RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 REPIN1Q9BWE0 567 aaKnown RBP8.55□□□□□ -1.04
CMTM1-220ENST00000534143 STK26Q9P289 416 aa8.55□□□□□ -1.04
CMTM1-220ENST00000534143 EIF3AQ14152 1382 aaKnown RBP8.55□□□□□ -1.04
CMTM1-220ENST00000534143 PIK3R4Q99570 1358 aa8.55□□□□□ -1.04
CMTM1-220ENST00000534143 SBNO2Q9Y2G9 1366 aa8.55□□□□□ -1.04
CMTM1-220ENST00000534143 CENPJQ9HC77 1338 aaPredicted RBP8.54□□□□□ -1.04
CMTM1-220ENST00000534143 XRN1Q8IZH2 1706 aaKnown RBP8.54□□□□□ -1.04
CMTM1-220ENST00000534143 CPS1P31327 1500 aa8.54□□□□□ -1.04
CMTM1-220ENST00000534143 FAM135BQ49AJ0 1406 aa8.54□□□□□ -1.04
CMTM1-220ENST00000534143 WASHC2AQ641Q2 1341 aa8.54□□□□□ -1.04
CMTM1-220ENST00000534143 STRCP1A6NGW2 1772 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 QRICH2Q9H0J4 1663 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 CCDC7Q96M83 1385 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 KDM4AO75164 1064 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 AK7Q96M32 723 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 AMOTL2Q9Y2J4 779 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 SLC27A5Q9Y2P5 690 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 KIF7Q2M1P5 1343 aa8.53□□□□□ -1.04
CMTM1-220ENST00000534143 TRIM66O15016 1216 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 TMF1P82094 1093 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 ILDR2Q71H61 639 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 WAPLQ7Z5K2 1190 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 THAP11Q96EK4 314 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 PRAM1Q96QH2 718 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 SPSB2Q99619 263 aa8.52□□□□□ -1.05
CMTM1-220ENST00000534143 SALL2Q9Y467 1007 aaPredicted RBP8.52□□□□□ -1.05
CMTM1-220ENST00000534143 ROBO2Q9HCK4 1378 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 DISP3Q9P2K9 1392 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 PLEKHH1Q9ULM0 1364 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 RNF223E7ERA6 249 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 S1PR4O95977 384 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 SSTR3P32745 418 aaPredicted RBP8.51□□□□□ -1.05
CMTM1-220ENST00000534143 USP46P62068 366 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 PRKD2Q9BZL6 878 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 SLC6A16Q9GZN6 736 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 NWD1Q149M9 1564 aa8.51□□□□□ -1.05
CMTM1-220ENST00000534143 FMNL1O95466 1100 aaPredicted RBP8.5□□□□□ -1.05
CMTM1-220ENST00000534143 KCNA6P17658 529 aa8.5□□□□□ -1.05
CMTM1-220ENST00000534143 PTCH1Q13635 1447 aa8.5□□□□□ -1.05
CMTM1-220ENST00000534143 TTLL12Q14166 644 aaPredicted RBP8.5□□□□□ -1.05
CMTM1-220ENST00000534143 PUS7Q96PZ0 661 aaKnown RBP8.5□□□□□ -1.05
CMTM1-220ENST00000534143 POGKQ9P215 609 aa8.5□□□□□ -1.05
CMTM1-220ENST00000534143 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.5□□□□□ -1.05
CMTM1-220ENST00000534143 V9GY48 417 aaPredicted RBP8.5□□□□□ -1.05
CMTM1-220ENST00000534143 TULP4Q9NRJ4 1543 aa8.49□□□□□ -1.05
CMTM1-220ENST00000534143 UBAP1LF5GYI3 381 aa8.49□□□□□ -1.05
CMTM1-220ENST00000534143 DDX10Q13206 875 aaKnown RBP8.49□□□□□ -1.05
CMTM1-220ENST00000534143 SAFB2Q14151 953 aaKnown RBP eCLIP8.49□□□□□ -1.05
CMTM1-220ENST00000534143 BRICD5Q6PL45 260 aa8.49□□□□□ -1.05
CMTM1-220ENST00000534143 ANKLE1Q8NAG6 615 aa8.49□□□□□ -1.05
CMTM1-220ENST00000534143 XIRP1Q702N8 1843 aaKnown RBP8.48□□□□□ -1.05
CMTM1-220ENST00000534143 PPEF1O14829 653 aaPredicted RBP8.48□□□□□ -1.05
CMTM1-220ENST00000534143 CDCA8Q53HL2 280 aa8.48□□□□□ -1.05
CMTM1-220ENST00000534143 GIGYF2Q6Y7W6 1299 aaKnown RBP8.48□□□□□ -1.05
CMTM1-220ENST00000534143 IRX2Q9BZI1 471 aaPredicted RBP8.48□□□□□ -1.05
CMTM1-220ENST00000534143 SLC24A3Q9HC58 644 aa8.48□□□□□ -1.05
CMTM1-220ENST00000534143 EVC2Q86UK5 1308 aa8.48□□□□□ -1.05
CMTM1-220ENST00000534143 HOXA2O43364 376 aa8.47□□□□□ -1.05
CMTM1-220ENST00000534143 NUTM1Q86Y26 1132 aa8.47□□□□□ -1.05
CMTM1-220ENST00000534143 FAM160A2Q8N612 972 aaPredicted RBP8.47□□□□□ -1.05
CMTM1-220ENST00000534143 ADGRB2O60241 1585 aa8.47□□□□□ -1.05
CMTM1-220ENST00000534143 WASLO00401 505 aaPredicted RBP8.46□□□□□ -1.06
CMTM1-220ENST00000534143 Q3C1V9 767 aa8.46□□□□□ -1.06
CMTM1-220ENST00000534143 DIEXFQ68CQ4 756 aaKnown RBP8.46□□□□□ -1.06
CMTM1-220ENST00000534143 RNF19BQ6ZMZ0 732 aa8.46□□□□□ -1.06
CMTM1-220ENST00000534143 PARP9Q8IXQ6 854 aa8.46□□□□□ -1.06
CMTM1-220ENST00000534143 CDK19Q9BWU1 502 aa8.46□□□□□ -1.06
CMTM1-220ENST00000534143 MYOM1P52179 1685 aa8.46□□□□□ -1.06
CMTM1-220ENST00000534143 NKTRP30414 1462 aaKnown RBP8.45□□□□□ -1.06
CMTM1-220ENST00000534143 HLA-CQ95604 372 aa8.45□□□□□ -1.06
CMTM1-220ENST00000534143 POLR3GLQ9BT43 218 aa8.45□□□□□ -1.06
CMTM1-220ENST00000534143 NALCNQ8IZF0 1738 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 SLC19A1P41440 591 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 PIP4K2BP78356 416 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 PDE4DQ08499 809 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 MSS51Q4VC12 460 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 PROSER2Q86WR7 435 aaPredicted RBP8.44□□□□□ -1.06
CMTM1-220ENST00000534143 EMID1Q96A84 441 aaPredicted RBP8.44□□□□□ -1.06
CMTM1-220ENST00000534143 NCOA3Q9Y6Q9 1424 aa8.44□□□□□ -1.06
CMTM1-220ENST00000534143 MED1Q15648 1581 aaPredicted RBP8.44□□□□□ -1.06
CMTM1-220ENST00000534143 SOCS7O14512 581 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 PER1O15534 1290 aaPredicted RBP8.43□□□□□ -1.06
CMTM1-220ENST00000534143 SRPK2P78362 688 aaKnown RBP8.43□□□□□ -1.06
CMTM1-220ENST00000534143 SPIRE2Q8WWL2 714 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 PRR36Q9H6K5 1346 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 ATAD2Q6PL18 1390 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 ADGRL3Q9HAR2 1447 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 LRRC7Q96NW7 1537 aa8.43□□□□□ -1.06
CMTM1-220ENST00000534143 MS4A1P11836 297 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 GUCA2AQ02747 115 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 NUDT16Q96DE0 195 aaKnown RBP8.42□□□□□ -1.06
CMTM1-220ENST00000534143 BEGAINQ9BUH8 593 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 SLC12A5Q9H2X9 1139 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 PANK3Q9H999 370 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 USP32Q8NFA0 1604 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 FMN2Q9NZ56 1722 aa8.42□□□□□ -1.06
CMTM1-220ENST00000534143 RGPD8O14715 1765 aaPredicted RBP8.42□□□□□ -1.06
CMTM1-220ENST00000534143 CDC42BPGQ6DT37 1551 aa8.41□□□□□ -1.06
CMTM1-220ENST00000534143 ATP7BP35670 1465 aa8.41□□□□□ -1.06
CMTM1-220ENST00000534143 TMEM94Q12767 1356 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms