RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 FMN1Q68DA7 1419 aa11.52□□□□□ -0.56
NEDD8-203ENST00000524927 SKIV2LQ15477 1246 aaKnown RBP11.52□□□□□ -0.57
NEDD8-203ENST00000524927 ASXL1Q8IXJ9 1541 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 GIGYF1O75420 1035 aaPredicted RBP11.51□□□□□ -0.57
NEDD8-203ENST00000524927 THAP11Q96EK4 314 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 AAASQ9NRG9 546 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 POLR3EQ9NVU0 708 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 DACH1Q9UI36 760 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 RALGAPBQ86X10 1494 aa11.51□□□□□ -0.57
NEDD8-203ENST00000524927 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-203ENST00000524927 FOXC1Q12948 553 aa11.5□□□□□ -0.57
NEDD8-203ENST00000524927 MORN1Q5T089 497 aa11.5□□□□□ -0.57
NEDD8-203ENST00000524927 FAM160A2Q8N612 972 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-203ENST00000524927 DDX11L8A8MPP1 907 aa11.49□□□□□ -0.57
NEDD8-203ENST00000524927 SULF1Q8IWU6 871 aa11.49□□□□□ -0.57
NEDD8-203ENST00000524927 PPP1R1BQ9UD71 204 aaPredicted RBP11.49□□□□□ -0.57
NEDD8-203ENST00000524927 FUT2Q10981 343 aa11.48□□□□□ -0.57
NEDD8-203ENST00000524927 DIXDC1Q155Q3 683 aa11.48□□□□□ -0.57
NEDD8-203ENST00000524927 TBC1D2Q9BYX2 928 aa11.47□□□□□ -0.57
NEDD8-203ENST00000524927 CHD2O14647 1828 aaKnown RBP11.46□□□□□ -0.57
NEDD8-203ENST00000524927 UTRNP46939 3433 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 FLIIQ13045 1269 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 MYSM1Q5VVJ2 828 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 PROCA1Q8NCQ7 364 aaPredicted RBP11.46□□□□□ -0.57
NEDD8-203ENST00000524927 ZMYND15Q9H091 742 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 PRDM9Q9NQV7 894 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 SLC27A5Q9Y2P5 690 aa11.46□□□□□ -0.57
NEDD8-203ENST00000524927 LCE2AQ5TA79 106 aaPredicted RBP11.45□□□□□ -0.58
NEDD8-203ENST00000524927 FCF1Q9Y324 198 aaKnown RBP11.45□□□□□ -0.58
NEDD8-203ENST00000524927 DCCP43146 1447 aa11.44□□□□□ -0.58
NEDD8-203ENST00000524927 CAMTA1Q9Y6Y1 1673 aa11.44□□□□□ -0.58
NEDD8-203ENST00000524927 CD46P15529 392 aa11.44□□□□□ -0.58
NEDD8-203ENST00000524927 NUTM1Q86Y26 1132 aa11.44□□□□□ -0.58
NEDD8-203ENST00000524927 RDH13Q8NBN7 331 aa11.44□□□□□ -0.58
NEDD8-203ENST00000524927 CLK2P49760 499 aaKnown RBP11.43□□□□□ -0.58
NEDD8-203ENST00000524927 PRELPP51888 382 aa11.43□□□□□ -0.58
NEDD8-203ENST00000524927 SPON1Q9HCB6 807 aa11.43□□□□□ -0.58
NEDD8-203ENST00000524927 CFDP1Q9UEE9 299 aaPredicted RBP11.43□□□□□ -0.58
NEDD8-203ENST00000524927 BRWD3Q6RI45 1802 aa11.43□□□□□ -0.58
NEDD8-203ENST00000524927 EFCAB6Q5THR3 1501 aa11.43□□□□□ -0.58
NEDD8-203ENST00000524927 DISP2A7MBM2 1401 aa11.43□□□□□ -0.58
NEDD8-203ENST00000524927 SPIRE2Q8WWL2 714 aa11.42□□□□□ -0.58
NEDD8-203ENST00000524927 TOR4AQ9NXH8 423 aa11.42□□□□□ -0.58
NEDD8-203ENST00000524927 GLI3P10071 1580 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 CHD4Q14839 1912 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 PPP1R15AO75807 674 aaPredicted RBP11.41□□□□□ -0.58
NEDD8-203ENST00000524927 GCGRP47871 477 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 RSPH4AQ5TD94 716 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 KRT27Q7Z3Y8 459 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 SEPT12Q8IYM1 358 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 PIK3C2BO00750 1634 aa11.41□□□□□ -0.58
NEDD8-203ENST00000524927 MBD5Q9P267 1494 aa11.4□□□□□ -0.58
NEDD8-203ENST00000524927 ATP6V1AP38606 617 aa11.4□□□□□ -0.58
NEDD8-203ENST00000524927 RNF19BQ6ZMZ0 732 aa11.4□□□□□ -0.58
NEDD8-203ENST00000524927 MST1RQ04912 1400 aa11.4□□□□□ -0.58
NEDD8-203ENST00000524927 KCNQ2O43526 872 aa11.39□□□□□ -0.59
NEDD8-203ENST00000524927 RPIAP49247 311 aa11.39□□□□□ -0.59
NEDD8-203ENST00000524927 BRICD5Q6PL45 260 aa11.39□□□□□ -0.59
NEDD8-203ENST00000524927 RIC3Q7Z5B4 369 aa11.39□□□□□ -0.59
NEDD8-203ENST00000524927 LRRIQ1Q96JM4 1722 aa11.39□□□□□ -0.59
NEDD8-203ENST00000524927 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.39□□□□□ -0.59
NEDD8-203ENST00000524927 UNC5CLQ8IV45 518 aa11.38□□□□□ -0.59
NEDD8-203ENST00000524927 DDX17Q92841 729 aaKnown RBP11.38□□□□□ -0.59
NEDD8-203ENST00000524927 TBX22Q9Y458 520 aa11.38□□□□□ -0.59
NEDD8-203ENST00000524927 CCDC18Q5T9S5 1454 aa11.38□□□□□ -0.59
NEDD8-203ENST00000524927 ARHGAP31Q2M1Z3 1444 aa11.37□□□□□ -0.59
NEDD8-203ENST00000524927 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.37□□□□□ -0.59
NEDD8-203ENST00000524927 CFAP65Q6ZU64 1925 aaKnown RBP11.37□□□□□ -0.59
NEDD8-203ENST00000524927 RGPD1P0DJD0 1748 aa11.36□□□□□ -0.59
NEDD8-203ENST00000524927 FMNL1O95466 1100 aaPredicted RBP11.36□□□□□ -0.59
NEDD8-203ENST00000524927 AVPP01185 164 aa11.36□□□□□ -0.59
NEDD8-203ENST00000524927 LIMD1Q9UGP4 676 aa11.36□□□□□ -0.59
NEDD8-203ENST00000524927 PLEKHG1Q9ULL1 1385 aa11.36□□□□□ -0.59
NEDD8-203ENST00000524927 SOS2Q07890 1332 aaPredicted RBP11.35□□□□□ -0.59
NEDD8-203ENST00000524927 COL22A1Q8NFW1 1626 aaPredicted RBP11.35□□□□□ -0.59
NEDD8-203ENST00000524927 HSPA6P17066 643 aa11.35□□□□□ -0.59
NEDD8-203ENST00000524927 CSPP1Q1MSJ5 1256 aa11.35□□□□□ -0.59
NEDD8-203ENST00000524927 TREML4Q6UXN2 200 aa11.35□□□□□ -0.59
NEDD8-203ENST00000524927 GMPR2Q9P2T1 348 aaKnown RBP11.35□□□□□ -0.59
NEDD8-203ENST00000524927 MYOM2P54296 1465 aa11.35□□□□□ -0.59
NEDD8-203ENST00000524927 PARD3Q8TEW0 1356 aa11.34□□□□□ -0.59
NEDD8-203ENST00000524927 PIK3R4Q99570 1358 aa11.34□□□□□ -0.59
NEDD8-203ENST00000524927 EZH2Q15910 746 aaKnown RBP11.34□□□□□ -0.59
NEDD8-203ENST00000524927 CRIPAKQ8N1N5 446 aa11.34□□□□□ -0.59
NEDD8-203ENST00000524927 LAMC1P11047 1609 aa11.34□□□□□ -0.59
NEDD8-203ENST00000524927 MOXD2PA6NHM9 499 aa11.33□□□□□ -0.6
NEDD8-203ENST00000524927 SPTLC1O15269 473 aa11.33□□□□□ -0.6
NEDD8-203ENST00000524927 KDM4AO75164 1064 aa11.33□□□□□ -0.6
NEDD8-203ENST00000524927 CD2BP2O95400 341 aaKnown RBP11.33□□□□□ -0.6
NEDD8-203ENST00000524927 CAMKK2Q96RR4 588 aa11.33□□□□□ -0.6
NEDD8-203ENST00000524927 CCNB3Q8WWL7 1395 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 SLIT2O94813 1529 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 UBTFP17480 764 aaKnown RBP11.32□□□□□ -0.6
NEDD8-203ENST00000524927 NDUFV2P19404 249 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 IDI1Q13907 227 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 NBPF8Q3BBV2 869 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 NBPF14Q5TI25 921 aa11.32□□□□□ -0.6
NEDD8-203ENST00000524927 RSBN1LQ6PCB5 846 aaPredicted RBP11.32□□□□□ -0.6
NEDD8-203ENST00000524927 SALL2Q9Y467 1007 aaPredicted RBP11.32□□□□□ -0.6
NEDD8-203ENST00000524927 MARF1Q9Y4F3 1742 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms