RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	TRIM37	O94972	964 aa		10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	CC2D1B	Q5T0F9	858 aa	Known RBP	10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	C3orf67	Q6ZVT6	689 aa		10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	COL14A1	Q05707	1796 aa	Known RBP	10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	NWD2	Q9ULI1	1742 aa		10.15	□□□□□ -0.78
SPIDR-223	ENST00000524033	TTC21B	Q7Z4L5	1316 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	PLIN1	O60240	522 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	APBA3	O96018	575 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	C20orf194	Q5TEA3	1177 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	USP6	P35125	1406 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	SSH2	Q76I76	1423 aa		10.14	□□□□□ -0.79
SPIDR-223	ENST00000524033	PLCH1	Q4KWH8	1693 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	PSD	A5PKW4	1024 aa	Predicted RBP	10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	KCNH5	Q8NCM2	988 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	ADAMTS8	Q9UP79	889 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	AXIN2	Q9Y2T1	843 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	AATK	Q6ZMQ8	1374 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	SBNO2	Q9Y2G9	1366 aa		10.13	□□□□□ -0.79
SPIDR-223	ENST00000524033	SLFN5	Q08AF3	891 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	EZH2	Q15910	746 aa	Known RBP	10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	C8orf34	Q49A92	452 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	TOM1L2	Q6ZVM7	507 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	NPM2	Q86SE8	214 aa	Known RBP	10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	ARHGEF25	Q86VW2	580 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	CAMKK2	Q96RR4	588 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	SALL2	Q9Y467	1007 aa	Predicted RBP	10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	NINL	Q9Y2I6	1382 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	CAMTA1	Q9Y6Y1	1673 aa		10.12	□□□□□ -0.79
SPIDR-223	ENST00000524033	TTC21A	Q8NDW8	1320 aa		10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	ABCA3	Q99758	1704 aa		10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	C2orf72	A6NCS6	295 aa		10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	DSG2	Q14126	1118 aa		10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	CDCA8	Q53HL2	280 aa		10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.11	□□□□□ -0.79	3e-6	■■■□□ 16.7
SPIDR-223	ENST00000524033	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.11	□□□□□ -0.79
SPIDR-223	ENST00000524033	QRICH2	Q9H0J4	1663 aa		10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	R3HDM1	Q15032	1099 aa	Known RBP	10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	SKAP1	Q86WV1	359 aa		10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	PLPP6	Q8IY26	295 aa		10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	NGEF	Q8N5V2	710 aa		10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	SLC12A5	Q9H2X9	1139 aa		10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	LAS1L	Q9Y4W2	734 aa	Known RBP	10.1	□□□□□ -0.79
SPIDR-223	ENST00000524033	CRB1	P82279	1406 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	NEFM	P07197	916 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	POTEI	P0CG38	1075 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	CSB-PGBD3	P0DP91	1061 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	DDB1	Q16531	1140 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	FAM161A	Q3B820	660 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	TERF2IP	Q9NYB0	399 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	ITSN1	Q15811	1721 aa		10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	COL5A2	P05997	1499 aa	Predicted RBP	10.09	□□□□□ -0.79
SPIDR-223	ENST00000524033	WDR17	Q8IZU2	1322 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	CPSF1	Q10570	1443 aa	Known RBP	10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	NRAP	Q86VF7	1730 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	WDR43	Q15061	677 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	SMYD5	Q6GMV2	418 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	PUS7	Q96PZ0	661 aa	Known RBP	10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	CARD10	Q9BWT7	1032 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	KNSTRN	Q9Y448	316 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	TOPAZ1	Q8N9V7	1692 aa		10.08	□□□□□ -0.8
SPIDR-223	ENST00000524033	EXOC5	O00471	708 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	SEMA3E	O15041	775 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	FOXK1	P85037	733 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	NBPF14	Q5TI25	921 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	NME9	Q86XW9	330 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	BRWD3	Q6RI45	1802 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	DISP2	A7MBM2	1401 aa		10.07	□□□□□ -0.8
SPIDR-223	ENST00000524033	NRK	Q7Z2Y5	1582 aa		10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	CAMK2B	Q13554	666 aa		10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	MARCH10	Q8NA82	808 aa	Predicted RBP	10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	CRYBG1	Q9Y4K1	1723 aa		10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	THSD7A	Q9UPZ6	1657 aa		10.06	□□□□□ -0.8
SPIDR-223	ENST00000524033	ANKRD26	Q9UPS8	1709 aa		10.05	□□□□□ -0.8
SPIDR-223	ENST00000524033	DPYSL4	O14531	572 aa		10.05	□□□□□ -0.8
SPIDR-223	ENST00000524033	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.05	□□□□□ -0.8
SPIDR-223	ENST00000524033	USP31	Q70CQ4	1352 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	SLIT3	O75094	1523 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	POTEF	A5A3E0	1075 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033		E9PSI1	815 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	PLSCR1	O15162	318 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	NFKBIB	Q15653	356 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	IL27	Q8NEV9	243 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	NLRP2	Q9NX02	1062 aa		10.04	□□□□□ -0.8
SPIDR-223	ENST00000524033	MAP3K9	P80192	1104 aa		10.03	□□□□□ -0.8
SPIDR-223	ENST00000524033	PDE3A	Q14432	1141 aa		10.03	□□□□□ -0.8
SPIDR-223	ENST00000524033	PTF1A	Q7RTS3	328 aa		10.03	□□□□□ -0.8
SPIDR-223	ENST00000524033	ANKRD24	Q8TF21	1146 aa		10.03	□□□□□ -0.8
SPIDR-223	ENST00000524033	LMO7	Q8WWI1	1683 aa		10.02	□□□□□ -0.8
SPIDR-223	ENST00000524033	OVOS2	A0A0G2JMS6	1433 aa		10.02	□□□□□ -0.81
SPIDR-223	ENST00000524033	OVOS2	A0A0J9YW53	1432 aa		10.02	□□□□□ -0.81
SPIDR-223	ENST00000524033	OVOS2	Q6IE36	1432 aa		10.02	□□□□□ -0.81
SPIDR-223	ENST00000524033	CGNL1	Q0VF96	1302 aa		10.02	□□□□□ -0.81
SPIDR-223	ENST00000524033	EDC4	Q6P2E9	1401 aa	Known RBP	10.01	□□□□□ -0.81
SPIDR-223	ENST00000524033	KIF3C	O14782	793 aa		10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms