RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PRIM1P49642 420 aaKnown RBP9.47□□□□□ -0.89
CD44-237ENST00000534082 DDX54Q8TDD1 881 aaKnown RBP9.47□□□□□ -0.89
CD44-237ENST00000534082 CABP1Q9NZU7 370 aa9.47□□□□□ -0.89
CD44-237ENST00000534082 CIZ1Q9ULV3 898 aaPredicted RBP9.47□□□□□ -0.89
CD44-237ENST00000534082 C5P01031 1676 aa9.47□□□□□ -0.89
CD44-237ENST00000534082 USP54Q70EL1 1684 aa9.47□□□□□ -0.89
CD44-237ENST00000534082 TTC21BQ7Z4L5 1316 aa9.46□□□□□ -0.9
CD44-237ENST00000534082 POTEB2H3BUK9 544 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 FLAD1Q8NFF5 587 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 USP47Q96K76 1375 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 PLEKHG2Q9H7P9 1386 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 C10orf71Q711Q0 1435 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 PXDNLA1KZ92 1463 aa9.45□□□□□ -0.9
CD44-237ENST00000534082 ANKRD24Q8TF21 1146 aa9.44□□□□□ -0.9
CD44-237ENST00000534082 STAC3Q96MF2 364 aa9.44□□□□□ -0.9
CD44-237ENST00000534082 TMEM106CQ9BVX2 250 aa9.44□□□□□ -0.9
CD44-237ENST00000534082 PCDHB8Q9UN66 801 aa9.44□□□□□ -0.9
CD44-237ENST00000534082 TOGARAM1Q9Y4F4 1720 aa9.44□□□□□ -0.9
CD44-237ENST00000534082 KCPQ6ZWJ8 1503 aa9.43□□□□□ -0.9
CD44-237ENST00000534082 TTC21AQ8NDW8 1320 aa9.43□□□□□ -0.9
CD44-237ENST00000534082 CENPJQ9HC77 1338 aaPredicted RBP9.43□□□□□ -0.9
CD44-237ENST00000534082 TRIM35Q9UPQ4 493 aa9.43□□□□□ -0.9
CD44-237ENST00000534082 PKD1L3Q7Z443 1732 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 KIAA1551Q9HCM1 1747 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 SMC1BQ8NDV3 1235 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 BCS1LQ9Y276 419 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 LTN1O94822 1766 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 KIAA1210Q9ULL0 1709 aa9.42□□□□□ -0.9
CD44-237ENST00000534082 TNRC6CQ9HCJ0 1690 aaKnown RBP9.42□□□□□ -0.9
CD44-237ENST00000534082 KDM2BQ8NHM5 1336 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 PHF14O94880 888 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 FAM161AQ3B820 660 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 C9orf131Q5VYM1 1079 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 ARHGAP27Q6ZUM4 889 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 AMIGO3Q86WK7 504 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 AK7Q96M32 723 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 C4BP0C0L5 1744 aa9.41□□□□□ -0.9
CD44-237ENST00000534082 TAF1LQ8IZX4 1826 aa9.4□□□□□ -0.9
CD44-237ENST00000534082 FAM208AQ9UK61 1670 aaKnown RBP9.4□□□□□ -0.9
CD44-237ENST00000534082 SEC24BO95487 1268 aa9.4□□□□□ -0.9
CD44-237ENST00000534082 NSD3Q9BZ95 1437 aa9.39□□□□□ -0.91
CD44-237ENST00000534082 PALLDQ8WX93 1383 aa9.39□□□□□ -0.91
CD44-237ENST00000534082 UBR3Q6ZT12 1888 aa9.39□□□□□ -0.91
CD44-237ENST00000534082 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.39□□□□□ -0.91
CD44-237ENST00000534082 RRAGCQ9HB90 399 aa9.39□□□□□ -0.91
CD44-237ENST00000534082 KIF13BQ9NQT8 1826 aa9.39□□□□□ -0.91
CD44-237ENST00000534082 N4BP2Q86UW6 1770 aaPredicted RBP9.39□□□□□ -0.91
CD44-237ENST00000534082 USP31Q70CQ4 1352 aa9.38□□□□□ -0.91
CD44-237ENST00000534082 KTN1Q86UP2 1357 aaKnown RBP9.38□□□□□ -0.91
CD44-237ENST00000534082 MEGF6O75095 1541 aa9.38□□□□□ -0.91
CD44-237ENST00000534082 HMGB2P26583 209 aaKnown RBP9.38□□□□□ -0.91
CD44-237ENST00000534082 SMIM5Q71RC9 77 aa9.38□□□□□ -0.91
CD44-237ENST00000534082 OTUD5Q96G74 571 aa9.38□□□□□ -0.91
CD44-237ENST00000534082 MON2Q7Z3U7 1717 aa9.38□□□□□ -0.91
CD44-237ENST00000534082 A0A0G2JLW4 131 aa9.37□□□□□ -0.91
CD44-237ENST00000534082 FCHSD2O94868 740 aa9.37□□□□□ -0.91
CD44-237ENST00000534082 TGFB2P61812 414 aa9.37□□□□□ -0.91
CD44-237ENST00000534082 NBPF1Q3BBV0 1214 aa9.37□□□□□ -0.91
CD44-237ENST00000534082 ZCRB1Q8TBF4 217 aaKnown RBP9.37□□□□□ -0.91
CD44-237ENST00000534082 EVC2Q86UK5 1308 aa9.36□□□□□ -0.91
CD44-237ENST00000534082 MMP10P09238 476 aa9.36□□□□□ -0.91
CD44-237ENST00000534082 SSFA2P28290 1259 aa9.36□□□□□ -0.91
CD44-237ENST00000534082 ZNF467Q7Z7K2 595 aaPredicted RBP9.36□□□□□ -0.91
CD44-237ENST00000534082 PRDM10Q9NQV6 1147 aa9.36□□□□□ -0.91
CD44-237ENST00000534082 RNF181Q9P0P0 153 aa9.36□□□□□ -0.91
CD44-237ENST00000534082 POTEFA5A3E0 1075 aa9.35□□□□□ -0.91
CD44-237ENST00000534082 FOXN1O15353 648 aa9.35□□□□□ -0.91
CD44-237ENST00000534082 BRCA1P38398 1863 aaKnown RBP9.35□□□□□ -0.91
CD44-237ENST00000534082 NME9Q86XW9 330 aa9.35□□□□□ -0.91
CD44-237ENST00000534082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.35□□□□□ -0.91
CD44-237ENST00000534082 LTV1Q96GA3 475 aaPredicted RBP9.35□□□□□ -0.91
CD44-237ENST00000534082 COLQQ9Y215 455 aaPredicted RBP9.35□□□□□ -0.91
CD44-237ENST00000534082 ARFGEF1Q9Y6D6 1849 aa9.34□□□□□ -0.91
CD44-237ENST00000534082 DPEP1P16444 411 aa9.34□□□□□ -0.91
CD44-237ENST00000534082 POTEJP0CG39 1038 aa9.33□□□□□ -0.92
CD44-237ENST00000534082 CHRM1P11229 460 aaPredicted RBP9.33□□□□□ -0.92
CD44-237ENST00000534082 IER5LQ5T953 404 aa9.33□□□□□ -0.92
CD44-237ENST00000534082 IP6K1Q92551 441 aa9.33□□□□□ -0.92
CD44-237ENST00000534082 MKRN1Q9UHC7 482 aaKnown RBP9.33□□□□□ -0.92
CD44-237ENST00000534082 C4AP0C0L4 1744 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 GNPATO15228 680 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 MLLT1Q03111 559 aaPredicted RBP9.32□□□□□ -0.92
CD44-237ENST00000534082 MPRIPQ6WCQ1 1025 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 ABHD8Q96I13 439 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 DCAF5Q96JK2 942 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 CCDC87Q9NVE4 849 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 SBNO2Q9Y2G9 1366 aa9.32□□□□□ -0.92
CD44-237ENST00000534082 ZC3H4Q9UPT8 1303 aaKnown RBP9.31□□□□□ -0.92
CD44-237ENST00000534082 VEGFAP15692 232 aaPredicted RBP9.31□□□□□ -0.92
CD44-237ENST00000534082 PLCG2P16885 1265 aa9.31□□□□□ -0.92
CD44-237ENST00000534082 CTCFP49711 727 aaPredicted RBP9.31□□□□□ -0.92
CD44-237ENST00000534082 LINC00116Q8NCU8 138 aa9.31□□□□□ -0.92
CD44-237ENST00000534082 SMARCC1Q92922 1105 aaPredicted RBP9.31□□□□□ -0.92
CD44-237ENST00000534082 AIDAQ96BJ3 306 aa9.31□□□□□ -0.92
CD44-237ENST00000534082 RGPD2P0DJD1 1756 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 RAB3GAP2Q9H2M9 1393 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 KCNA3P22001 575 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 PSEN1P49768 467 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 GOLGA2Q08379 1002 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 DALRD3Q5D0E6 543 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms