CASP4-213ENST00000534356 SCG3Q8WXD2 468 aaKnown RBP12□□□□□ -0.49
CASP4-213ENST00000534356 TRAIPQ9BWF2 469 aa12□□□□□ -0.49
CASP4-213ENST00000534356 GMPR2Q9P2T1 348 aaKnown RBP12□□□□□ -0.49
CASP4-213ENST00000534356 PRICKLE2Q7Z3G6 844 aa11.99□□□□□ -0.49
CASP4-213ENST00000534356 ZNF295-AS1Q8N0V1 137 aa11.99□□□□□ -0.49
CASP4-213ENST00000534356 DNMT3LQ9UJW3 386 aa11.99□□□□□ -0.49
CASP4-213ENST00000534356 ATAD2Q6PL18 1390 aa11.99□□□□□ -0.49
CASP4-213ENST00000534356 PDIA4P13667 645 aaKnown RBP11.98□□□□□ -0.49
CASP4-213ENST00000534356 ATP2B4P23634 1241 aa11.98□□□□□ -0.49
CASP4-213ENST00000534356 LYSMD3Q7Z3D4 306 aa11.98□□□□□ -0.49
CASP4-213ENST00000534356 SOBPA7XYQ1 873 aa11.97□□□□□ -0.49
CASP4-213ENST00000534356 GTF2E1P29083 439 aaPredicted RBP11.97□□□□□ -0.49
CASP4-213ENST00000534356 POU4F2Q12837 409 aa11.97□□□□□ -0.49
CASP4-213ENST00000534356 RHBDD1Q8TEB9 315 aa11.97□□□□□ -0.49
CASP4-213ENST00000534356 SENP2Q9HC62 589 aa11.97□□□□□ -0.49
CASP4-213ENST00000534356 SPATA31C2B4DYI2 1134 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 IGFBP4P22692 258 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 SSFA2P28290 1259 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 GNASQ5JWF2 1037 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 NBPF15Q8N660 670 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 CABP1Q9NZU7 370 aa11.96□□□□□ -0.49
CASP4-213ENST00000534356 CXXC1Q9P0U4 656 aaPredicted RBP11.96□□□□□ -0.49
CASP4-213ENST00000534356 PPP1R12BO60237 982 aaPredicted RBP11.95□□□□□ -0.5
CASP4-213ENST00000534356 MAN1A2O60476 641 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 RHOQP17081 205 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 C4orf17Q53FE4 359 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 PHLDB3Q6NSJ2 640 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 ZDHHC1Q8WTX9 485 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 CHMP7Q8WUX9 453 aaPredicted RBP11.95□□□□□ -0.5
CASP4-213ENST00000534356 TRIM47Q96LD4 638 aa11.95□□□□□ -0.5
CASP4-213ENST00000534356 NIFKQ9BYG3 293 aaKnown RBP11.95□□□□□ -0.5
CASP4-213ENST00000534356 PHKA2P46019 1235 aa11.94□□□□□ -0.5
CASP4-213ENST00000534356 PSMA6P60900 246 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms