RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 NKX1-1Q15270 411 aaPredicted RBP23.9■■□□□ 1.42
SMPD1-208ENST00000533123 B4GALNT3Q6L9W6 998 aa23.9■■□□□ 1.42
SMPD1-208ENST00000533123 ZNF772Q68DY9 489 aaPredicted RBP23.89■■□□□ 1.41
SMPD1-208ENST00000533123 SCN11AQ9UI33 1791 aa23.88■■□□□ 1.41
SMPD1-208ENST00000533123 ADAMTS7Q9UKP4 1686 aa23.88■■□□□ 1.41
SMPD1-208ENST00000533123 TSPYL4Q9UJ04 414 aa23.88■■□□□ 1.41
SMPD1-208ENST00000533123 EXOSC9Q06265 439 aaKnown RBP23.87■■□□□ 1.41
SMPD1-208ENST00000533123 NFATC2IPQ8NCF5 419 aa23.87■■□□□ 1.41
SMPD1-208ENST00000533123 SLC52A2Q9HAB3 445 aa23.86■■□□□ 1.41
SMPD1-208ENST00000533123 MARCH10Q8NA82 808 aaPredicted RBP23.86■■□□□ 1.41
SMPD1-208ENST00000533123 EXOC6Q8TAG9 804 aa23.85■■□□□ 1.41
SMPD1-208ENST00000533123 BTBD11A6QL63 1104 aa23.84■■□□□ 1.41
SMPD1-208ENST00000533123 ONECUT3O60422 494 aaPredicted RBP23.84■■□□□ 1.41
SMPD1-208ENST00000533123 CABP4P57796 275 aa23.84■■□□□ 1.41
SMPD1-208ENST00000533123 C20orf194Q5TEA3 1177 aa23.84■■□□□ 1.41
SMPD1-208ENST00000533123 KAT6BQ8WYB5 2073 aa23.84■■□□□ 1.41
SMPD1-208ENST00000533123 BCAR3O75815 825 aa23.83■■□□□ 1.41
SMPD1-208ENST00000533123 THSD7AQ9UPZ6 1657 aa23.82■■□□□ 1.4
SMPD1-208ENST00000533123 ELL2O00472 640 aaPredicted RBP23.82■■□□□ 1.4
SMPD1-208ENST00000533123 ILDR1Q86SU0 546 aaPredicted RBP23.82■■□□□ 1.4
SMPD1-208ENST00000533123 ERVV-2B6SEH9 535 aa23.82■■□□□ 1.4
SMPD1-208ENST00000533123 KRT24Q2M2I5 525 aa23.82■■□□□ 1.4
SMPD1-208ENST00000533123 SEPT12Q8IYM1 358 aa23.82■■□□□ 1.4
SMPD1-208ENST00000533123 BABAM1Q9NWV8 329 aa23.82■■□□□ 1.4
SMPD1-208ENST00000533123 RGS17Q9UGC6 210 aaPredicted RBP23.82■■□□□ 1.4
SMPD1-208ENST00000533123 C8orf58Q8NAV2 365 aa23.81■■□□□ 1.4
SMPD1-208ENST00000533123 KCNQ3O43525 872 aa23.8■■□□□ 1.4
SMPD1-208ENST00000533123 TSPYL6Q8N831 410 aa23.8■■□□□ 1.4
SMPD1-208ENST00000533123 SIPA1L3O60292 1781 aaPredicted RBP23.8■■□□□ 1.4
SMPD1-208ENST00000533123 RBM6P78332 1123 aaKnown RBP23.79■■□□□ 1.4
SMPD1-208ENST00000533123 MRC1P22897 1456 aa23.79■■□□□ 1.4
SMPD1-208ENST00000533123 TOGARAM1Q9Y4F4 1720 aa23.79■■□□□ 1.4
SMPD1-208ENST00000533123 SLC39A6Q13433 755 aa23.79■■□□□ 1.4
SMPD1-208ENST00000533123 CRBNQ96SW2 442 aa23.78■■□□□ 1.4
SMPD1-208ENST00000533123 TWISTNBQ3B726 338 aaPredicted RBP23.76■■□□□ 1.39
SMPD1-208ENST00000533123 FAM182BQ5T319 152 aa23.76■■□□□ 1.39
SMPD1-208ENST00000533123 SYTL4Q96C24 671 aaPredicted RBP23.76■■□□□ 1.39
SMPD1-208ENST00000533123 CCDC136Q96JN2 1154 aa23.76■■□□□ 1.39
SMPD1-208ENST00000533123 TMOD3Q9NYL9 352 aa23.76■■□□□ 1.39
SMPD1-208ENST00000533123 KDM3BQ7LBC6 1761 aa23.75■■□□□ 1.39
SMPD1-208ENST00000533123 VAMP4O75379 141 aa23.75■■□□□ 1.39
SMPD1-208ENST00000533123 ZNF790Q6PG37 636 aa23.75■■□□□ 1.39
SMPD1-208ENST00000533123 ACSBG1Q96GR2 724 aa23.75■■□□□ 1.39
SMPD1-208ENST00000533123 PRIM1P49642 420 aaKnown RBP23.75■■□□□ 1.39
SMPD1-208ENST00000533123 RARSP54136 660 aaKnown RBP23.75■■□□□ 1.39
SMPD1-208ENST00000533123 EIF4A1P60842 406 aaKnown RBP23.75■■□□□ 1.39
SMPD1-208ENST00000533123 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.75■■□□□ 1.39
SMPD1-208ENST00000533123 CT47B1P0C2W7 299 aaPredicted RBP23.74■■□□□ 1.39
SMPD1-208ENST00000533123 RXRBP28702 533 aa23.74■■□□□ 1.39
SMPD1-208ENST00000533123 POTEAQ6S8J7 498 aa23.74■■□□□ 1.39
SMPD1-208ENST00000533123 PIGBQ92521 554 aa23.74■■□□□ 1.39
SMPD1-208ENST00000533123 EP400Q96L91 3159 aa23.73■■□□□ 1.39
SMPD1-208ENST00000533123 BCL2L13Q9BXK5 485 aa23.73■■□□□ 1.39
SMPD1-208ENST00000533123 ITGB4P16144 1822 aa23.72■■□□□ 1.39
SMPD1-208ENST00000533123 DOT1LQ8TEK3 1739 aa23.72■■□□□ 1.39
SMPD1-208ENST00000533123 TTC5Q8N0Z6 440 aa23.71■■□□□ 1.39
SMPD1-208ENST00000533123 BCL9O00512 1426 aa23.7■■□□□ 1.38
SMPD1-208ENST00000533123 TCERG1O14776 1098 aaKnown RBP23.69■■□□□ 1.38
SMPD1-208ENST00000533123 KCNQ2O43526 872 aa23.69■■□□□ 1.38
SMPD1-208ENST00000533123 SSH1Q8WYL5 1049 aa23.69■■□□□ 1.38
SMPD1-208ENST00000533123 ZNF496Q96IT1 587 aaPredicted RBP23.69■■□□□ 1.38
SMPD1-208ENST00000533123 ASAP1Q9ULH1 1129 aa23.69■■□□□ 1.38
SMPD1-208ENST00000533123 KRT27Q7Z3Y8 459 aa23.68■■□□□ 1.38
SMPD1-208ENST00000533123 FRAT1Q92837 279 aaPredicted RBP23.68■■□□□ 1.38
SMPD1-208ENST00000533123 BRWD3Q6RI45 1802 aa23.68■■□□□ 1.38
SMPD1-208ENST00000533123 CANXP27824 592 aaKnown RBP23.67■■□□□ 1.38
SMPD1-208ENST00000533123 ATG3Q9NT62 314 aa23.67■■□□□ 1.38
SMPD1-208ENST00000533123 PRAMEF22A3QJZ6 481 aa23.66■■□□□ 1.38
SMPD1-208ENST00000533123 GIGYF1O75420 1035 aaPredicted RBP23.66■■□□□ 1.38
SMPD1-208ENST00000533123 ZNF428Q96B54 188 aa23.66■■□□□ 1.38
SMPD1-208ENST00000533123 SMC4Q9NTJ3 1288 aa23.66■■□□□ 1.38
SMPD1-208ENST00000533123 HEG1Q9ULI3 1381 aa23.66■■□□□ 1.38
SMPD1-208ENST00000533123 PTCD1O75127 700 aaKnown RBP23.65■■□□□ 1.38
SMPD1-208ENST00000533123 NECTIN2Q92692 538 aa23.65■■□□□ 1.38
SMPD1-208ENST00000533123 ANP32EQ9BTT0 268 aa23.65■■□□□ 1.38
SMPD1-208ENST00000533123 FMNL2Q96PY5 1086 aa23.65■■□□□ 1.38
SMPD1-208ENST00000533123 EIF2S2P20042 333 aaKnown RBP23.64■■□□□ 1.37
SMPD1-208ENST00000533123 ALDH1L2Q3SY69 923 aa23.64■■□□□ 1.37
SMPD1-208ENST00000533123 PTF1AQ7RTS3 328 aa23.64■■□□□ 1.37
SMPD1-208ENST00000533123 PAPPAQ13219 1627 aa23.63■■□□□ 1.37
SMPD1-208ENST00000533123 TNNQ9UQP3 1299 aa23.63■■□□□ 1.37
SMPD1-208ENST00000533123 RGS12O14924 1447 aa23.62■■□□□ 1.37
SMPD1-208ENST00000533123 PANK1Q8TE04 598 aa23.62■■□□□ 1.37
SMPD1-208ENST00000533123 SOS1Q07889 1333 aaPredicted RBP23.62■■□□□ 1.37
SMPD1-208ENST00000533123 HOXB7P09629 217 aa23.61■■□□□ 1.37
SMPD1-208ENST00000533123 HDGFL1Q5TGJ6 251 aa23.61■■□□□ 1.37
SMPD1-208ENST00000533123 KCPQ6ZWJ8 1503 aa23.61■■□□□ 1.37
SMPD1-208ENST00000533123 UBR2Q8IWV8 1755 aa23.61■■□□□ 1.37
SMPD1-208ENST00000533123 SNRPA1P09661 255 aaKnown RBP23.6■■□□□ 1.37
SMPD1-208ENST00000533123 PDE3AQ14432 1141 aa23.6■■□□□ 1.37
SMPD1-208ENST00000533123 MRPL50Q8N5N7 158 aaKnown RBP23.6■■□□□ 1.37
SMPD1-208ENST00000533123 RBM42Q9BTD8 480 aaKnown RBP23.6■■□□□ 1.37
SMPD1-208ENST00000533123 CCDC30Q5VVM6 783 aa23.59■■□□□ 1.37
SMPD1-208ENST00000533123 FAM196AQ6ZSG2 479 aa23.59■■□□□ 1.37
SMPD1-208ENST00000533123 USP16Q9Y5T5 823 aa23.59■■□□□ 1.37
SMPD1-208ENST00000533123 SLC4A2P04920 1241 aa23.58■■□□□ 1.37
SMPD1-208ENST00000533123 RLBP1P12271 317 aa23.57■■□□□ 1.36
SMPD1-208ENST00000533123 NOB1Q9ULX3 412 aaKnown RBP23.57■■□□□ 1.36
SMPD1-208ENST00000533123 C5P01031 1676 aa23.57■■□□□ 1.36
SMPD1-208ENST00000533123 STK31Q9BXU1 1019 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms