RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 CNKSR1Q969H4 720 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 PURBQ96QR8 312 aaKnown RBP9.09□□□□□ -0.95
CD44-230ENST00000528922 ESYT1Q9BSJ8 1104 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 ZNF358Q9NW07 568 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 HRH3Q9Y5N1 445 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 MEN1O00255 615 aa9.08□□□□□ -0.96
CD44-230ENST00000528922 CTSOP43234 321 aaPredicted RBP9.08□□□□□ -0.96
CD44-230ENST00000528922 ESCO1Q5FWF5 840 aa9.08□□□□□ -0.96
CD44-230ENST00000528922 ZFP42Q96MM3 310 aa9.08□□□□□ -0.96
CD44-230ENST00000528922 SERTAD1Q9UHV2 236 aa9.08□□□□□ -0.96
CD44-230ENST00000528922 SEC13P55735 322 aa9.07□□□□□ -0.96
CD44-230ENST00000528922 SCARF1Q14162 830 aa9.07□□□□□ -0.96
CD44-230ENST00000528922 FAM200AQ8TCP9 573 aa9.07□□□□□ -0.96
CD44-230ENST00000528922 SLC4A9Q96Q91 983 aa9.07□□□□□ -0.96
CD44-230ENST00000528922 CENPCQ03188 943 aa9.06□□□□□ -0.96
CD44-230ENST00000528922 FAM69CQ0P6D2 419 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 TMEM164Q5U3C3 297 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 FOXD4L5Q5VV16 416 aaPredicted RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 TSEN2Q8NCE0 465 aaKnown RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 NLRP3Q96P20 1036 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 FHDC1Q9C0D6 1143 aaPredicted RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 CARNS1A5YM72 827 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 LGR5O75473 907 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 RNF144AP50876 292 aaPredicted RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 SMTNP53814 917 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 TNS4Q8IZW8 715 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 RETREG2Q8NC44 543 aa9.05□□□□□ -0.96
CD44-230ENST00000528922 POLMQ9NP87 494 aaPredicted RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 RBM19Q9Y4C8 960 aaKnown RBP9.05□□□□□ -0.96
CD44-230ENST00000528922 SOS2Q07890 1332 aaPredicted RBP9.04□□□□□ -0.96
CD44-230ENST00000528922 TMEM88BA6NKF7 163 aa9.04□□□□□ -0.96
CD44-230ENST00000528922 M0R2N6 131 aa9.04□□□□□ -0.96
CD44-230ENST00000528922 BACH1O14867 736 aa9.04□□□□□ -0.96
CD44-230ENST00000528922 EPHA4P54764 986 aa9.04□□□□□ -0.96
CD44-230ENST00000528922 GRIP2Q9C0E4 1043 aa9.04□□□□□ -0.96
CD44-230ENST00000528922 GMPR2Q9P2T1 348 aaKnown RBP9.04□□□□□ -0.96
CD44-230ENST00000528922 A6NJY4 79 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 TTLL8A6PVC2 850 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 CSB-PGBD3P0DP91 1061 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 GPC1P35052 558 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 MTFR1Q15390 333 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 TLR1Q15399 786 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 USP3Q9Y6I4 520 aa9.03□□□□□ -0.96
CD44-230ENST00000528922 FIGNL2A6NMB9 653 aa9.02□□□□□ -0.97
CD44-230ENST00000528922 RNF217Q8TC41 542 aa9.02□□□□□ -0.97
CD44-230ENST00000528922 SLAIN2Q9P270 581 aa9.02□□□□□ -0.97
CD44-230ENST00000528922 POTECB2RU33 542 aa9.01□□□□□ -0.97
CD44-230ENST00000528922 ZSCAN10Q96SZ4 725 aaPredicted RBP9.01□□□□□ -0.97
CD44-230ENST00000528922 HINFPQ9BQA5 517 aa9.01□□□□□ -0.97
CD44-230ENST00000528922 SCHIP1Q9P0W5 487 aaPredicted RBP9.01□□□□□ -0.97
CD44-230ENST00000528922 IQSEC3Q9UPP2 1182 aaPredicted RBP9.01□□□□□ -0.97
CD44-230ENST00000528922 CDK2AP1O14519 115 aa9□□□□□ -0.97
CD44-230ENST00000528922 FOXK2Q01167 660 aa9□□□□□ -0.97
CD44-230ENST00000528922 SLC27A3Q5K4L6 730 aa9□□□□□ -0.97
CD44-230ENST00000528922 DNMT3LQ9UJW3 386 aa9□□□□□ -0.97
CD44-230ENST00000528922 SOBPA7XYQ1 873 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 SWI5Q1ZZU3 235 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 TBCELQ5QJ74 424 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 PRICKLE2Q7Z3G6 844 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 PPARGC1BQ86YN6 1023 aaKnown RBP8.99□□□□□ -0.97
CD44-230ENST00000528922 ZNF295-AS1Q8N0V1 137 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 GAS2L2Q8NHY3 880 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 TRIM47Q96LD4 638 aa8.99□□□□□ -0.97
CD44-230ENST00000528922 TSPAN10Q9H1Z9 355 aaPredicted RBP8.99□□□□□ -0.97
CD44-230ENST00000528922 C21orf2O43822 256 aa8.98□□□□□ -0.97
CD44-230ENST00000528922 SNRPBP14678 240 aaKnown RBP8.98□□□□□ -0.97
CD44-230ENST00000528922 SENP2Q9HC62 589 aa8.98□□□□□ -0.97
CD44-230ENST00000528922 USTQ9Y2C2 406 aa8.98□□□□□ -0.97
CD44-230ENST00000528922 POU4F2Q12837 409 aa8.97□□□□□ -0.97
CD44-230ENST00000528922 TMEM214Q6NUQ4 689 aaKnown RBP8.97□□□□□ -0.97
CD44-230ENST00000528922 LYSMD3Q7Z3D4 306 aa8.97□□□□□ -0.97
CD44-230ENST00000528922 SLC9A9Q8IVB4 645 aa8.97□□□□□ -0.97
CD44-230ENST00000528922 CLP1Q92989 425 aaKnown RBP8.97□□□□□ -0.97
CD44-230ENST00000528922 PRIMPOLQ96LW4 560 aa8.97□□□□□ -0.97
CD44-230ENST00000528922 SPATA31C2B4DYI2 1134 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 MAN1A2O60476 641 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 PRMT3O60678 531 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 RHOQP17081 205 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 WEE1P30291 646 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 KIFC2Q96AC6 838 aa8.96□□□□□ -0.98
CD44-230ENST00000528922 ATAD2Q6PL18 1390 aa8.95□□□□□ -0.98
CD44-230ENST00000528922 OCLNQ16625 522 aa8.95□□□□□ -0.98
CD44-230ENST00000528922 C4orf17Q53FE4 359 aa8.95□□□□□ -0.98
CD44-230ENST00000528922 ZDHHC1Q8WTX9 485 aa8.95□□□□□ -0.98
CD44-230ENST00000528922 SCG3Q8WXD2 468 aaKnown RBP8.95□□□□□ -0.98
CD44-230ENST00000528922 C11orf95C9JLR9 678 aaPredicted RBP8.94□□□□□ -0.98
CD44-230ENST00000528922 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.94□□□□□ -0.98
CD44-230ENST00000528922 NBPF10Q6P3W6 841 aaKnown RBP8.94□□□□□ -0.98
CD44-230ENST00000528922 NBPF15Q8N660 670 aa8.94□□□□□ -0.98
CD44-230ENST00000528922 RHBDD1Q8TEB9 315 aa8.94□□□□□ -0.98
CD44-230ENST00000528922 IGFBP4P22692 258 aa8.93□□□□□ -0.98
CD44-230ENST00000528922 PHKA2P46019 1235 aa8.93□□□□□ -0.98
CD44-230ENST00000528922 GNASQ5JWF2 1037 aa8.93□□□□□ -0.98
CD44-230ENST00000528922 TAS1R3Q7RTX0 852 aa8.93□□□□□ -0.98
CD44-230ENST00000528922 NIFKQ9BYG3 293 aaKnown RBP8.93□□□□□ -0.98
CD44-230ENST00000528922 PARP3Q9Y6F1 533 aa8.93□□□□□ -0.98
CD44-230ENST00000528922 PPP1R12BO60237 982 aaPredicted RBP8.92□□□□□ -0.98
CD44-230ENST00000528922 ATP2B4P23634 1241 aa8.92□□□□□ -0.98
CD44-230ENST00000528922 GTF2E1P29083 439 aaPredicted RBP8.92□□□□□ -0.98
CD44-230ENST00000528922 TEAD4Q15561 434 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms