RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 ERVV-2B6SEH9 535 aa18.46■□□□□ 0.55
SSSCA1-204ENST00000527413 AK7Q96M32 723 aa18.46■□□□□ 0.55
SSSCA1-204ENST00000527413 C1orf141Q5JVX7 400 aa18.45■□□□□ 0.54
SSSCA1-204ENST00000527413 LINC00116Q8NCU8 138 aa18.45■□□□□ 0.54
SSSCA1-204ENST00000527413 FLAD1Q8NFF5 587 aa18.45■□□□□ 0.54
SSSCA1-204ENST00000527413 ATG3Q9NT62 314 aa18.45■□□□□ 0.54
SSSCA1-204ENST00000527413 CICQ96RK0 1608 aaPredicted RBP18.45■□□□□ 0.54
SSSCA1-204ENST00000527413 ADAMTS7Q9UKP4 1686 aa18.44■□□□□ 0.54
SSSCA1-204ENST00000527413 ATP6V1AP38606 617 aa18.43■□□□□ 0.54
SSSCA1-204ENST00000527413 ITPK1Q13572 414 aa18.43■□□□□ 0.54
SSSCA1-204ENST00000527413 AMIGO3Q86WK7 504 aa18.43■□□□□ 0.54
SSSCA1-204ENST00000527413 KLHL34Q8N239 644 aa18.43■□□□□ 0.54
SSSCA1-204ENST00000527413 TJP1Q07157 1748 aa18.43■□□□□ 0.54
SSSCA1-204ENST00000527413 DIAPH1O60610 1272 aaKnown RBP18.42■□□□□ 0.54
SSSCA1-204ENST00000527413 MSL1Q68DK7 614 aa18.42■□□□□ 0.54
SSSCA1-204ENST00000527413 MRC1P22897 1456 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 C4AP0C0L4 1744 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 MYH14Q7Z406 1995 aaKnown RBP18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 PHF14O94880 888 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 HMOX1P09601 288 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 YY1P25490 414 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 CABP4P57796 275 aa18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 CNGB1Q14028 1251 aaPredicted RBP18.41■□□□□ 0.54
SSSCA1-204ENST00000527413 SSFA2P28290 1259 aa18.4■□□□□ 0.54
SSSCA1-204ENST00000527413 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.39■□□□□ 0.53
SSSCA1-204ENST00000527413 SMIM5Q71RC9 77 aa18.39■□□□□ 0.53
SSSCA1-204ENST00000527413 SLC4A9Q96Q91 983 aa18.39■□□□□ 0.53
SSSCA1-204ENST00000527413 RBM42Q9BTD8 480 aaKnown RBP18.39■□□□□ 0.53
SSSCA1-204ENST00000527413 GNPATO15228 680 aa18.38■□□□□ 0.53
SSSCA1-204ENST00000527413 AKAP4Q5JQC9 854 aa18.38■□□□□ 0.53
SSSCA1-204ENST00000527413 UBR2Q8IWV8 1755 aa18.37■□□□□ 0.53
SSSCA1-204ENST00000527413 NFATC2IPQ8NCF5 419 aa18.36■□□□□ 0.53
SSSCA1-204ENST00000527413 NLGN2Q8NFZ4 835 aa18.36■□□□□ 0.53
SSSCA1-204ENST00000527413 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
SSSCA1-204ENST00000527413 CNTNAP4Q9C0A0 1308 aa18.35■□□□□ 0.53
SSSCA1-204ENST00000527413 U2SURPO15042 1029 aaKnown RBP18.34■□□□□ 0.53
SSSCA1-204ENST00000527413 MTHFSDQ2M296 383 aaKnown RBP18.34■□□□□ 0.53
SSSCA1-204ENST00000527413 KIF13BQ9NQT8 1826 aa18.33■□□□□ 0.53
SSSCA1-204ENST00000527413 PTCD1O75127 700 aaKnown RBP18.33■□□□□ 0.52
SSSCA1-204ENST00000527413 SLC52A2Q9HAB3 445 aa18.33■□□□□ 0.52
SSSCA1-204ENST00000527413 RTCBQ9Y3I0 505 aaKnown RBP18.33■□□□□ 0.52
SSSCA1-204ENST00000527413 RNMTO43148 476 aaKnown RBP18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 GPR162Q16538 588 aa18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 RC3H1Q5TC82 1133 aaKnown RBP18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 LGR6Q9HBX8 967 aa18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 UTRNP46939 3433 aa18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 KCPQ6ZWJ8 1503 aa18.32■□□□□ 0.52
SSSCA1-204ENST00000527413 CFAP53Q96M91 514 aa18.31■□□□□ 0.52
SSSCA1-204ENST00000527413 PELP1Q8IZL8 1130 aaKnown RBP18.3■□□□□ 0.52
SSSCA1-204ENST00000527413 CD2APQ9Y5K6 639 aa18.3■□□□□ 0.52
SSSCA1-204ENST00000527413 GOLGB1Q14789 3259 aaKnown RBP18.3■□□□□ 0.52
SSSCA1-204ENST00000527413 KIAA1551Q9HCM1 1747 aa18.29■□□□□ 0.52
SSSCA1-204ENST00000527413 RPS6KA4O75676 772 aa18.29■□□□□ 0.52
SSSCA1-204ENST00000527413 ADRA2BP18089 450 aa18.29■□□□□ 0.52
SSSCA1-204ENST00000527413 PPP2R1AP30153 589 aa18.29■□□□□ 0.52
SSSCA1-204ENST00000527413 TRAPPC3LQ5T215 181 aa18.29■□□□□ 0.52
SSSCA1-204ENST00000527413 CRKLP46109 303 aaKnown RBP18.28■□□□□ 0.52
SSSCA1-204ENST00000527413 GAS2L2Q8NHY3 880 aa18.27■□□□□ 0.52
SSSCA1-204ENST00000527413 ARHGEF1Q92888 912 aaKnown RBP18.27■□□□□ 0.52
SSSCA1-204ENST00000527413 YBX3P16989 372 aaKnown RBP eCLIP18.26■□□□□ 0.51
SSSCA1-204ENST00000527413 SLC39A6Q13433 755 aa18.26■□□□□ 0.51
SSSCA1-204ENST00000527413 RSPH6AQ9H0K4 717 aa18.26■□□□□ 0.51
SSSCA1-204ENST00000527413 N4BP2Q86UW6 1770 aaPredicted RBP18.26■□□□□ 0.51
SSSCA1-204ENST00000527413 MMP10P09238 476 aa18.25■□□□□ 0.51
SSSCA1-204ENST00000527413 RFC4P35249 363 aa18.25■□□□□ 0.51
SSSCA1-204ENST00000527413 NUDCQ9Y266 331 aa18.25■□□□□ 0.51
SSSCA1-204ENST00000527413 GNAT3A8MTJ3 354 aa18.24■□□□□ 0.51
SSSCA1-204ENST00000527413 GYS1P13807 737 aa18.24■□□□□ 0.51
SSSCA1-204ENST00000527413 PRKAR2BP31323 418 aa18.24■□□□□ 0.51
SSSCA1-204ENST00000527413 DNAJC10Q8IXB1 793 aa18.24■□□□□ 0.51
SSSCA1-204ENST00000527413 NLGN1Q8N2Q7 840 aa18.24■□□□□ 0.51
SSSCA1-204ENST00000527413 DLG5Q8TDM6 1919 aa18.23■□□□□ 0.51
SSSCA1-204ENST00000527413 BRCA1P38398 1863 aaKnown RBP18.23■□□□□ 0.51
SSSCA1-204ENST00000527413 C10orf71Q711Q0 1435 aa18.23■□□□□ 0.51
SSSCA1-204ENST00000527413 INTS5Q6P9B9 1019 aaKnown RBP18.22■□□□□ 0.51
SSSCA1-204ENST00000527413 ZNF784Q8NCA9 323 aaPredicted RBP18.22■□□□□ 0.51
SSSCA1-204ENST00000527413 PHACTR3Q96KR7 559 aa18.22■□□□□ 0.51
SSSCA1-204ENST00000527413 CCDC87Q9NVE4 849 aa18.22■□□□□ 0.51
SSSCA1-204ENST00000527413 USP42Q9H9J4 1324 aaKnown RBP18.22■□□□□ 0.51
SSSCA1-204ENST00000527413 PXDNLA1KZ92 1463 aa18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 CEMIPQ8WUJ3 1361 aa18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 GRIN3BO60391 1043 aa18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 U2AF1L5P0DN76 240 aaPredicted RBP18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 U2AF1Q01081 240 aaKnown RBP eCLIP18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 TEFQ10587 303 aa18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 IL17REQ8NFR9 667 aa18.21■□□□□ 0.51
SSSCA1-204ENST00000527413 CYP19A1P11511 503 aaPredicted RBP18.2■□□□□ 0.5
SSSCA1-204ENST00000527413 TTC5Q8N0Z6 440 aa18.2■□□□□ 0.5
SSSCA1-204ENST00000527413 VSIG10Q8N0Z9 540 aa18.2■□□□□ 0.5
SSSCA1-204ENST00000527413 SRP68Q9UHB9 627 aaKnown RBP18.2■□□□□ 0.5
SSSCA1-204ENST00000527413 SOS1Q07889 1333 aaPredicted RBP18.2■□□□□ 0.5
SSSCA1-204ENST00000527413 AFDNP55196 1824 aaKnown RBP18.19■□□□□ 0.5
SSSCA1-204ENST00000527413 SCN7AQ01118 1682 aa18.18■□□□□ 0.5
SSSCA1-204ENST00000527413 COL15A1P39059 1388 aa18.18■□□□□ 0.5
SSSCA1-204ENST00000527413 ZBTB1Q9Y2K1 713 aa18.18■□□□□ 0.5
SSSCA1-204ENST00000527413 HEG1Q9ULI3 1381 aa18.17■□□□□ 0.5
SSSCA1-204ENST00000527413 FCHSD2O94868 740 aa18.17■□□□□ 0.5
SSSCA1-204ENST00000527413 ZNF790Q6PG37 636 aa18.17■□□□□ 0.5
SSSCA1-204ENST00000527413 PARP3Q9Y6F1 533 aa18.17■□□□□ 0.5
SSSCA1-204ENST00000527413 NRXN2Q9P2S2 1712 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms