RNA–Protein interactions for RNA: ENST00000524162.5

TRAPPC9-215, Transcript of trafficking protein particle complex 9, human

TSL 4

Gene TRAPPC9, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC9-215	ENST00000524162	CIC	Q96RK0	1608 aa	Predicted RBP	27.92	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	MTFR1L	Q9H019	292 aa		27.92	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	U2AF1L5	P0DN76	240 aa	Predicted RBP	27.91	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	KCNQ4	P56696	695 aa		27.91	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	U2AF1	Q01081	240 aa	Known RBP eCLIP	27.91	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	TFCP2L1	Q9NZI6	479 aa		27.91	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	RNMT	O43148	476 aa	Known RBP	27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	PRKAR2B	P31323	418 aa		27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	NFATC2IP	Q8NCF5	419 aa		27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	FLAD1	Q8NFF5	587 aa		27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	PDGFD	Q9GZP0	370 aa	Predicted RBP	27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	SLC52A2	Q9HAB3	445 aa		27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	PNPLA7	Q6ZV29	1317 aa		27.9	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	UBR3	Q6ZT12	1888 aa		27.89	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	MAP3K5	Q99683	1374 aa		27.89	■■■□□ 2.06
TRAPPC9-215	ENST00000524162	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.89	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	GNAT3	A8MTJ3	354 aa		27.88	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	COL5A3	P25940	1745 aa	Predicted RBP	27.87	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	LGR6	Q9HBX8	967 aa		27.87	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	PHACTR3	Q96KR7	559 aa		27.86	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	SIPA1L3	O60292	1781 aa	Predicted RBP	27.86	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	ATP6V1A	P38606	617 aa		27.85	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	PNN	Q9H307	717 aa	Known RBP	27.85	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	PTGER2	P43116	358 aa		27.84	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	CEMIP	Q8WUJ3	1361 aa		27.84	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	ZBTB7A	O95365	584 aa		27.83	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	SGIP1	Q9BQI5	828 aa		27.83	■■■□□ 2.05
TRAPPC9-215	ENST00000524162	UBR2	Q8IWV8	1755 aa		27.82	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	HTATSF1	O43719	755 aa	Known RBP	27.82	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	ITPK1	Q13572	414 aa		27.82	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.82	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	RC3H1	Q5TC82	1133 aa	Known RBP	27.81	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	LINC00116	Q8NCU8	138 aa		27.81	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	AK7	Q96M32	723 aa		27.81	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	SLC4A9	Q96Q91	983 aa		27.81	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.8	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	SSFA2	P28290	1259 aa		27.8	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	IL17RE	Q8NFR9	667 aa		27.8	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	MYH14	Q7Z406	1995 aa	Known RBP	27.79	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	NEFM	P07197	916 aa		27.79	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	CNTNAP4	Q9C0A0	1308 aa		27.78	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	COL23A1	Q86Y22	540 aa	Predicted RBP	27.78	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	RBM42	Q9BTD8	480 aa	Known RBP	27.78	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	TJP1	Q07157	1748 aa		27.78	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	DLG5	Q8TDM6	1919 aa		27.77	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	PLEKHF1	Q96S99	279 aa		27.77	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	PPP1R1B	Q9UD71	204 aa	Predicted RBP	27.77	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	ATF5	Q9Y2D1	282 aa	Predicted RBP	27.77	■■■□□ 2.04
TRAPPC9-215	ENST00000524162	TEF	Q10587	303 aa		27.76	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	VSIG10	Q8N0Z9	540 aa		27.76	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	KCP	Q6ZWJ8	1503 aa		27.76	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	PTCD1	O75127	700 aa	Known RBP	27.74	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	ADRA2B	P18089	450 aa		27.73	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	RTF1	Q92541	710 aa	Known RBP	27.73	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.72	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	POLD1	P28340	1107 aa		27.71	■■■□□ 2.03
TRAPPC9-215	ENST00000524162	GNPAT	O15228	680 aa		27.7	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	RPS6KA4	O75676	772 aa		27.7	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	RTCB	Q9Y3I0	505 aa	Known RBP	27.7	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	ZNF790	Q6PG37	636 aa		27.69	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	AMIGO3	Q86WK7	504 aa		27.69	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	ARX	Q96QS3	562 aa		27.69	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	SLC39A6	Q13433	755 aa		27.68	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	NFE2L2	Q16236	605 aa		27.68	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	TTC5	Q8N0Z6	440 aa		27.68	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	MAPK8IP3	Q9UPT6	1336 aa		27.67	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	MSH5	O43196	834 aa		27.66	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	TRAPPC3L	Q5T215	181 aa		27.66	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	CRKL	P46109	303 aa	Known RBP	27.65	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	TEX13A	Q9BXU3	409 aa	Predicted RBP	27.65	■■■□□ 2.02
TRAPPC9-215	ENST00000524162	C4A	P0C0L4	1744 aa		27.64	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	HEG1	Q9ULI3	1381 aa		27.63	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	BTBD11	A6QL63	1104 aa		27.63	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	CYP19A1	P11511	503 aa	Predicted RBP	27.63	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	PHF14	O94880	888 aa		27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	WDR43	Q15061	677 aa	Known RBP eCLIP	27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	INTS5	Q6P9B9	1019 aa	Known RBP	27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	MCM10	Q7L590	875 aa		27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	DNAJC10	Q8IXB1	793 aa		27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	ZNF496	Q96IT1	587 aa	Predicted RBP	27.62	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	FMNL2	Q96PY5	1086 aa		27.61	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	SYT17	Q9BSW7	474 aa		27.61	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	FHDC1	Q9C0D6	1143 aa	Predicted RBP	27.61	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	CCDC87	Q9NVE4	849 aa		27.61	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	TAF7	Q15545	349 aa	Predicted RBP	27.6	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	STARD3NL	O95772	234 aa		27.59	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	PNISR	Q8TF01	805 aa	Known RBP	27.59	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	ARHGEF1	Q92888	912 aa	Known RBP	27.59	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	NLGN1	Q8N2Q7	840 aa		27.58	■■■□□ 2.01
TRAPPC9-215	ENST00000524162	KDM3B	Q7LBC6	1761 aa		27.58	■■■□□ 2
TRAPPC9-215	ENST00000524162	RFC4	P35249	363 aa		27.57	■■■□□ 2
TRAPPC9-215	ENST00000524162	LMOD3	Q0VAK6	560 aa		27.57	■■■□□ 2
TRAPPC9-215	ENST00000524162	DCTN1	Q14203	1278 aa		27.57	■■■□□ 2
TRAPPC9-215	ENST00000524162	RUNDC1	Q96C34	613 aa		27.57	■■■□□ 2
TRAPPC9-215	ENST00000524162	TMPO	P42166	694 aa	Known RBP	27.56	■■■□□ 2
TRAPPC9-215	ENST00000524162	SOS1	Q07889	1333 aa	Predicted RBP	27.56	■■■□□ 2
TRAPPC9-215	ENST00000524162	SMIM5	Q71RC9	77 aa		27.55	■■■□□ 2
TRAPPC9-215	ENST00000524162	ADAMTS8	Q9UP79	889 aa		27.55	■■■□□ 2
TRAPPC9-215	ENST00000524162	MSL1	Q68DK7	614 aa		27.54	■■■□□ 2
TRAPPC9-215	ENST00000524162	BABAM1	Q9NWV8	329 aa		27.54	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms