RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CTTNBP2Q8WZ74 1663 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 PLEKHG3A1L390 1219 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 AXIN1O15169 862 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 AVPP01185 164 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 ATP2B3Q16720 1220 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 RETREG3Q86VR2 466 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 SPIRE2Q8WWL2 714 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 GBP4Q96PP9 640 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 MYCBPQ99417 103 aaPredicted RBP7.16□□□□□ -1.26
CD44-225ENST00000527326 TRIM34Q9BYJ4 488 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 DACH1Q9UI36 760 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 PCDHGC3Q9UN70 934 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 USP19O94966 1318 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 INSRP06213 1382 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 NLRP1Q9C000 1473 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 ZMYM4Q5VZL5 1548 aa7.16□□□□□ -1.26
CD44-225ENST00000527326 SMPD1P17405 629 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 NDUFV2P19404 249 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 LMOD3Q0VAK6 560 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 AMHR2Q16671 573 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 HSP90AB3PQ58FF7 597 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 RC3H1Q5TC82 1133 aaKnown RBP7.15□□□□□ -1.26
CD44-225ENST00000527326 CYB5RLQ6IPT4 315 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 CRIPAKQ8N1N5 446 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 NGEFQ8N5V2 710 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 PDLIM2Q96JY6 352 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 CRBNQ96SW2 442 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 BRMS1Q9HCU9 246 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 MAPK8IP3Q9UPT6 1336 aa7.15□□□□□ -1.26
CD44-225ENST00000527326 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.15□□□□□ -1.26
CD44-225ENST00000527326 PLEKHH2Q8IVE3 1493 aa7.15□□□□□ -1.27
CD44-225ENST00000527326 J3QL48 77 aa7.14□□□□□ -1.27
CD44-225ENST00000527326 XPCQ01831 940 aaPredicted RBP7.14□□□□□ -1.27
CD44-225ENST00000527326 KANK4Q5T7N3 995 aaPredicted RBP7.14□□□□□ -1.27
CD44-225ENST00000527326 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
CD44-225ENST00000527326 GAS2L3Q86XJ1 694 aa7.14□□□□□ -1.27
CD44-225ENST00000527326 NUDT12Q9BQG2 462 aa7.14□□□□□ -1.27
CD44-225ENST00000527326 ZNF608Q9ULD9 1512 aaPredicted RBP7.14□□□□□ -1.27
CD44-225ENST00000527326 TARBP1Q13395 1621 aaKnown RBP7.13□□□□□ -1.27
CD44-225ENST00000527326 UACAQ9BZF9 1416 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 EIF3AQ14152 1382 aaKnown RBP7.13□□□□□ -1.27
CD44-225ENST00000527326 MOXD2PA6NHM9 499 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 TNNT3P45378 269 aaPredicted RBP7.13□□□□□ -1.27
CD44-225ENST00000527326 WNT7BP56706 349 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 KIAA2012Q0VF49 1180 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 CTC1Q2NKJ3 1217 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 CERS3Q8IU89 383 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 EGFL6Q8IUX8 553 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 BANK1Q8NDB2 785 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 PNISRQ8TF01 805 aaKnown RBP7.13□□□□□ -1.27
CD44-225ENST00000527326 NCAPGQ9BPX3 1015 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 BEGAINQ9BUH8 593 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 TBC1D2Q9BYX2 928 aa7.13□□□□□ -1.27
CD44-225ENST00000527326 ARHGAP31Q2M1Z3 1444 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 BRD4O60885 1362 aaPredicted RBP7.12□□□□□ -1.27
CD44-225ENST00000527326 ZNF445P59923 1031 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 SKOR1P84550 965 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 SETQ01105 290 aaPredicted RBP7.12□□□□□ -1.27
CD44-225ENST00000527326 SATB1Q01826 763 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 SYCP1Q15431 976 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 PTCRAQ6ISU1 281 aaPredicted RBP7.12□□□□□ -1.27
CD44-225ENST00000527326 PARP9Q8IXQ6 854 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 ANKRD7Q92527 254 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 TBC1D32Q96NH3 1257 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 PANK3Q9H999 370 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 CEP83Q9Y592 693 aa7.12□□□□□ -1.27
CD44-225ENST00000527326 RAPGEF2Q9Y4G8 1499 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 CFAP65Q6ZU64 1925 aaKnown RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 NCOA3Q9Y6Q9 1424 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 RAD50Q92878 1312 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 GOLGA6L22H0YM25 854 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 SLFN14P0C7P3 912 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 CAPN2P17655 700 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 SMCPP49901 116 aaPredicted RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 GTF2A1P52655 376 aaPredicted RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 C1orf115Q9H7X2 142 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 SMC4Q9NTJ3 1288 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 RBM28Q9NW13 759 aaKnown RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 RAI14Q9P0K7 980 aa7.11□□□□□ -1.27
CD44-225ENST00000527326 GMPR2Q9P2T1 348 aaKnown RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 FEZ2Q9UHY8 353 aaPredicted RBP7.11□□□□□ -1.27
CD44-225ENST00000527326 DHX29Q7Z478 1369 aaKnown RBP7.1□□□□□ -1.27
CD44-225ENST00000527326 KIF1CO43896 1103 aaKnown RBP7.1□□□□□ -1.27
CD44-225ENST00000527326 CCDC172P0C7W6 258 aa7.1□□□□□ -1.27
CD44-225ENST00000527326 SLC26A8Q96RN1 970 aa7.1□□□□□ -1.27
CD44-225ENST00000527326 DIAPH3Q9NSV4 1193 aa7.1□□□□□ -1.27
CD44-225ENST00000527326 TIAM1Q13009 1591 aa7.1□□□□□ -1.27
CD44-225ENST00000527326 MAGI1Q96QZ7 1491 aaPredicted RBP7.1□□□□□ -1.27
CD44-225ENST00000527326 ALDH1A1P00352 501 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 CCNYL3P0C7X3 344 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 CALRP27797 417 aaKnown RBP7.09□□□□□ -1.27
CD44-225ENST00000527326 MTMR2Q13614 643 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 TERF2Q15554 542 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 KLHL40Q2TBA0 621 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 TMED8Q6PL24 325 aaPredicted RBP7.09□□□□□ -1.27
CD44-225ENST00000527326 MNS1Q8NEH6 495 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 PRR7Q8TB68 274 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 HPS1Q92902 700 aa7.09□□□□□ -1.27
CD44-225ENST00000527326 KIF16BQ96L93 1317 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms