RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 KDRP35968 1356 aa12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 PHF14O94880 888 aa12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 ITPK1Q13572 414 aa12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 FLAD1Q8NFF5 587 aa12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 IGSF1Q8N6C5 1336 aa12.86□□□□□ -0.35
CHMP4A-205ENST00000531158 ARFGEF1Q9Y6D6 1849 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 TJP1Q07157 1748 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 AK7Q96M32 723 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 EYA1Q99502 592 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 ADAMTS7Q9UKP4 1686 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 PXDNLA1KZ92 1463 aa12.85□□□□□ -0.35
CHMP4A-205ENST00000531158 LOC102724428A0A0B4J2F2 783 aa12.84□□□□□ -0.35
CHMP4A-205ENST00000531158 SIK1P57059 783 aa12.84□□□□□ -0.35
CHMP4A-205ENST00000531158 ASAP1Q9ULH1 1129 aa12.84□□□□□ -0.35
CHMP4A-205ENST00000531158 WASHC2AQ641Q2 1341 aa12.84□□□□□ -0.35
CHMP4A-205ENST00000531158 PCNTO95613 3336 aa12.83□□□□□ -0.35
CHMP4A-205ENST00000531158 ZEB1P37275 1124 aaPredicted RBP12.83□□□□□ -0.36
CHMP4A-205ENST00000531158 SMARCC1Q92922 1105 aaPredicted RBP12.83□□□□□ -0.36
CHMP4A-205ENST00000531158 SCN11AQ9UI33 1791 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 PPM1GO15355 546 aaPredicted RBP12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 HSPA1AP0DMV8 641 aaKnown RBP12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 HSPA1BP0DMV9 641 aaKnown RBP12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 PHKG2P15735 406 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 SSFA2P28290 1259 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 C16orf71Q8IYS4 520 aaPredicted RBP12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 RBM46Q8TBY0 533 aaKnown RBP12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 SLC4A9Q96Q91 983 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 NMRK2Q9NPI5 230 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 ATG3Q9NT62 314 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 POLKQ9UBT6 870 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 SBF1O95248 1867 aa12.82□□□□□ -0.36
CHMP4A-205ENST00000531158 KDM6AO15550 1401 aaPredicted RBP12.8□□□□□ -0.36
CHMP4A-205ENST00000531158 C10orf71Q711Q0 1435 aa12.8□□□□□ -0.36
CHMP4A-205ENST00000531158 GNPATO15228 680 aa12.8□□□□□ -0.36
CHMP4A-205ENST00000531158 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.8□□□□□ -0.365e-16■■■■■ 34.4
CHMP4A-205ENST00000531158 SPG7Q9UQ90 795 aa12.8□□□□□ -0.36
CHMP4A-205ENST00000531158 ATP6V1AP38606 617 aa12.79□□□□□ -0.36
CHMP4A-205ENST00000531158 FSTL1Q12841 308 aa12.79□□□□□ -0.36
CHMP4A-205ENST00000531158 EIF4A2Q14240 407 aaKnown RBP12.79□□□□□ -0.36
CHMP4A-205ENST00000531158 TMOD3Q9NYL9 352 aa12.79□□□□□ -0.36
CHMP4A-205ENST00000531158 AFDNP55196 1824 aaKnown RBP12.78□□□□□ -0.36
CHMP4A-205ENST00000531158 MMP10P09238 476 aa12.78□□□□□ -0.36
CHMP4A-205ENST00000531158 CDCA8Q53HL2 280 aa12.78□□□□□ -0.36
CHMP4A-205ENST00000531158 IFNL2Q8IZJ0 200 aa12.78□□□□□ -0.36
CHMP4A-205ENST00000531158 DLEC1Q9Y238 1755 aa12.77□□□□□ -0.36
CHMP4A-205ENST00000531158 PLEKHG2Q9H7P9 1386 aa12.77□□□□□ -0.37
CHMP4A-205ENST00000531158 HMGB2P26583 209 aaKnown RBP12.75□□□□□ -0.37
CHMP4A-205ENST00000531158 TNNT2P45379 298 aaPredicted RBP12.75□□□□□ -0.37
CHMP4A-205ENST00000531158 FAM161AQ3B820 660 aa12.75□□□□□ -0.37
CHMP4A-205ENST00000531158 CCDC88AQ3V6T2 1871 aa12.75□□□□□ -0.37
CHMP4A-205ENST00000531158 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
CHMP4A-205ENST00000531158 A0A0G2JLW4 131 aa12.74□□□□□ -0.37
CHMP4A-205ENST00000531158 GYS1P13807 737 aa12.74□□□□□ -0.37
CHMP4A-205ENST00000531158 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
CHMP4A-205ENST00000531158 UBR2Q8IWV8 1755 aa12.74□□□□□ -0.37
CHMP4A-205ENST00000531158 CNTNAP4Q9C0A0 1308 aa12.73□□□□□ -0.37
CHMP4A-205ENST00000531158 KCNA3P22001 575 aa12.73□□□□□ -0.37
CHMP4A-205ENST00000531158 AEBP1Q8IUX7 1158 aa12.73□□□□□ -0.37
CHMP4A-205ENST00000531158 TNRC6CQ9HCJ0 1690 aaKnown RBP12.73□□□□□ -0.37
CHMP4A-205ENST00000531158 ERVV-2B6SEH9 535 aa12.72□□□□□ -0.37
CHMP4A-205ENST00000531158 DPEP1P16444 411 aa12.72□□□□□ -0.37
CHMP4A-205ENST00000531158 RTCBQ9Y3I0 505 aaKnown RBP12.72□□□□□ -0.37
CHMP4A-205ENST00000531158 TGFB2P61812 414 aa12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 TRAPPC3LQ5T215 181 aa12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 RC3H1Q5TC82 1133 aaKnown RBP12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 DCAF5Q96JK2 942 aa12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 RBM42Q9BTD8 480 aaKnown RBP12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 BCS1LQ9Y276 419 aa12.71□□□□□ -0.37
CHMP4A-205ENST00000531158 TIAM2Q8IVF5 1701 aa12.71□□□□□ -0.38
CHMP4A-205ENST00000531158 ANKRD31Q8N7Z5 1873 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 RPS6KA4O75676 772 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 DDR1Q08345 913 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 ARHGAP27Q6ZUM4 889 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 NLGN1Q8N2Q7 840 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 MRC1P22897 1456 aa12.7□□□□□ -0.38
CHMP4A-205ENST00000531158 KCPQ6ZWJ8 1503 aa12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 ADRA2BP18089 450 aa12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 ZNF530Q6P9A1 599 aaPredicted RBP12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 SMC1BQ8NDV3 1235 aa12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 RRAGCQ9HB90 399 aa12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 SRP68Q9UHB9 627 aaKnown RBP12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 SIPA1L3O60292 1781 aaPredicted RBP12.69□□□□□ -0.38
CHMP4A-205ENST00000531158 USP42Q9H9J4 1324 aaKnown RBP12.68□□□□□ -0.38
CHMP4A-205ENST00000531158 FKBP8Q14318 412 aa12.68□□□□□ -0.38
CHMP4A-205ENST00000531158 COL11A2P13942 1736 aaPredicted RBP12.68□□□□□ -0.38
CHMP4A-205ENST00000531158 KDM2BQ8NHM5 1336 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 PTCD1O75127 700 aaKnown RBP12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 RFC4P35249 363 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 CRKLP46109 303 aaKnown RBP12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 PLEKHO1Q53GL0 409 aaPredicted RBP12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 NFATC2IPQ8NCF5 419 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 POLR3GLQ9BT43 218 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 PANK3Q9H999 370 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 CCDC87Q9NVE4 849 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 CACNA1SQ13698 1873 aa12.67□□□□□ -0.38
CHMP4A-205ENST00000531158 FCHSD2O94868 740 aa12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 HSP90AB1P08238 724 aaKnown RBP12.66□□□□□ -0.38
CHMP4A-205ENST00000531158 CABP4P57796 275 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms