RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 KCNQ4P56696 695 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 SIK1P57059 783 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 SLC16A10Q8TF71 515 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 RSPH6AQ9H0K4 717 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 ATG3Q9NT62 314 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 COL24A1Q17RW2 1714 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 TFCP2L1Q9NZI6 479 aa17.09■□□□□ 0.33
CLCN3-210ENST00000515420 PNPLA7Q6ZV29 1317 aa17.09■□□□□ 0.33
CLCN3-210ENST00000515420 UBR3Q6ZT12 1888 aa17.08■□□□□ 0.33
CLCN3-210ENST00000515420 MAP3K5Q99683 1374 aa17.08■□□□□ 0.32
CLCN3-210ENST00000515420 RNMTO43148 476 aaKnown RBP17.08■□□□□ 0.32
CLCN3-210ENST00000515420 U2AF1L5P0DN76 240 aaPredicted RBP17.08■□□□□ 0.32
CLCN3-210ENST00000515420 U2AF1Q01081 240 aaKnown RBP eCLIP17.08■□□□□ 0.32
CLCN3-210ENST00000515420 PDGFDQ9GZP0 370 aaPredicted RBP17.08■□□□□ 0.32
CLCN3-210ENST00000515420 SLC52A2Q9HAB3 445 aa17.08■□□□□ 0.32
CLCN3-210ENST00000515420 COL5A3P25940 1745 aaPredicted RBP17.07■□□□□ 0.32
CLCN3-210ENST00000515420 PRKAR2BP31323 418 aa17.07■□□□□ 0.32
CLCN3-210ENST00000515420 NFATC2IPQ8NCF5 419 aa17.07■□□□□ 0.32
CLCN3-210ENST00000515420 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
CLCN3-210ENST00000515420 MYBBP1AQ9BQG0 1328 aaKnown RBP17.06■□□□□ 0.32
CLCN3-210ENST00000515420 GNAT3A8MTJ3 354 aa17.06■□□□□ 0.32
CLCN3-210ENST00000515420 ZBTB7AO95365 584 aa17.05■□□□□ 0.32
CLCN3-210ENST00000515420 ATP6V1AP38606 617 aa17.05■□□□□ 0.32
CLCN3-210ENST00000515420 LGR6Q9HBX8 967 aa17.05■□□□□ 0.32
CLCN3-210ENST00000515420 SIPA1L3O60292 1781 aaPredicted RBP17.05■□□□□ 0.32
CLCN3-210ENST00000515420 PTGER2P43116 358 aa17.04■□□□□ 0.32
CLCN3-210ENST00000515420 AK7Q96M32 723 aa17.04■□□□□ 0.32
CLCN3-210ENST00000515420 SGIP1Q9BQI5 828 aa17.04■□□□□ 0.32
CLCN3-210ENST00000515420 CEMIPQ8WUJ3 1361 aa17.03■□□□□ 0.32
CLCN3-210ENST00000515420 UBR2Q8IWV8 1755 aa17.03■□□□□ 0.32
CLCN3-210ENST00000515420 ITPK1Q13572 414 aa17.03■□□□□ 0.32
CLCN3-210ENST00000515420 LINC00116Q8NCU8 138 aa17.03■□□□□ 0.32
CLCN3-210ENST00000515420 PHACTR3Q96KR7 559 aa17.03■□□□□ 0.32
CLCN3-210ENST00000515420 PPP1R1BQ9UD71 204 aaPredicted RBP17.03■□□□□ 0.32
CLCN3-210ENST00000515420 SSFA2P28290 1259 aa17.02■□□□□ 0.32
CLCN3-210ENST00000515420 RBM42Q9BTD8 480 aaKnown RBP17.02■□□□□ 0.32
CLCN3-210ENST00000515420 PNNQ9H307 717 aaKnown RBP17.02■□□□□ 0.32
CLCN3-210ENST00000515420 ATF5Q9Y2D1 282 aaPredicted RBP17.02■□□□□ 0.32
CLCN3-210ENST00000515420 TJP1Q07157 1748 aa17.01■□□□□ 0.31
CLCN3-210ENST00000515420 NEFMP07197 916 aa17.01■□□□□ 0.31
CLCN3-210ENST00000515420 RC3H1Q5TC82 1133 aaKnown RBP17.01■□□□□ 0.31
CLCN3-210ENST00000515420 COL23A1Q86Y22 540 aaPredicted RBP17.01■□□□□ 0.31
CLCN3-210ENST00000515420 SLC4A9Q96Q91 983 aa17.01■□□□□ 0.31
CLCN3-210ENST00000515420 CNTNAP4Q9C0A0 1308 aa17■□□□□ 0.31
CLCN3-210ENST00000515420 HTATSF1O43719 755 aaKnown RBP17■□□□□ 0.31
CLCN3-210ENST00000515420 PRKRIP1Q9H875 184 aaPredicted RBP17■□□□□ 0.31
CLCN3-210ENST00000515420 KCPQ6ZWJ8 1503 aa17■□□□□ 0.31
CLCN3-210ENST00000515420 MYH14Q7Z406 1995 aaKnown RBP16.99■□□□□ 0.31
CLCN3-210ENST00000515420 TEFQ10587 303 aa16.99■□□□□ 0.31
CLCN3-210ENST00000515420 IL17REQ8NFR9 667 aa16.99■□□□□ 0.31
CLCN3-210ENST00000515420 DLG5Q8TDM6 1919 aa16.99■□□□□ 0.31
CLCN3-210ENST00000515420 ZNF316A6NFI3 1004 aaPredicted RBP16.98■□□□□ 0.31
CLCN3-210ENST00000515420 PTCD1O75127 700 aaKnown RBP16.98■□□□□ 0.31
CLCN3-210ENST00000515420 POLD1P28340 1107 aa16.98■□□□□ 0.31
CLCN3-210ENST00000515420 PLEKHF1Q96S99 279 aa16.98■□□□□ 0.31
CLCN3-210ENST00000515420 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.97■□□□□ 0.31
CLCN3-210ENST00000515420 GNPATO15228 680 aa16.97■□□□□ 0.31
CLCN3-210ENST00000515420 VSIG10Q8N0Z9 540 aa16.97■□□□□ 0.31
CLCN3-210ENST00000515420 RTF1Q92541 710 aaKnown RBP16.97■□□□□ 0.31
CLCN3-210ENST00000515420 ARXQ96QS3 562 aa16.96■□□□□ 0.31
CLCN3-210ENST00000515420 RTCBQ9Y3I0 505 aaKnown RBP16.96■□□□□ 0.31
CLCN3-210ENST00000515420 RPS6KA4O75676 772 aa16.95■□□□□ 0.3
CLCN3-210ENST00000515420 SLC39A6Q13433 755 aa16.95■□□□□ 0.3
CLCN3-210ENST00000515420 AMIGO3Q86WK7 504 aa16.95■□□□□ 0.3
CLCN3-210ENST00000515420 TTC5Q8N0Z6 440 aa16.95■□□□□ 0.3
CLCN3-210ENST00000515420 C4AP0C0L4 1744 aa16.94■□□□□ 0.3
CLCN3-210ENST00000515420 PHF14O94880 888 aa16.94■□□□□ 0.3
CLCN3-210ENST00000515420 CRKLP46109 303 aaKnown RBP16.94■□□□□ 0.3
CLCN3-210ENST00000515420 ZNF790Q6PG37 636 aa16.94■□□□□ 0.3
CLCN3-210ENST00000515420 MAPK8IP3Q9UPT6 1336 aa16.94■□□□□ 0.3
CLCN3-210ENST00000515420 NFE2L2Q16236 605 aa16.92■□□□□ 0.3
CLCN3-210ENST00000515420 TRAPPC3LQ5T215 181 aa16.92■□□□□ 0.3
CLCN3-210ENST00000515420 FHDC1Q9C0D6 1143 aaPredicted RBP16.92■□□□□ 0.3
CLCN3-210ENST00000515420 HEG1Q9ULI3 1381 aa16.91■□□□□ 0.3
CLCN3-210ENST00000515420 DNAJC10Q8IXB1 793 aa16.91■□□□□ 0.3
CLCN3-210ENST00000515420 SYT17Q9BSW7 474 aa16.91■□□□□ 0.3
CLCN3-210ENST00000515420 CCDC87Q9NVE4 849 aa16.91■□□□□ 0.3
CLCN3-210ENST00000515420 BTBD11A6QL63 1104 aa16.9■□□□□ 0.3
CLCN3-210ENST00000515420 CYP19A1P11511 503 aaPredicted RBP16.9■□□□□ 0.3
CLCN3-210ENST00000515420 WDR43Q15061 677 aaKnown RBP eCLIP16.9■□□□□ 0.3
CLCN3-210ENST00000515420 MCM10Q7L590 875 aa16.9■□□□□ 0.3
CLCN3-210ENST00000515420 ZNF496Q96IT1 587 aaPredicted RBP16.9■□□□□ 0.3
CLCN3-210ENST00000515420 FMNL2Q96PY5 1086 aa16.9■□□□□ 0.3
CLCN3-210ENST00000515420 TEX13AQ9BXU3 409 aaPredicted RBP16.9■□□□□ 0.3
CLCN3-210ENST00000515420 INTS5Q6P9B9 1019 aaKnown RBP16.89■□□□□ 0.29
CLCN3-210ENST00000515420 ARHGEF1Q92888 912 aaKnown RBP16.89■□□□□ 0.29
CLCN3-210ENST00000515420 KDM3BQ7LBC6 1761 aa16.88■□□□□ 0.29
CLCN3-210ENST00000515420 STARD3NLO95772 234 aa16.88■□□□□ 0.29
CLCN3-210ENST00000515420 RFC4P35249 363 aa16.88■□□□□ 0.29
CLCN3-210ENST00000515420 TAF7Q15545 349 aaPredicted RBP16.88■□□□□ 0.29
CLCN3-210ENST00000515420 MSL1Q68DK7 614 aa16.88■□□□□ 0.29
CLCN3-210ENST00000515420 LMOD3Q0VAK6 560 aa16.87■□□□□ 0.29
CLCN3-210ENST00000515420 DCTN1Q14203 1278 aa16.87■□□□□ 0.29
CLCN3-210ENST00000515420 SMIM5Q71RC9 77 aa16.87■□□□□ 0.29
CLCN3-210ENST00000515420 NLGN1Q8N2Q7 840 aa16.87■□□□□ 0.29
CLCN3-210ENST00000515420 PNISRQ8TF01 805 aaKnown RBP16.87■□□□□ 0.29
CLCN3-210ENST00000515420 SOS1Q07889 1333 aaPredicted RBP16.87■□□□□ 0.29
CLCN3-210ENST00000515420 DCAF8L1A6NGE4 600 aa16.86■□□□□ 0.29
CLCN3-210ENST00000515420 RUNDC1Q96C34 613 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms