RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SNIP1Q8TAD8 396 aaKnown RBP7.88□□□□□ -1.15
CD44-220ENST00000525688 C21orf2O43822 256 aa7.87□□□□□ -1.15
CD44-220ENST00000525688 ICMTO60725 284 aa7.87□□□□□ -1.15
CD44-220ENST00000525688 STAU1O95793 577 aaKnown RBP7.87□□□□□ -1.15
CD44-220ENST00000525688 ALDH1A1P00352 501 aa7.87□□□□□ -1.15
CD44-220ENST00000525688 XAGE2Q96GT9 111 aa7.87□□□□□ -1.15
CD44-220ENST00000525688 KLF16Q9BXK1 252 aaPredicted RBP7.87□□□□□ -1.15
CD44-220ENST00000525688 HRH3Q9Y5N1 445 aa7.87□□□□□ -1.15
CD44-220ENST00000525688 ATAD2Q6PL18 1390 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 ADH1AP07327 375 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 ERCC3P19447 782 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 SMTNP53814 917 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 NNTQ13423 1086 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 FOXD4L5Q5VV16 416 aaPredicted RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 STAG2Q8N3U4 1231 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 KDF1Q8NAX2 398 aaPredicted RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 SCG3Q8WXD2 468 aaKnown RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 FOXD4L4Q8WXT5 416 aaPredicted RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 PURBQ96QR8 312 aaKnown RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 SCHIP1Q9P0W5 487 aaPredicted RBP7.86□□□□□ -1.15
CD44-220ENST00000525688 SERTAD1Q9UHV2 236 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 WASF2Q9Y6W5 498 aa7.86□□□□□ -1.15
CD44-220ENST00000525688 A6NJY4 79 aa7.85□□□□□ -1.15
CD44-220ENST00000525688 SF3B2Q13435 895 aaKnown RBP7.85□□□□□ -1.15
CD44-220ENST00000525688 DNAJC14Q6Y2X3 702 aaPredicted RBP7.85□□□□□ -1.15
CD44-220ENST00000525688 Q6ZVU0 165 aa7.85□□□□□ -1.15
CD44-220ENST00000525688 GTF3C2Q8WUA4 911 aaPredicted RBP7.85□□□□□ -1.15
CD44-220ENST00000525688 TSPAN10Q9H1Z9 355 aaPredicted RBP7.85□□□□□ -1.15
CD44-220ENST00000525688 ARHGEF10LQ9HCE6 1279 aa7.85□□□□□ -1.15
CD44-220ENST00000525688 PLA2G2EQ9NZK7 142 aa7.85□□□□□ -1.15
CD44-220ENST00000525688 SEPT3Q9UH03 358 aa7.85□□□□□ -1.15
CD44-220ENST00000525688 GDF9O60383 454 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 ABL1P00519 1130 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 IL2RAP01589 272 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 FKBP4Q02790 459 aaKnown RBP eCLIP7.84□□□□□ -1.15
CD44-220ENST00000525688 ECM1Q16610 540 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 POTEAQ6S8J7 498 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 CAPN12Q6ZSI9 719 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 ESYT1Q9BSJ8 1104 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 MKNK1Q9BUB5 465 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 PRKD2Q9BZL6 878 aa7.84□□□□□ -1.15
CD44-220ENST00000525688 DNMT3AQ9Y6K1 912 aaPredicted RBP7.84□□□□□ -1.15
CD44-220ENST00000525688 TTBK1Q5TCY1 1321 aaPredicted RBP7.83□□□□□ -1.16
CD44-220ENST00000525688 CDK2AP1O14519 115 aa7.83□□□□□ -1.16
CD44-220ENST00000525688 FOXC1Q12948 553 aa7.83□□□□□ -1.16
CD44-220ENST00000525688 CLN3Q13286 438 aa7.83□□□□□ -1.16
CD44-220ENST00000525688 C2orf49Q9BVC5 232 aaPredicted RBP7.83□□□□□ -1.16
CD44-220ENST00000525688 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.83□□□□□ -1.165e-38■■■■■ 698.7
CD44-220ENST00000525688 A0A1W2PRU2 124 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 H3BRB1 525 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 NPR3P17342 541 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 PTGIRP43119 386 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 MARSP56192 900 aaKnown RBP7.82□□□□□ -1.16
CD44-220ENST00000525688 ZNF211Q13398 564 aaPredicted RBP7.82□□□□□ -1.16
CD44-220ENST00000525688 SLC9A9Q8IVB4 645 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 GLYCTKQ8IVS8 523 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 HELQQ8TDG4 1101 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 CNKSR1Q969H4 720 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 ITPKCQ96DU7 683 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 TUT1Q9H6E5 874 aaKnown RBP7.82□□□□□ -1.16
CD44-220ENST00000525688 RAB6BQ9NRW1 208 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 TOR4AQ9NXH8 423 aa7.82□□□□□ -1.16
CD44-220ENST00000525688 IQSEC3Q9UPP2 1182 aaPredicted RBP7.82□□□□□ -1.16
CD44-220ENST00000525688 J3QL48 77 aa7.81□□□□□ -1.16
CD44-220ENST00000525688 PSMA6P60900 246 aaKnown RBP7.81□□□□□ -1.16
CD44-220ENST00000525688 CBLBQ13191 982 aa7.81□□□□□ -1.16
CD44-220ENST00000525688 FHDC1Q9C0D6 1143 aaPredicted RBP7.81□□□□□ -1.16
CD44-220ENST00000525688 BIN2Q9UBW5 565 aaPredicted RBP7.81□□□□□ -1.16
CD44-220ENST00000525688 TTC24A2A3L6 582 aaPredicted RBP7.8□□□□□ -1.16
CD44-220ENST00000525688 PPP1R12BO60237 982 aaPredicted RBP7.8□□□□□ -1.16
CD44-220ENST00000525688 ZIC2O95409 532 aaPredicted RBP7.8□□□□□ -1.16
CD44-220ENST00000525688 TIMP2P16035 220 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 PRR20EP86478 221 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 PRR20CP86479 221 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 PRR20DP86480 221 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 PRR20BP86481 221 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 PRR20AP86496 221 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 NAA30Q147X3 362 aaPredicted RBP7.8□□□□□ -1.16
CD44-220ENST00000525688 NOM1Q5C9Z4 860 aaKnown RBP7.8□□□□□ -1.16
CD44-220ENST00000525688 CYP4X1Q8N118 509 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 NBPF15Q8N660 670 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 VTI1AQ96AJ9 217 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 ANO2Q9NQ90 1003 aa7.8□□□□□ -1.16
CD44-220ENST00000525688 SMPD1P17405 629 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 HIRAP54198 1017 aaPredicted RBP7.79□□□□□ -1.16
CD44-220ENST00000525688 WDR4P57081 412 aaKnown RBP7.79□□□□□ -1.16
CD44-220ENST00000525688 ARHGAP4P98171 946 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 CENPCQ03188 943 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 TLR1Q15399 786 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 C16orf46Q6P387 395 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 ZNF295-AS1Q8N0V1 137 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 ZFAND3Q9H8U3 227 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 USP3Q9Y6I4 520 aa7.79□□□□□ -1.16
CD44-220ENST00000525688 RBM47A0AV96 593 aaKnown RBP7.78□□□□□ -1.16
CD44-220ENST00000525688 FAM13AO94988 1023 aa7.78□□□□□ -1.16
CD44-220ENST00000525688 TEAD4Q15561 434 aa7.78□□□□□ -1.16
CD44-220ENST00000525688 CHMP7Q8WUX9 453 aaPredicted RBP7.78□□□□□ -1.16
CD44-220ENST00000525688 MYO19Q96H55 970 aa7.78□□□□□ -1.16
CD44-220ENST00000525688 MTMR3Q13615 1198 aa7.77□□□□□ -1.17
CD44-220ENST00000525688 TBCELQ5QJ74 424 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms