RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 CHRM1P11229 460 aaPredicted RBP14.56□□□□□ -0.08
VPS11-202ENST00000526829 KCNQ4P56696 695 aa14.56□□□□□ -0.08
VPS11-202ENST00000526829 TEX2Q8IWB9 1127 aa14.56□□□□□ -0.08
VPS11-202ENST00000526829 RAPGEF4Q8WZA2 1011 aa14.56□□□□□ -0.08
VPS11-202ENST00000526829 CARD14Q9BXL6 1004 aa14.56□□□□□ -0.08
VPS11-202ENST00000526829 TATP17735 454 aaPredicted RBP14.55□□□□□ -0.08
VPS11-202ENST00000526829 TFCP2L1Q9NZI6 479 aa14.55□□□□□ -0.08
VPS11-202ENST00000526829 HMGB1P09429 215 aaKnown RBP14.54□□□□□ -0.08
VPS11-202ENST00000526829 CCNL1Q9UK58 526 aaPredicted RBP14.54□□□□□ -0.08
VPS11-202ENST00000526829 NCAPD2Q15021 1401 aa14.54□□□□□ -0.08
VPS11-202ENST00000526829 PKD1L3Q7Z443 1732 aa14.54□□□□□ -0.08
VPS11-202ENST00000526829 NSD3Q9BZ95 1437 aa14.54□□□□□ -0.08
VPS11-202ENST00000526829 NOP58Q9Y2X3 529 aaKnown RBP14.54□□□□□ -0.08
VPS11-202ENST00000526829 PCDH11XQ9BZA7 1347 aa14.54□□□□□ -0.08
VPS11-202ENST00000526829 PCDH11YQ9BZA8 1340 aa14.54□□□□□ -0.08
VPS11-202ENST00000526829 POLD1P28340 1107 aa14.53□□□□□ -0.08
VPS11-202ENST00000526829 HNRNPUQ00839 825 aaKnown RBP eCLIP14.53□□□□□ -0.08
VPS11-202ENST00000526829 C5P01031 1676 aa14.53□□□□□ -0.08
VPS11-202ENST00000526829 TOGARAM1Q9Y4F4 1720 aa14.53□□□□□ -0.08
VPS11-202ENST00000526829 HMGB2P26583 209 aaKnown RBP14.53□□□□□ -0.08
VPS11-202ENST00000526829 ZNF784Q8NCA9 323 aaPredicted RBP14.52□□□□□ -0.09
VPS11-202ENST00000526829 TAF1LQ8IZX4 1826 aa14.52□□□□□ -0.09
VPS11-202ENST00000526829 ITGB4P16144 1822 aa14.51□□□□□ -0.09
VPS11-202ENST00000526829 ZFP91Q96JP5 570 aaPredicted RBP14.51□□□□□ -0.09
VPS11-202ENST00000526829 EMILIN1Q9Y6C2 1016 aa14.51□□□□□ -0.09
VPS11-202ENST00000526829 CYP27B1O15528 508 aa14.51□□□□□ -0.09
VPS11-202ENST00000526829 COL23A1Q86Y22 540 aaPredicted RBP14.5□□□□□ -0.09
VPS11-202ENST00000526829 UTRNP46939 3433 aa14.5□□□□□ -0.09
VPS11-202ENST00000526829 MAP2P11137 1827 aaKnown RBP14.5□□□□□ -0.09
VPS11-202ENST00000526829 IRX6P78412 446 aaPredicted RBP14.49□□□□□ -0.09
VPS11-202ENST00000526829 WASHC2AQ641Q2 1341 aa14.49□□□□□ -0.09
VPS11-202ENST00000526829 PALLDQ8WX93 1383 aa14.49□□□□□ -0.09
VPS11-202ENST00000526829 POLR3GLQ9BT43 218 aa14.49□□□□□ -0.09
VPS11-202ENST00000526829 NKX1-1Q15270 411 aaPredicted RBP14.48□□□□□ -0.09
VPS11-202ENST00000526829 PPM1GO15355 546 aaPredicted RBP14.47□□□□□ -0.09
VPS11-202ENST00000526829 GPR162Q16538 588 aa14.47□□□□□ -0.09
VPS11-202ENST00000526829 C4BP0C0L5 1744 aa14.47□□□□□ -0.09
VPS11-202ENST00000526829 MPRIPQ6WCQ1 1025 aa14.47□□□□□ -0.09
VPS11-202ENST00000526829 NLGN2Q8NFZ4 835 aa14.47□□□□□ -0.09
VPS11-202ENST00000526829 BBXQ8WY36 941 aaPredicted RBP14.46□□□□□ -0.09
VPS11-202ENST00000526829 SMARCC1Q92922 1105 aaPredicted RBP14.46□□□□□ -0.09
VPS11-202ENST00000526829 CHMP4BQ9H444 224 aaKnown RBP14.46□□□□□ -0.09
VPS11-202ENST00000526829 FLAD1Q8NFF5 587 aa14.45□□□□□ -0.1
VPS11-202ENST00000526829 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.45□□□□□ -0.1
VPS11-202ENST00000526829 EYA1Q99502 592 aa14.45□□□□□ -0.1
VPS11-202ENST00000526829 POLKQ9UBT6 870 aa14.45□□□□□ -0.1
VPS11-202ENST00000526829 SPG7Q9UQ90 795 aa14.45□□□□□ -0.1
VPS11-202ENST00000526829 UBR3Q6ZT12 1888 aa14.45□□□□□ -0.1
VPS11-202ENST00000526829 PLEKHG2Q9H7P9 1386 aa14.44□□□□□ -0.1
VPS11-202ENST00000526829 PIGBQ92521 554 aa14.44□□□□□ -0.1
VPS11-202ENST00000526829 FTSJ3Q8IY81 847 aaKnown RBP14.43□□□□□ -0.1
VPS11-202ENST00000526829 NCLP19338 710 aaKnown RBP14.42□□□□□ -0.1
VPS11-202ENST00000526829 MSL1Q68DK7 614 aa14.42□□□□□ -0.1
VPS11-202ENST00000526829 RRP9O43818 475 aaKnown RBP14.42□□□□□ -0.1
VPS11-202ENST00000526829 IGSF3O75054 1194 aa14.42□□□□□ -0.1
VPS11-202ENST00000526829 EIF4G2P78344 907 aaKnown RBP eCLIP14.42□□□□□ -0.1
VPS11-202ENST00000526829 GTF2E1P29083 439 aaPredicted RBP14.41□□□□□ -0.1
VPS11-202ENST00000526829 AMIGO3Q86WK7 504 aa14.41□□□□□ -0.1
VPS11-202ENST00000526829 CD2APQ9Y5K6 639 aa14.41□□□□□ -0.1
VPS11-202ENST00000526829 GRIN3BO60391 1043 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 PHKG2P15735 406 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 YBX3P16989 372 aaKnown RBP eCLIP14.4□□□□□ -0.1
VPS11-202ENST00000526829 EIF4A2Q14240 407 aaKnown RBP14.4□□□□□ -0.1
VPS11-202ENST00000526829 NBR1Q14596 966 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 TICAM2Q86XR7 235 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 IFNL2Q8IZJ0 200 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 AK7Q96M32 723 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 LOC102724428A0A0B4J2F2 783 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 SIK1P57059 783 aa14.4□□□□□ -0.1
VPS11-202ENST00000526829 RTL5Q5HYW3 569 aaPredicted RBP14.4□□□□□ -0.1
VPS11-202ENST00000526829 SECISBP2LQ93073 1101 aaKnown RBP14.4□□□□□ -0.1
VPS11-202ENST00000526829 B4GALNT3Q6L9W6 998 aa14.39□□□□□ -0.11
VPS11-202ENST00000526829 IPO9Q96P70 1041 aaKnown RBP14.39□□□□□ -0.11
VPS11-202ENST00000526829 TMOD3Q9NYL9 352 aa14.39□□□□□ -0.11
VPS11-202ENST00000526829 IGSF1Q8N6C5 1336 aa14.39□□□□□ -0.11
VPS11-202ENST00000526829 SSFA2P28290 1259 aa14.38□□□□□ -0.11
VPS11-202ENST00000526829 LINC00116Q8NCU8 138 aa14.38□□□□□ -0.11
VPS11-202ENST00000526829 ZNF831Q5JPB2 1677 aa14.38□□□□□ -0.11
VPS11-202ENST00000526829 TNNT2P45379 298 aaPredicted RBP14.38□□□□□ -0.11
VPS11-202ENST00000526829 C1QTNF8P60827 252 aa14.38□□□□□ -0.11
VPS11-202ENST00000526829 ASAP1Q9ULH1 1129 aa14.38□□□□□ -0.11
VPS11-202ENST00000526829 ZBED9Q6R2W3 1325 aa14.37□□□□□ -0.11
VPS11-202ENST00000526829 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.37□□□□□ -0.11
VPS11-202ENST00000526829 HSPA5P11021 654 aaKnown RBP14.37□□□□□ -0.11
VPS11-202ENST00000526829 ITPK1Q13572 414 aa14.37□□□□□ -0.11
VPS11-202ENST00000526829 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
VPS11-202ENST00000526829 PANK3Q9H999 370 aa14.36□□□□□ -0.11
VPS11-202ENST00000526829 ATG3Q9NT62 314 aa14.36□□□□□ -0.11
VPS11-202ENST00000526829 RNF216Q9NWF9 866 aaPredicted RBP14.36□□□□□ -0.11
VPS11-202ENST00000526829 KDRP35968 1356 aa14.36□□□□□ -0.11
VPS11-202ENST00000526829 CANXP27824 592 aaKnown RBP14.36□□□□□ -0.11
VPS11-202ENST00000526829 SMIM5Q71RC9 77 aa14.36□□□□□ -0.11
VPS11-202ENST00000526829 PHF14O94880 888 aa14.35□□□□□ -0.11
VPS11-202ENST00000526829 GOLGB1Q14789 3259 aaKnown RBP14.35□□□□□ -0.11
VPS11-202ENST00000526829 ATP6V1AP38606 617 aa14.34□□□□□ -0.11
VPS11-202ENST00000526829 ERVV-2B6SEH9 535 aa14.34□□□□□ -0.11
VPS11-202ENST00000526829 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.34□□□□□ -0.11
VPS11-202ENST00000526829 COL5A3P25940 1745 aaPredicted RBP14.33□□□□□ -0.11
VPS11-202ENST00000526829 ZBTB47Q9UFB7 747 aaPredicted RBP14.33□□□□□ -0.12
VPS11-202ENST00000526829 GNPATO15228 680 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms